RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HUNK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053414

Ensembl transcript IDs: ENSMUST00000065856.8, ENSMUST00000231719.2

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACACAGAGCGGAGGGGAGGGACAACCTGGTACCAGTCTGGAAATCTaGTTGGCCCAGCAGATGGAGGTGTGGTTTTTAGCTCTGAGCCCA +
Preference number: 1 (lower is better)
Translates to: TQSGGEGQPGTSLEI*LAQQMEVWFLALSP
Trigger: TGGGCTCAGAGCTAAAAACCACACCTCCATCTGCTGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR TCA 90 bp CAGGGTCAGCCAAATCCGTGTTCTCTTCTAGTTCAGTCAGAGCTCTaGGAGGCCAAAGGAAGCCGCCCGCCACCAGTAAATGAGAGGCAG +
Preference number: 1 (lower is better)
Translates to: QGQPNPCSLLVQSEL*EAKGSRPPPVNERQ
Trigger: CTGCCTCTCATTTACTGGTGGCGGGCGGCTTCCTTTGGCCTCTCAGAGCTCTGACTGAACTAGAAGAGAACACGGATTTGGCTGACCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 90 bp TTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGACAACCTaGTACCAGTCTGGAAATCTGATTGGCCCAGCAGATGGAGGTGTG +
Preference number: 1 (lower is better)
Translates to: LQNCERHTERRGGTT*YQSGNLIGPADGGV
Trigger: CACACCTCCATCTGCTGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR GCA 90 bp CAGCTTGTCTCCCTCCTGTTCTCATTTGCCTCTCAATGGGTCCACTaGCTACTGAGGACTCAGGTGGGTAACCTGAGTTCAGAGTCCAAG +
Preference number: 1 (lower is better)
Translates to: QLVSLLFSFASQWVH*LLRTQVGNLSSESK
Trigger: CTTGGACTCTGAACTCAGGTTACCCACCTGAGTCCTCAGTAGGCAGTGGACCCATTGAGAGGCAAATGAGAACAGGAGGGAGACAAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 90 bp CCCAGAACACAGCTTGTCTCCCTCCTGTTCTCATTTGCCTCTCAATaGGTCCACTGCCTACTGAGGACTCAGGTGGGTAACCTGAGTTCA +
Preference number: 1 (lower is better)
Translates to: PRTQLVSLLFSFASQ*VHCLLRTQVGNLSS
Trigger: TGAACTCAGGTTACCCACCTGAGTCCTCAGTAGGCAGTGGACCCATTGAGAGGCAAATGAGAACAGGAGGGAGACAAGCTGTGTTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR TCA 90 bp ATTTTCAGTGTCAAGTCCTGGGAGCTGAACGGAAGCCATGCTGAATaGAGAACACCATCAGCTCTGGGAGAAAAGCCTGGCCTCCTCCTG +
Preference number: 1 (lower is better)
Translates to: IFSVKSWELNGSHAE*RTPSALGEKPGLLL
Trigger: CAGGAGGAGGCCAGGCTTTTCTCCCAGAGCTGATGGTGTTCTTCATTCAGCATGGCTTCCGTTCAGCTCCCAGGACTTGACACTGAAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 90 bp TCTTCTTTCACGCGGTTTCCTAGACTCGTCTGTCAGGTGTTTATGTaGGCCCCAGAACACAGCTTGTCTCCCTCCTGTTCTCATTTGCCT +
Preference number: 1 (lower is better)
Translates to: SSFTRFPRLVCQVFM*APEHSLSPSCSHLP
Trigger: AGGCAAATGAGAACAGGAGGGAGACAAGCTGTGTTCTGGGGCGCACATAAACACCTGACAGACGAGTCTAGGAAACCGCGTGAAAGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR TCA 90 bp TTCTATTTTCAGTGTCAAGTCCTGGGAGCTGAACGGAAGCCATGCTaGATGAAGAACACCATCAGCTCTGGGAGAAAAGCCTGGCCTCCT +
Preference number: 1 (lower is better)
Translates to: FYFQCQVLGAERKPC*MKNTISSGRKAWPP
Trigger: AGGAGGCCAGGCTTTTCTCCCAGAGCTGATGGTGTTCTTCATTCAGCATGGCTTCCGTTCAGCTCCCAGGACTTGACACTGAAAATAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 90 bp CTTTCTCTCTCTCCAGAGCCATCTGGAGCTAAGTTCTATGCCTTCTaGTGTTGCCACGGTATAAACACAGGATGGCTAGGCTACTATCCC +
Preference number: 1 (lower is better)
Translates to: LSLSPEPSGAKFYAF*CCHGINTGWLGYYP
Trigger: GGGATAGTAGCCTAGCCATCCTGTGTTTATACCGTGGCAACAGCAGAAGGCATAGAACTTAGCTCCAGATGGCTCTGGAGAGAGAGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 90 bp CGGACAGGATCAGACAACACCAGGTTCCACAAGAGACACACAGAGTaGCACAGTCACAAAACCGGAAATGCATCTTTGGTTCAATCCTGG +
Preference number: 1 (lower is better)
Translates to: RTGSDNTRFHKRHTE*HSHKTGNASLVQSW
Trigger: CCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTGTCTCTTGTGGAACCTGGTGTTGTCTGATCCTGTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR TCA 90 bp GATGAACCTGGCTTCCTGGCTACAGCTCTGGTCTCTGACCCCATCTaGAATAGTCAAAGGCCAGAAGATTCTGAGCTGTTCCATAACTTC +
Preference number: 1 (lower is better)
Translates to: DEPGFLATALVSDPI*NSQRPEDSELFHNF
Trigger: GAAGTTATGGAACAGCTCAGAATCTTCTGGCCTTTGACTATTTCAGATGGGGTCAGAGACCAGAGCTGTAGCCAGGAAGCCAGGTTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 90 bp GAGTGGCACAGTCACAAAACCGGAAATGCATCTTTGGTTCAATCCTaGAGGGGAAGGTGCAGATTACAGCATGGACTGAAAGCCTGTTTG +
Preference number: 1 (lower is better)
Translates to: EWHSHKTGNASLVQS*RGRCRLQHGLKACL
Trigger: CAAACAGGCTTTCAGTCCATGCTGTAATCTGCACCTTCCCCTCCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 90 bp CAAACTAGTTGTACATCTGACGCTGTTCTCGAAGCATTTGAAGGATaGGAGACTCTTTCTCCACAGGCTCGCACCAACACAGGCACACAT +
Preference number: 1 (lower is better)
Translates to: QTSCTSDAVLEAFEG*ETLSPQARTNTGTH
Trigger: ATGTGTGCCTGTGTTGGTGCGAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAGAACAGCGTCAGATGTACAACTAGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 90 bp ACATCAAATACGGAGAGCGTCTGTGGATGGCTCTCCTCTTCTCTCTaGTTAAAGAGTTCTATTTTCAGTGTCAAGTCCTGGGAGCTGAAC +
Preference number: 1 (lower is better)
Translates to: TSNTESVCGWLSSSL*LKSSIFSVKSWELN
Trigger: GTTCAGCTCCCAGGACTTGACACTGAAAATAGAACTCTTTAAGCAGAGAGAAGAGGAGAGCCATCCACAGACGCTCTCCGTATTTGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR GCA 90 bp CTCTCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCCATGCCCTGGTGCCTaGCTGTGTGGAGCCCTGTTC +
Preference number: 2 (lower is better)
Translates to: LSAGFHLCLRRHPIFLPVPCPGA*LCGALF
Trigger: GAACAGGGCTCCACACAGGCAGGCACCAGGGCATGG...GACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTTGGAGCCCTGTTCCGTaGCTGTCCTCACAGAGACCC +
Preference number: 2 (lower is better)
Translates to: SLRQAGHCGPPVATQASLWSPVP*LSSQRP
Trigger: GGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCA...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CAA 90 bp CTAGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTaGCCACCCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTC +
Preference number: 2 (lower is better)
Translates to: LGYYPLGRQATVVLL*PPKPAFRPSELQPL
Trigger: GAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR TCA 90 bp CTCTCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCTCAGGCTGGAAGGTGTaGTTCCCACAGTTCGCCCCC +
Preference number: 2 (lower is better)
Translates to: LSAGFHLCLRRHPIFLPVSGWKV*FPQFAP
Trigger: GGGGGCGAACTGTGGGAATCACACCTTCCAGCCTGA...GACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR TCA 90 bp CCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGATCAGGCTGGAAGGTGTaGTTCCCACAGTTCGCCCCC +
Preference number: 2 (lower is better)
Translates to: PLTVSYRTVRDTQSGGEGSGWKV*FPQFAP
Trigger: GGGGGCGAACTGTGGGAATCACACCTTCCAGCCTGA...TCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR TCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTCAGCACTTTGGAGACTaGGGCAGGAGGATCATGAGT +
Preference number: 2 (lower is better)
Translates to: SLRQAGHCGPPVATQASLQHFGD*GRRIMS
Trigger: ACTCATGATCCTCCTGCCTCAGTCTCCAAAGTGCTG...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTCTGGGTTCTCTCTGCTaGGTTCCATCTCTGTCTGAG +
Preference number: 2 (lower is better)
Translates to: SLRQAGHCGPPVATQASLLGSLC*VPSLSE
Trigger: CTCAGACAGAGATGGAACCCAGCAGAGAGAACCCAG...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTTCTTCGTCTTCCTCCTaGGTTCTCTCTGCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: SLRQAGHCGPPVATQASLSSSSS*VLSAGF
Trigger: GAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGA...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR GCA 90 bp ACCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGGAGGTTGTTCACCCATaGCCTGGTGCCTGCCTGTGT +
Preference number: 2 (lower is better)
Translates to: TTDGQLQNCERHTERRGGEVVHP*PGACLC
Trigger: ACACAGGCAGGCACCAGGGCATGGGTGAACAACCTC...CCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR TCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCACAGCACTTTGGAGACTaGGGCAGGAGGATCATGAGT +
Preference number: 2 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPQHFGD*GRRIMS
Trigger: ACTCATGATCCTCCTGCCTCAGTCTCCAAAGTGCTG...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CCA 90 bp GCGGGCACAGTACACAGGTACACATCCTACCAGCTTTGCAGAGCCAGATGCCTGGAACACCATCAGCTCTaGGAGAAAAGCCTGGCCTCC +
Preference number: 2 (lower is better)
Translates to: AGTVHRYTSYQLCRARCLEHHQL*EKSLAS
Trigger: GGAGGCCAGGCTTTTCTCCCAGAGCTGATGGTGTTC...CAGGCATCTGGCTCTGCAAAGCTGGTAGGATGTGTACCTGTGTACTGTGCCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR GCA 90 bp AAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCTCCTCTCCATGCCCTGGTGCCTaGCTGTGTGGAGCCCTGTTC +
Preference number: 2 (lower is better)
Translates to: KLKHVTSNTESVCGWLSSPCPGA*LCGALF
Trigger: GAACAGGGCTCCACACAGGCAGGCACCAGGGCATGG...AGAGGAGAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp AGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGTCTGGAAATCTGATTaGCCCAGCAGATGGAGGTGT +
Preference number: 2 (lower is better)
Translates to: RLLSLRQAGHCGPPVATQVWKSD*PSRWRC
Trigger: ACACCTCCATCTGCTGGGCCAATCAGATTTCCAGAC...TTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAAACCTGGTACCAGTCTaGAAATCTGATTGGCCCAGC +
Preference number: 2 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPNLVPV*KSDWPS
Trigger: GCTGGGCCAATCAGATTTCCAGACTGGTACCAGGTT...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CAA 90 bp CCTAGACTCGTCTGTCAGGTGTTTATGTGCGCCCCAGAACACAGCTaGTCTCCCTCCTGTTCTCATTTGCCTCTCAATGGGTCCACTGCC +
Preference number: 2 (lower is better)
Translates to: PRLVCQVFMCAPEHS*SPSCSHLPLNGSTA
Trigger: GGCAGTGGACCCATTGAGAGGCAAATGAGAACAGGAGGGAGACAAGCTGTGTTCTGGGGCGCACATAAACACCTGACAGACGAGTCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR GCA 90 bp CCGTCAAAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCCTGTGGTCCTCCTGTTaGCACCCAAGCCAGCCTTTC +
Preference number: 2 (lower is better)
Translates to: PSKLKHVTSNTESVCGWLLWSSC*HPSQPF
Trigger: GAAAGGCTGGCTTGGGTGGCAACAGGAGGACCACAG...GAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTTTGACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp TCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCAGTGGACTTTGAGTCTGTaGACTTCAGCTGATACAAGC +
Preference number: 2 (lower is better)
Translates to: SAGFHLCLRRHPIFLPVQWTLSL*TSADTS
Trigger: GCTTGTATCAGCTGAAGTCCACAGACTCAAAGTCCA...CTGGACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CCA 90 bp TCCTCCTGGACTTCACATGATGACAGATCGGCCGTTCCCATCAGTAGCCACAGGCAGCAGATGGAGGTGTaGTTTTTAGCTCTGAGCCCA +
Preference number: 2 (lower is better)
Translates to: SSWTSHDDRSAVPISSHRQQMEV*FLALSP
Trigger: TGGGCTCAGAGCTAAAAACCACACCTCCATCTGCTG...CCTGTGGCTACTGATGGGAACGGCCGATCTGTCATCATGTGAAGTCCAGGAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp TCCTCCTGGACTTCACATGATGACAGATCGGCCGTTCCCATCAGTAGCCACAGGAACCTGGTACCAGTCTaGAAATCTGATTGGCCCAGC +
Preference number: 2 (lower is better)
Translates to: SSWTSHDDRSAVPISSHRNLVPV*KSDWPS
Trigger: GCTGGGCCAATCAGATTTCCAGACTGGTACCAGGTT...CCTGTGGCTACTGATGGGAACGGCCGATCTGTCATCATGTGAAGTCCAGGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp CCGTCAAAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCTCTTCGTCTTCCTCCTaGGTTCTCTCTGCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: PSKLKHVTSNTESVCGWLSSSSS*VLSAGF
Trigger: GAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGA...GAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTTTGACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR GCA 90 bp TCCTCCTGGACTTCACATGATGACAGATCGGCCGTTCCCATCAGTAGCCACAGGGAATTCCCTGCTTCTTaGTGTCTCAACTCTGCTTTA +
Preference number: 2 (lower is better)
Translates to: SSWTSHDDRSAVPISSHREFPAS*CLNSAL
Trigger: TAAAGCAGAGTTGAGACAGCAAGAAGCAGGGAATTC...CCTGTGGCTACTGATGGGAACGGCCGATCTGTCATCATGTGAAGTCCAGGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp AGGACTAGAGCAGCTTTCTTCCAGGGTCAGCCAAATCCGTGTTCTCTTCTAGTTAGGGGAGGGACAACCTaGTACCAGTCTGGAAATCTG +
Preference number: 2 (lower is better)
Translates to: RTRAAFFQGQPNPCSLLVRGGTT*YQSGNL
Trigger: CAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCT...AACTAGAAGAGAACACGGATTTGGCTGACCCTGGAAGAAAGCTGCTCTAGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CAA 90 bp AAGAGACACACAGAGTGGCACAGTCACAAAACCGGAAATGCATCTTaGGTTCAATCCTGGAGGGGAAGGTGCAGATTACAGCATGGACTG +
Preference number: 2 (lower is better)
Translates to: KRHTEWHSHKTGNAS*VQSWRGRCRLQHGL
Trigger: CAGTCCATGCTGTAATCTGCACCTTCCCCTCCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTGTCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp CTCGAAGCATTTGAAGGATGGGAGACTCTTTCTCCACAGGCTCGCACCAACACACCAGATGCCTGCAGCTaGCAGTTATCTTTTAAAAGG +
Preference number: 2 (lower is better)
Translates to: LEAFEGWETLSPQARTNTPDACS*QLSFKR
Trigger: CCTTTTAAAAGATAACTGCCAGCTGCAGGCATCTGG...TGTGTTGGTGCGAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR GCA 90 bp AAAGACTCATTCATGAAGGACAGACAGTCATGGGTCAAACAGACAATACACTCTGAGGTTGTTCACCCATaGCCTGGTGCCTGCCTGTGT +
Preference number: 2 (lower is better)
Translates to: KDSFMKDRQSWVKQTIHSEVVHP*PGACLC
Trigger: ACACAGGCAGGCACCAGGGCATGGGTGAACAACCTC...AGAGTGTATTGTCTGTTTGACCCATGACTGTCTGTCCTTCATGAATGAGTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR GCA 90 bp CTGACGCTGTTCTCGAAGCATTTGAAGGATGGGAGACTCTTTCTCCACAGGCTCTCACAAAACCGGAAATaGATCTTTGGTTCAATCCTG +
Preference number: 2 (lower is better)
Translates to: LTLFSKHLKDGRLFLHRLSQNRK*IFGSIL
Trigger: CAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGA...GAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAGAACAGCGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAATGGAGCCCTGTTCCGTaGCTGTCCTCACAGAGACCC +
Preference number: 2 (lower is better)
Translates to: KERSLWTSSFNPQQISTQWSPVP*LSSQRP
Trigger: GGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCA...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR TCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAGGTTCCATCTCTGTCTaGGGCGCCATCCCATCTTCC +
Preference number: 2 (lower is better)
Translates to: KERSLWTSSFNPQQISTQGSISV*GAIPSS
Trigger: GGAAGATGGGATGGCGCCTCAGACAGAGATGGAACC...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR GCA 90 bp GAGACACACAGAGTGGCACAGTCACAAAACCGGAAATGCATCTTTGGTTCAATCTATGCCTTCTGCTGTTaGCACGGTATAAACACAGGA +
Preference number: 2 (lower is better)
Translates to: ETHRVAQSQNRKCIFGSIYAFCC*HGINTG
Trigger: TCCTGTGTTTATACCGTGGCAACAGCAGAAGGCATA...GATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp GACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAAAAGAAAAGGTCAGGGGGTCTGGAAATCTGATTaGCCCAGCAGATGGAGGTGT +
Preference number: 2 (lower is better)
Translates to: DKFVQSSANFNPKRKGQGVWKSD*PSRWRC
Trigger: ACACCTCCATCTGCTGGGCCAATCAGATTTCCAGAC...CCCCTGACCTTTTCTTTTTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CCA 90 bp TCGGCCGTTCCCATCAGTAGCCACAGGCTGACTAGAATCACAGGCAAAGACTCAAAAGAAAGATCTCTTTaGACAAGTTCGTTCAATCCT +
Preference number: 2 (lower is better)
Translates to: SAVPISSHRLTRITGKDSKERSL*TSSFNP
Trigger: AGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT...TGAGTCTTTGCCTGTGATTCTAGTCAGCCTGTGGCTACTGATGGGAACGGCCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp AAAGACTCATTCATGAAGGACAGACAGTCATGGGTCAAACAGACAATACACTCTATGAACCTGGCTTCCTaGCTACAGCTCTGGTCTCTG +
Preference number: 2 (lower is better)
Translates to: KDSFMKDRQSWVKQTIHSMNLAS*LQLWSL
Trigger: CAGAGACCAGAGCTGTAGCCAGGAAGCCAGGTTCAT...AGAGTGTATTGTCTGTTTGACCCATGACTGTCTGTCCTTCATGAATGAGTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAACAGCAGATGGAGGTGTaGTTTTTAGCTCTGAGCCCA +
Preference number: 2 (lower is better)
Translates to: KERSLWTSSFNPQQISTQQQMEV*FLALSP
Trigger: TGGGCTCAGAGCTAAAAACCACACCTCCATCTGCTG...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CCA 72 bp ATGCCCTGGTGCCTGCCTGTGTGGAGCCCTGTTCCGTaGCTGTCCTCACAGAGACCCAGAATCTTGCCATCC +
Preference number: 3 (lower is better)
Translates to: MPWCLPVWSPVP*LSSQRPRILPS
Trigger: GGATGGCAAGATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCACCAGGGCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CCA 72 bp CACAGAGCGGAGGGGAGGGACAACCTGGTACCAGTCTaGAAATCTGATTGGCCCAGCAGATGGAGGTGTGGT +
Preference number: 3 (lower is better)
Translates to: HRAEGRDNLVPV*KSDWPSRWRCG
Trigger: ACCACACCTCCATCTGCTGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CCA 72 bp TGTGAGAGACACACAGAGCGGAGGGGAGGGACAACCTaGTACCAGTCTGGAAATCTGATTGGCCCAGCAGAT +
Preference number: 3 (lower is better)
Translates to: CERHTERRGGTT*YQSGNLIGPAD
Trigger: ATCTGCTGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGTGTGTCTCTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR-3UTR CAA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGTAAGTGTGTGGACTTaGAGTCTGTGGACTTCAGCT +
Preference number: 3 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPVSVWT*SLWTSA
Trigger: AGCTGAAGTCCACAGACTCAAAGTCCACACACTTAC...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR TCA 72 bp GGAGGGGAGGGACAACCTGGTACCAGTCTGGAAATCTaGTTGGCCCAGCAGATGGAGGTGTGGTTTTTAGCT +
Preference number: 3 (lower is better)
Translates to: GGEGQPGTSLEI*LAQQMEVWFLA
Trigger: AGCTAAAAACCACACCTCCATCTGCTGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR TCA 72 bp GTCAAGTCCTGGGAGCTGAACGGAAGCCATGCTGAATaGAGAACACCATCAGCTCTGGGAGAAAAGCCTGGC +
Preference number: 3 (lower is better)
Translates to: VKSWELNGSHAE*RTPSALGEKPG
Trigger: GCCAGGCTTTTCTCCCAGAGCTGATGGTGTTCTTCATTCAGCATGGCTTCCGTTCAGCTCCCAGGACTTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 72 bp CCCCAGAACACAGCTTGTCTCCCTCCTGTTCTCATTTaGCTCTCAATGGGTCCACTGCCTACTGAGGACTCA +
Preference number: 3 (lower is better)
Translates to: PQNTACLPPVLI*LSMGPLPTEDS
Trigger: TGAGTCCTCAGTAGGCAGTGGACCCATTGAGAGGCAAATGAGAACAGGAGGGAGACAAGCTGTGTTCTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 72 bp ACGCGGTTTCCTAGACTCGTCTGTCAGGTGTTTATGTaGGCCCCAGAACACAGCTTGTCTCCCTCCTGTTCT +
Preference number: 3 (lower is better)
Translates to: TRFPRLVCQVFM*APEHSLSPSCS
Trigger: AGAACAGGAGGGAGACAAGCTGTGTTCTGGGGCGCACATAAACACCTGACAGACGAGTCTAGGAAACCGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 72 bp ACGGAAGCCATGCTGAATGAAGAACACCATCAGCTCTaGGAGAAAAGCCTGGCCTCCTCCTGTAATGGGTCC +
Preference number: 3 (lower is better)
Translates to: TEAMLNEEHHQL*EKSLASSCNGS
Trigger: GGACCCATTACAGGAGGAGGCCAGGCTTTTCTCCCAGAGCTGATGGTGTTCTTCATTCAGCATGGCTTCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CAA 90 bp GCGGGCACAGTACACAGGTACACATCCTACCAGCTTTGCAGAGCCAGATGCCTGCGAATTCCCTGCTTCTaGCTGTCTCAACTCTGCTTT +
Preference number: 3 (lower is better)
Translates to: AGTVHRYTSYQLCRARCLRIPCF*LSQLCF
Trigger: AAAGCAGAGTTGAGACAGCAAGAAGCAGGGAATTCG...CAGGCATCTGGCTCTGCAAAGCTGGTAGGATGTGTACCTGTGTACTGTGCCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR TCA 72 bp CCAAATCCGTGTTCTCTTCTAGTTCAGTCAGAGCTCTaGGAGGCCAAAGGAAGCCGCCCGCCACCAGTAAAT +
Preference number: 3 (lower is better)
Translates to: PNPCSLLVQSEL*EAKGSRPPPVN
Trigger: ATTTACTGGTGGCGGGCGGCTTCCTTTGGCCTCTCAGAGCTCTGACTGAACTAGAAGAGAACACGGATTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR TCA 72 bp CAGTGTCAAGTCCTGGGAGCTGAACGGAAGCCATGCTaGATGAAGAACACCATCAGCTCTGGGAGAAAAGCC +
Preference number: 3 (lower is better)
Translates to: QCQVLGAERKPC*MKNTISSGRKA
Trigger: GGCTTTTCTCCCAGAGCTGATGGTGTTCTTCATTCAGCATGGCTTCCGTTCAGCTCCCAGGACTTGACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 72 bp TCCCTCCTGTTCTCATTTGCCTCTCAATGGGTCCACTaGCTACTGAGGACTCAGGTGGGTAACCTGAGTTCA +
Preference number: 3 (lower is better)
Translates to: SLLFSFASQWVH*LLRTQVGNLSS
Trigger: TGAACTCAGGTTACCCACCTGAGTCCTCAGTAGGCAGTGGACCCATTGAGAGGCAAATGAGAACAGGAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CAA 90 bp TCCTCCTGGACTTCACATGATGACAGATCGGCCGTTCCCATCAGTAGCCACAGGGTAAGTGTGTGGACTTaGAGTCTGTGGACTTCAGCT +
Preference number: 3 (lower is better)
Translates to: SSWTSHDDRSAVPISSHRVSVWT*SLWTSA
Trigger: AGCTGAAGTCCACAGACTCAAAGTCCACACACTTAC...CCTGTGGCTACTGATGGGAACGGCCGATCTGTCATCATGTGAAGTCCAGGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CAA 90 bp CACACAGAGTGGCACAGTCACAAAACCGGAAATGCATCTTTGGTTCAATCCTGGACTGTGGTCCTCCTGTaGCCACCCAAGCCAGCCTTT +
Preference number: 3 (lower is better)
Translates to: HTEWHSHKTGNASLVQSWTVVLL*PPKPAF
Trigger: AAAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGT...CCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CAA 90 bp CCGTCAAAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCGAGTTTGAAGCCAGCTaGGGCTACTTAATGAGACCC +
Preference number: 3 (lower is better)
Translates to: PSKLKHVTSNTESVCGWLEFEAS*GYLMRP
Trigger: GGGTCTCATTAAGTAGCCCAAGCTGGCTTCAAACTC...GAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTTTGACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CAA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACAGGAGGATCATGAGTTaGAAGCCAGCTTGGGCTACT +
Preference number: 3 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHRRIMS*KPAWAT
Trigger: AGTAGCCCAAGCTGGCTTCAAACTCATGATCCTCCT...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR GCA 72 bp TCTCCAGAGCCATCTGGAGCTAAGTTCTATGCCTTCTaGTGTTGCCACGGTATAAACACAGGATGGCTAGGC +
Preference number: 3 (lower is better)
Translates to: SPEPSGAKFYAF*CCHGINTGWLG
Trigger: GCCTAGCCATCCTGTGTTTATACCGTGGCAACAGCAGAAGGCATAGAACTTAGCTCCAGATGGCTCTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 72 bp GAGACACACAGAGTGGCACAGTCACAAAACCGGAAATaGATCTTTGGTTCAATCCTGGAGGGGAAGGTGCAG +
Preference number: 3 (lower is better)
Translates to: ETHRVAQSQNRK*IFGSILEGKVQ
Trigger: CTGCACCTTCCCCTCCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 72 bp ACCAAGATGATGAACCTGGCTTCCTGGCTACAGCTCTaGTCTCTGACCCCATCTGAAATAGTCAAAGGCCAG +
Preference number: 3 (lower is better)
Translates to: TKMMNLASWLQL*SLTPSEIVKGQ
Trigger: CTGGCCTTTGACTATTTCAGATGGGGTCAGAGACCAGAGCTGTAGCCAGGAAGCCAGGTTCATCATCTTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 72 bp TGTTGCCACCCAAGCCAGCCTTTCGGCCATCTGAGCTaGAGCCTCTCAGAAAAACAAAAACACGTGAATTTG +
Preference number: 3 (lower is better)
Translates to: CCHPSQPFGHLS*SLSEKQKHVNL
Trigger: CAAATTCACGTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGGGTGGCAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CCA 72 bp TGTACATCTGACGCTGTTCTCGAAGCATTTGAAGGATaGGAGACTCTTTCTCCACAGGCTCGCACCAACACA +
Preference number: 3 (lower is better)
Translates to: CTSDAVLEAFEG*ETLSPQARTNT
Trigger: TGTGTTGGTGCGAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAGAACAGCGTCAGATGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 72 bp ACGGAGAGCGTCTGTGGATGGCTCTCCTCTTCTCTCTaGTTAAAGAGTTCTATTTTCAGTGTCAAGTCCTGG +
Preference number: 3 (lower is better)
Translates to: TESVCGWLSSSL*LKSSIFSVKSW
Trigger: CCAGGACTTGACACTGAAAATAGAACTCTTTAAGCAGAGAGAAGAGGAGAGCCATCCACAGACGCTCTCCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR GCA 72 bp GGTACACATCCTACCAGCTTTGCAGAGCCAGATGCCTaGAGCTGGCAGTTATCTTTTAAAAGGACTCTTCAC +
Preference number: 3 (lower is better)
Translates to: GTHPTSFAEPDA*SWQLSFKRTLH
Trigger: GTGAAGAGTCCTTTTAAAAGATAACTGCCAGCTGCAGGCATCTGGCTCTGCAAAGCTGGTAGGATGTGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR-3UTR CAA 90 bp AAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCTCCTCTTACAAGCGTGGGACTTaGTGTGGCAGGTATAAAAGA +
Preference number: 3 (lower is better)
Translates to: KLKHVTSNTESVCGWLSSYKRGT*CGRYKR
Trigger: TCTTTTATACCTGCCACACAAAGTCCCACGCTTGTA...AGAGGAGAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR CCA 72 bp AGTCACAAAACCGGAAATGCATCTTTGGTTCAATCCTaGAGGGGAAGGTGCAGATTACAGCATGGACTGAAA +
Preference number: 3 (lower is better)
Translates to: SHKTGNASLVQS*RGRCRLQHGLK
Trigger: TTTCAGTCCATGCTGTAATCTGCACCTTCCCCTCCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
3UTR TCA 72 bp GAGGAAAGAAAAACCTGTCAAAACGTTGCACAGGAATaGGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTT +
Preference number: 3 (lower is better)
Translates to: EERKTCQNVAQE*AFNESSSSSWV
Trigger: AACCCAGGAGGAAGACGAAGACTCATTAAACGCTCATTCCTGTGCAACGTTTTGACAGGTTTTTCTTTCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CCA 72 bp ACAGGCAAAGACTCATTCATGAAGGACAGACAGTCATaGGTCAAACAGACAATACACTCTGCACTTAACAAA +
Preference number: 3 (lower is better)
Translates to: TGKDSFMKDRQS*VKQTIHSALNK
Trigger: TTTGTTAAGTGCAGAGTGTATTGTCTGTTTGACCCATGACTGTCTGTCCTTCATGAATGAGTCTTTGCCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR GCA 90 bp AGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGAGGGGGCTGTGGGCTaGAGAGGGGACATGCTGGCG +
Preference number: 4 (lower is better)
Translates to: RLLSLRQAGHCGPPVATQEGAVG*RGDMLA
Trigger: CGCCAGCATGTCCCCTCTGCAGCCCACAGCCCCCTC...TTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTCTCTCTGAGGAAGGCTaGAGGCTCTGGTGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: SLRQAGHCGPPVATQASLLSEEG*RLWCRF
Trigger: GAAGCGGCACCAGAGCCTGCAGCCTTCCTCAGAGAG...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CTCTCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCCTTGGGGAGGATGCTaGCACTTCCCGGCCCTGGTT +
Preference number: 4 (lower is better)
Translates to: LSAGFHLCLRRHPIFLPVPWGGC*HFPALV
Trigger: AACCAGGGCCGGGAAGTGCCAGCATCCTCCCCAAGG...GACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCATTGCCCACGCGCTTGTaGTGCTGGAAGTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPLPTRL*CWKSRS
Trigger: GCTCCGGGACTTCCAGCACCACAAGCGCGTGGGCAA...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp TCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCAGGCAGGGGCTCTTCCTTaGGGAGGATGCTGGCACTTC +
Preference number: 4 (lower is better)
Translates to: SAGFHLCLRRHPIFLPVQAGALP*GGCWHF
Trigger: GAAGTGCCAGCATCCTCCCCAAGGAAGAGCCCCTGC...CTGGACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp TCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCAGTGTCAAAGGAGAGGCTaGAGGGGGCTGTGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: SAGFHLCLRRHPIFLPVQCQRRG*RGLWAA
Trigger: TGCAGCCCACAGCCCCCTCCAGCCTCTCCTTTGACA...CTGGACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CAA 72 bp TATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTaGCCACCCAAGCCAGCCTTTCGGCCATCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: YPLGRQATVVLL*PPKPAFRPSEL
Trigger: CAGCTCAGATGGCCGAAAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATATCTTCAAGTCTCTGTaGACCACCCCCGCACGGTGC +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNIFKSL*TTPARC
Trigger: GCACCGTGCGGGGGTGGTTCACAGAGACTTGAAGAT...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATTTTGTCGGGGAAGCCTaGCTTGGAGGCCTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNFVGEA*LGGLPV
Trigger: GACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAAA...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGGCTGCAGGCTCTGGTaGCGCTTCCTCAGCATCTGT +
Preference number: 4 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPGCRLW*RFLSIC
Trigger: ACAGATGCTGAGGAAGCGGCACCAGAGCCTGCAGCC...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCATGTCAAAGGAGAGGCTaGAGGGGGCTGTGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPCQRRG*RGLWAA
Trigger: TGCAGCCCACAGCCCCCTCCAGCCTCTCCTTTGACA...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp TGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATCGTTCCACCGCAGAGATaGGTTGCCGGATGTATCTGC +
Preference number: 4 (lower is better)
Translates to: CLPVWSPVPWLSSQRPRIVPPQR*VAGCIC
Trigger: GCAGATACATCCGGCAACTCATCTCTGCGGTGGAAC...GATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp CTCGAAGCATTTGAAGGATGGGAGACTCTTTCTCCACAGGCTCGCACCAACACACCCACGCGCTTGTGGTaGTGGAAGTCCCGGAGCCGC +
Preference number: 4 (lower is better)
Translates to: LEAFEGWETLSPQARTNTPTRLW*WKSRSR
Trigger: GCGGCTCCGGGACTTCCAGCACCACAAGCGCGTGGG...TGTGTTGGTGCGAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR GCA 90 bp TGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATCTCAGCATCTGTCCGATaGCCATCATGGGGAACCGTC +
Preference number: 4 (lower is better)
Translates to: CLPVWSPVPWLSSQRPRISASVR*PSWGTV
Trigger: GACGGTTCCCCATGATGGGCATCGGACAGATGCTGA...GATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCGAGGGGGCTGTGGGCTaGAGAGGGGACATGCTGGCG +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIEGAVG*RGDMLA
Trigger: CGCCAGCATGTCCCCTCTGCAGCCCACAGCCCCCTC...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCGCCCCTCGCGCACCTTaGCGAAGGAGCCCTCTCCCA +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIAPRAP*RRSPLP
Trigger: TGGGAGAGGGCTCCTTCGCCAAGGTGCGCGAGGGGC...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATTGTGCAGCACCACGCTaGGACTCAGGTCTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNCAAPR*DSGLPK
Trigger: CTTTGGAAGACCTGAGTCCCAGCGTGGTGCTGCACA...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCATGTCCAGGAGCTGTGTaGTGTTGGGGTGTCGGATCA +
Preference number: 4 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPCPGAV*CWGVGS
Trigger: TGATCCGACACCCCAACATCACACAGCTCCTGGACA...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp CTCTCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCGTAGATCTTGTGCATaGGGTTGCCACCAGGACACA +
Preference number: 4 (lower is better)
Translates to: LSAGFHLCLRRHPIFLPVRRSCA*GCHQDT
Trigger: TGTGTCCTGGTGGCAACCTCATGCACAAGATCTACG...GACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp TCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCAGTTGTCCACCATCTTCTaGTACAGAGCCCTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: SAGFHLCLRRHPIFLPVQLSTIF*YRALRL
Trigger: CAGCCTGAGGGCTCTGTATCAGAAGATGGTGGACAA...CTGGACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATAGGCCTTCCTGTCTTTaGGCAGGGCTTTGGTACTCT +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNRPSCL*AGLWYS
Trigger: AGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCT...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp CTCGAAGCATTTGAAGGATGGGAGACTCTTTCTCCACAGGCTCGCACCAACACATCTCCCGTCAGCACGTaGAGCCCCTCGCGCACCTTG +
Preference number: 4 (lower is better)
Translates to: LEAFEGWETLSPQARTNTSPVST*SPSRTL
Trigger: CAAGGTGCGCGAGGGGCTGCACGTGCTGACGGGAGA...TGTGTTGGTGCGAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR GCA 90 bp GGGGGCGGGCACAGTACACAGGTACACATCCTACCAGCTTTGCAGAGCCAGATGCGATTCGCCAGCGCTTaGTGGATATTCGGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: GGGHSTQVHILPALQSQMRFASA*WIFGLF
Trigger: GAAGAGGCCGAATATCCAGCAAGCGCTGGCGAATCG...CATCTGGCTCTGCAAAGCTGGTAGGATGTGTACCTGTGTACTGTGCCCGCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR GCA 90 bp AGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAACGATTCGCCAGCGCTTaGTGGATATTCGGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: RLLSLRQAGHCGPPVATQRFASA*WIFGLF
Trigger: GAAGAGGCCGAATATCCAGCAAGCGCTGGCGAATCG...TTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTGCTCCTTGGTGGCTCTaGACTTCTCTATCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: SLRQAGHCGPPVATQASLAPWWL*TSLSGR
Trigger: TCTACCAGATAGAGAAGTGCAGAGCCACCAAGGAGC...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp ACAGAGCGGAGGGGAGGGACAACCTGGTACCAGTCTGGAAATCTGATTGGCCCATGTCGGATCATCTGCTaGATCTGCCCCTCTCGACGC +
Preference number: 4 (lower is better)
Translates to: TERRGGTTWYQSGNLIGPCRIIC*ICPSRR
Trigger: GCGTCGAGAGGGGCAGATCCAGCAGATGATCCGACA...TGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATTGGTGTCCTGGGAGGTaGGACAGGGATGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNWCPGR*DRDEFH
Trigger: ATGGAATTCATCCCTGTCCCACCTCCCAGGACACCA...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CAA 72 bp AAAGGAAGCCGCCCGCCACCAGTAAATGAGAGGCAGTaGTACTGTGTCTCAGCCCTCACTGGCAAAGGCCGG +
Preference number: 4 (lower is better)
Translates to: KGSRPPPVNERQ*YCVSALTGKGR
Trigger: CCGGCCTTTGCCAGTGAGGGCTGAGACACAGTACAACTGCCTCTCATTTACTGGTGGCGGGCGGCTTCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp GGGGGCGGGCACAGTACACAGGTACACATCCTACCAGCTTTGCAGAGCCAGATGCGTAGATCTTGTGCATaGGGTTGCCACCAGGACACA +
Preference number: 4 (lower is better)
Translates to: GGGHSTQVHILPALQSQMRRSCA*GCHQDT
Trigger: TGTGTCCTGGTGGCAACCTCATGCACAAGATCTACG...CATCTGGCTCTGCAAAGCTGGTAGGATGTGTACCTGTGTACTGTGCCCGCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCATCCTGTTGGGATAGGTaGCATTGCAGGGCACCTTTC +
Preference number: 4 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPSCWDR*HCRAPF
Trigger: GAAAGGTGCCCTGCAATGTCACCTATCCCAACAGGA...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp AGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAATCATCTGCTGGATCTaGCCCTCTCGACGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: RLLSLRQAGHCGPPVATQIICWI*PSRRRF
Trigger: AAACCTGCGTCGAGAGGGGCAGATCCAGCAGATGAT...TTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACGGGCTCCCCAGAGGCTaGAGGAGGCCATTACTGGGA +
Preference number: 4 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHGLPRG*RRPLLG
Trigger: TCCCAGTAATGGCCTCCTGCAGCCTCTGGGGAGCCC...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGAGGGTCCCCGTCAGCATaGCATACATGTTCACGCCTA +
Preference number: 4 (lower is better)
Translates to: PLTVSYRTVRDTQSGGEGGSPSA*HTCSRL
Trigger: TAGGCGTGAACATGTATGCCATGCTGACGGGGACCC...TCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACCCTTGGGGAGGATGCTaGCACTTCCCGGCCCTGGTT +
Preference number: 4 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHPWGGC*HFPALV
Trigger: AACCAGGGCCGGGAAGTGCCAGCATCCTCCCCAAGG...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATGACAGCAGTTCTATGTaGTCCTCTCGATCCACAGAC +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNDSSSM*SSRSTD
Trigger: GTCTGTGGATCGAGAGGACCACATAGAACTGCTGTC...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCGGGAACGGGAGGCGGTaGACACACACCCTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIGNGRR*THTLLF
Trigger: AAAGAGGAGGGTGTGTGTTCACCGCCTCCCGTTCCC...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp ACAGAGCGGAGGGGAGGGACAACCTGGTACCAGTCTGGAAATCTGATTGGCCCAATCATCTGCTGGATCTaGCCCTCTCGACGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: TERRGGTTWYQSGNLIGPIICWI*PSRRRF
Trigger: AAACCTGCGTCGAGAGGGGCAGATCCAGCAGATGAT...TGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp CTCGAAGCATTTGAAGGATGGGAGACTCTTTCTCCACAGGCTCGCACCAACACAGGCTGCAGGCTCTGGTaGCGCTTCCTCAGCATCTGT +
Preference number: 4 (lower is better)
Translates to: LEAFEGWETLSPQARTNTGCRLW*RFLSIC
Trigger: ACAGATGCTGAGGAAGCGGCACCAGAGCCTGCAGCC...TGTGTTGGTGCGAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCGCCCCTGTGGAGAGCTaGGTCGGCAGGGGATTCATT +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIAPVES*VGRGFI
Trigger: AATGAATCCCCTGCCGACCCAGCTCTCCACAGGGGC...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp ACCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGTGGTGTCCTGGGAGGTaGGACAGGGATGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: TTDGQLQNCERHTERRGGWCPGR*DRDEFH
Trigger: ATGGAATTCATCCCTGTCCCACCTCCCAGGACACCA...CCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATTTTCTTTACAATCCTTaGTGTCCTGGGAGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNFLYNP*CPGRWD
Trigger: GTCCCACCTCCCAGGACACCAAGGATTGTAAAGAAA...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp TACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGAATGCAGTGGAGTTTaGAGAGGTGAGGTACTTCCG +
Preference number: 4 (lower is better)
Translates to: YYPLGRQATVVLLLPPKPECSGV*RGEVLP
Trigger: CGGAAGTACCTCACCTCTCCAAACTCCACTGCATTC...TGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CTCTCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCCTGTTCTTTTCTTCGTaGGCAAAAGAGACCAGCGTG +
Preference number: 4 (lower is better)
Translates to: LSAGFHLCLRRHPIFLPVLFFSS*AKETSV
Trigger: CACGCTGGTCTCTTTTGCCCACGAAGAAAAGAACAG...GACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CAA 72 bp GGCGGGCACAGTACACAGGTACACATCCTACCAGCTTaGCAGAGCCAGATGCCTGCAGCTGGCAGTTATCTT +
Preference number: 4 (lower is better)
Translates to: GGHSTQVHILPA*QSQMPAAGSYL
Trigger: AAGATAACTGCCAGCTGCAGGCATCTGGCTCTGCAAAGCTGGTAGGATGTGTACCTGTGTACTGTGCCCGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp ACCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGTGCCACACTGTGTGCTaGATGGATCCGAGTAACCTA +
Preference number: 4 (lower is better)
Translates to: TTDGQLQNCERHTERRGGCHTVC*MDPSNL
Trigger: TAGGTTACTCGGATCCATTCAGCACACAGTGTGGCA...CCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCTACTCTGGAGCTGTGTaGTCAGCGAGGGCGATGGCT +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIYSGAV*SARAMA
Trigger: AGCCATCGCCCTCGCTGATCACACAGCTCCAGAGTA...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp CTGACGCTGTTCTCGAAGCATTTGAAGGATGGGAGACTCTTTCTCCACAGGCTCTTTGTCGGGGAAGCCTaGCTTGGAGGCCTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: LTLFSKHLKDGRLFLHRLFVGEA*LGGLPV
Trigger: GACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAAA...GAGCCTGTGGAGAAAGAGTCTCCCATCCTTCAAATGCTTCGAGAACAGCGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR GCA 90 bp CCGTCAAAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCACCGCAGAGATGAGTTaGCGGATGTATCTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: PSKLKHVTSNTESVCGWLTAEMS*RMYLRA
Trigger: GGCCCGCAGATACATCCGGCAACTCATCTCTGCGGT...GAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTTTGACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR GCA 90 bp ACCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGCGGCAGGGGATTCATTaGTTTGTCCACCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: TTDGQLQNCERHTERRGGRQGIH*FVHHLL
Trigger: CAGAAGATGGTGGACAAAGCAATGAATCCCCTGCCG...CCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTTACCTGAAAGAAATATaGCCAATCACCCACACCCAT +
Preference number: 4 (lower is better)
Translates to: SLRQAGHCGPPVATQASLYLKEI*PITHTH
Trigger: ATGGGTGTGGGTGATTGGGCATATTTCTTTCAGGTA...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CCGTCAAAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCTGTCGGATCATCTGCTaGATCTGCCCCTCTCGACGC +
Preference number: 4 (lower is better)
Translates to: PSKLKHVTSNTESVCGWLCRIIC*ICPSRR
Trigger: GCGTCGAGAGGGGCAGATCCAGCAGATGATCCGACA...GAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTTTGACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp AAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCTCCTCTGCCCCTGTGGAGAGCTaGGTCGGCAGGGGATTCATT +
Preference number: 4 (lower is better)
Translates to: KLKHVTSNTESVCGWLSSAPVES*VGRGFI
Trigger: AATGAATCCCCTGCCGACCCAGCTCTCCACAGGGGC...AGAGGAGAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp TGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATCTTATCCTGCACAGCATaGAATTCAAAGTCCCTCGTC +
Preference number: 4 (lower is better)
Translates to: CLPVWSPVPWLSSQRPRILSCTA*NSKSLV
Trigger: GACGAGGGACTTTGAATTCCATGCTGTGCAGGATAA...GATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATTTATCCTGCACAGCATaGAATTCAAAGTCCCTCGTC +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNLSCTA*NSKSLV
Trigger: GACGAGGGACTTTGAATTCCATGCTGTGCAGGATAA...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATTCTTGTCCAACTTCTTaGAAAACGGACGGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: VPACVEPCSVAVLTETQNSCPTS*KTDGGE
Trigger: TTCTCCACCGTCCGTTTTCCAAGAAGTTGGACAAGA...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGAGAATGCAGTGGAGTTTaGAGAGGTGAGGTACTTCCG +
Preference number: 4 (lower is better)
Translates to: PLTVSYRTVRDTQSGGEGECSGV*RGEVLP
Trigger: CGGAAGTACCTCACCTCTCCAAACTCCACTGCATTC...TCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCTGCTCTTCACACAGTTaGGGCTCCCCAGAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSICSSHS*GSPEAA
Trigger: TGCAGCCTCTGGGGAGCCCCAACTGTGTGAAGAGCA...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CAA 72 bp GGCAGGTATAAAAGAATAAAGGATGCTCCCGTGAGGTaGTTCACCCATGCCCTGGTGCCTGCCTGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: GRYKRIKDAPVR*FTHALVPACVE
Trigger: CTCCACACAGGCAGGCACCAGGGCATGGGTGAACAACCTCACGGGAGCATCCTTTATTCTTTTATACCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTTTGGGCTTTTTATCCTaGACAGCATGGAATTCAAAG +
Preference number: 4 (lower is better)
Translates to: SLRQAGHCGPPVATQASLLGFLS*TAWNSK
Trigger: CTTTGAATTCCATGCTGTGCAGGATAAAAAGCCCAA...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACGGGTCCCCGTCAGCATaGCATACATGTTCACGCCTA +
Preference number: 4 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHGSPSA*HTCSRL
Trigger: TAGGCGTGAACATGTATGCCATGCTGACGGGGACCC...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACTGTGCAGCACCACGCTaGGACTCAGGTCTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHCAAPR*DSGLPK
Trigger: CTTTGGAAGACCTGAGTCCCAGCGTGGTGCTGCACA...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp CCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGATTTCTTTACAATCCTTaGTGTCCTGGGAGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: PLTVSYRTVRDTQSGGEGFLYNP*CPGRWD
Trigger: GTCCCACCTCCCAGGACACCAAGGATTGTAAAGAAA...TCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp AGGACTAGAGCAGCTTTCTTCCAGGGTCAGCCAAATCCGTGTTCTCTTCTAGTTGCAGGGGCTCTTCCTTaGGGAGGATGCTGGCACTTC +
Preference number: 4 (lower is better)
Translates to: RTRAAFFQGQPNPCSLLVAGALP*GGCWHF
Trigger: GAAGTGCCAGCATCCTCCCCAAGGAAGAGCCCCTGC...AACTAGAAGAGAACACGGATTTGGCTGACCCTGGAAGAAAGCTGCTCTAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp CCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGACTGTTCTTTTCTTCGTaGGCAAAAGAGACCAGCGTG +
Preference number: 4 (lower is better)
Translates to: PLTVSYRTVRDTQSGGEGLFFSS*AKETSV
Trigger: CACGCTGGTCTCTTTTGCCCACGAAGAAAAGAACAG...TCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp TGCTTAAAGAGTTCTATTTTCAGTGTCAAGTCCTGGGAGCTGAACGGAAGCCATGCTTCCTGCTGCCGATaGGGTAGTTGCCCACGCGCT +
Preference number: 4 (lower is better)
Translates to: CLKSSIFSVKSWELNGSHASCCR*GSCPRA
Trigger: AGCGCGTGGGCAACTACCTCATCGGCAGCAGGAAGC...ATGGCTTCCGTTCAGCTCCCAGGACTTGACACTGAAAATAGAACTCTTTAAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCCAGGACACAGCTCCATaGCCAGGTAGTAGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIQDTAP*PGSSCS
Trigger: AGAACAGCTACTACCTGGTCATGGAGCTGTGTCCTG...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCTCCTGTTGGGATAGGTaGCATTGCAGGGCACCTTTC +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSISCWDR*HCRAPF
Trigger: GAAAGGTGCCCTGCAATGTCACCTATCCCAACAGGA...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp CCGTCAAAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCGGCGATGGCTGTTTGTaGGAAGGCAGATTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: PSKLKHVTSNTESVCGWLGDGCL*EGRFLS
Trigger: GGACAAGAATCTGCCTTCTCACAAACAGCCATCGCC...GAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTTTGACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp CCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGATCTTGTCCAACTTCTTaGAAAACGGACGGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: PLTVSYRTVRDTQSGGEGSCPTS*KTDGGE
Trigger: TTCTCCACCGTCCGTTTTCCAAGAAGTTGGACAAGA...TCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp AGGACTAGAGCAGCTTTCTTCCAGGGTCAGCCAAATCCGTGTTCTCTTCTAGTTTGCTCTTCACACAGTTaGGGCTCCCCAGAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: RTRAAFFQGQPNPCSLLVCSSHS*GSPEAA
Trigger: TGCAGCCTCTGGGGAGCCCCAACTGTGTGAAGAGCA...AACTAGAAGAGAACACGGATTTGGCTGACCCTGGAAGAAAGCTGCTCTAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp AGGACTAGAGCAGCTTTCTTCCAGGGTCAGCCAAATCCGTGTTCTCTTCTAGTTTGTCCAGGAGCTGTGTaGTGTTGGGGTGTCGGATCA +
Preference number: 4 (lower is better)
Translates to: RTRAAFFQGQPNPCSLLVCPGAV*CWGVGS
Trigger: TGATCCGACACCCCAACATCACACAGCTCCTGGACA...AACTAGAAGAGAACACGGATTTGGCTGACCCTGGAAGAAAGCTGCTCTAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp GAGACACACAGAGTGGCACAGTCACAAAACCGGAAATGCATCTTTGGTTCAATCATCTTCAAGTCTCTGTaGACCACCCCCGCACGGTGC +
Preference number: 4 (lower is better)
Translates to: ETHRVAQSQNRKCIFGSIIFKSL*TTPARC
Trigger: GCACCGTGCGGGGGTGGTTCACAGAGACTTGAAGAT...GATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACTGCCACACTGTGTGCTaGATGGATCCGAGTAACCTA +
Preference number: 4 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHCHTVC*MDPSNL
Trigger: TAGGTTACTCGGATCCATTCAGCACACAGTGTGGCA...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCCGGCAGGGGATTCATTaGTTTGTCCACCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIRQGIH*FVHHLL
Trigger: CAGAAGATGGTGGACAAAGCAATGAATCCCCTGCCG...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp TGCTTAAAGAGTTCTATTTTCAGTGTCAAGTCCTGGGAGCTGAACGGAAGCCATCTCTCTGAGGAAGGCTaGAGGCTCTGGTGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: CLKSSIFSVKSWELNGSHLSEEG*RLWCRF
Trigger: GAAGCGGCACCAGAGCCTGCAGCCTTCCTCAGAGAG...ATGGCTTCCGTTCAGCTCCCAGGACTTGACACTGAAAATAGAACTCTTTAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp AAAGACTCATTCATGAAGGACAGACAGTCATGGGTCAAACAGACAATACACTCTACGCGCTTGTGGTGCTaGAAGTCCCGGAGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: KDSFMKDRQSWVKQTIHSTRLWC*KSRSRS
Trigger: CGAGCGGCTCCGGGACTTCCAGCACCACAAGCGCGT...AGAGTGTATTGTCTGTTTGACCCATGACTGTCTGTCCTTCATGAATGAGTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCGACAGCAGTTCTATGTaGTCCTCTCGATCCACAGAC +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIDSSSM*SSRSTD
Trigger: GTCTGTGGATCGAGAGGACCACATAGAACTGCTGTC...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp ACAGAGCGGAGGGGAGGGACAACCTGGTACCAGTCTGGAAATCTGATTGGCCCAACCTTGATAGCTACCTaGAAGAAATATGCCCAATCA +
Preference number: 4 (lower is better)
Translates to: TERRGGTTWYQSGNLIGPTLIAT*KKYAQS
Trigger: TGATTGGGCATATTTCTTTCAGGTAGCTATCAAGGT...TGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp ACCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGGGGTCTTGTAGCAGATaGTATCTTGGATATCTGATT +
Preference number: 4 (lower is better)
Translates to: TTDGQLQNCERHTERRGGGSCSR*YLGYLI
Trigger: AATCAGATATCCAAGATAGCATCTGCTACAAGACCC...CCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGGT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp ACAGAGCGGAGGGGAGGGACAACCTGGTACCAGTCTGGAAATCTGATTGGCCCATTGGGCTTTTTATCCTaGACAGCATGGAATTCAAAG +
Preference number: 4 (lower is better)
Translates to: TERRGGTTWYQSGNLIGPLGFLS*TAWNSK
Trigger: CTTTGAATTCCATGCTGTGCAGGATAAAAAGCCCAA...TGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CCA 90 bp GAGCGTTTAATGAGTCTTCGTCTTCCTCCTGGGTTCTCTCTGCTGGGTTCCATCCAAAAGAGACCAGCGTaGAATGCAGTGGAGTTTGGA +
Preference number: 4 (lower is better)
Translates to: ERLMSLRLPPGFSLLGSIQKRPA*NAVEFG
Trigger: TCCAAACTCCACTGCATTCCACGCTGGTCTCTTTTG...GATGGAACCCAGCAGAGAGAACCCAGGAGGAAGACGAAGACTCATTAAACGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
3UTR CAA 72 bp ACAGAGTGGCACAGTCACAAAACCGGAAATGCATCTTaGGTTCAATCCTGGAGGGGAAGGTGCAGATTACAG +
Preference number: 4 (lower is better)
Translates to: TEWHSHKTGNAS*VQSWRGRCRLQ
Trigger: CTGTAATCTGCACCTTCCCCTCCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR TCA 90 bp TGCTTAAAGAGTTCTATTTTCAGTGTCAAGTCCTGGGAGCTGAACGGAAGCCATTTGTCCACCATCTTCTaGTACAGAGCCCTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: CLKSSIFSVKSWELNGSHLSTIF*YRALRL
Trigger: CAGCCTGAGGGCTCTGTATCAGAAGATGGTGGACAA...ATGGCTTCCGTTCAGCTCCCAGGACTTGACACTGAAAATAGAACTCTTTAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR GCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAGGGCTCCCCAGAGGCTaGAGGAGGCCATTACTGGGA +
Preference number: 4 (lower is better)
Translates to: KERSLWTSSFNPQQISTQGLPRG*RRPLLG
Trigger: TCCCAGTAATGGCCTCCTGCAGCCTCTGGGGAGCCC...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp GACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAAAAGAAAAGGTCAGGGGTCAGCATCTGTCCGATaGCCATCATGGGGAACCGTC +
Preference number: 4 (lower is better)
Translates to: DKFVQSSANFNPKRKGQGSASVR*PSWGTV
Trigger: GACGGTTCCCCATGATGGGCATCGGACAGATGCTGA...CCCCTGACCTTTTCTTTTTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp GACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAAAAGAAAAGGTCAGGGGAGGCCTTCCTGTCTTTaGGCAGGGCTTTGGTACTCT +
Preference number: 4 (lower is better)
Translates to: DKFVQSSANFNPKRKGQGRPSCL*AGLWYS
Trigger: AGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCT...CCCCTGACCTTTTCTTTTTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAGGGAACGGGAGGCGGTaGACACACACCCTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: KERSLWTSSFNPQQISTQGNGRR*THTLLF
Trigger: AAAGAGGAGGGTGTGTGTTCACCGCCTCCCGTTCCC...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAATACTCTGGAGCTGTGTaGTCAGCGAGGGCGATGGCT +
Preference number: 4 (lower is better)
Translates to: KERSLWTSSFNPQQISTQYSGAV*SARAMA
Trigger: AGCCATCGCCCTCGCTGATCACACAGCTCCAGAGTA...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp GACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAAAAGAAAAGGTCAGGGGGCTCCTTGGTGGCTCTaGACTTCTCTATCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: DKFVQSSANFNPKRKGQGAPWWL*TSLSGR
Trigger: TCTACCAGATAGAGAAGTGCAGAGCCACCAAGGAGC...CCCCTGACCTTTTCTTTTTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAACAGGACACAGCTCCATaGCCAGGTAGTAGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: KERSLWTSSFNPQQISTQQDTAP*PGSSCS
Trigger: AGAACAGCTACTACCTGGTCATGGAGCTGTGTCCTG...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR TCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAGGCGATGGCTGTTTGTaGGAAGGCAGATTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: KERSLWTSSFNPQQISTQGDGCL*EGRFLS
Trigger: GGACAAGAATCTGCCTTCTCACAAACAGCCATCGCC...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR GCA 90 bp AAAGAAAGATCTCTTTGGACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAGGGTCTTGTAGCAGATaGTATCTTGGATATCTGATT +
Preference number: 4 (lower is better)
Translates to: KERSLWTSSFNPQQISTQGSCSR*YLGYLI
Trigger: AATCAGATATCCAAGATAGCATCTGCTACAAGACCC...TTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTCCAAAGAGATCTTTCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 90 bp CGCGCACCTTGGCGAAGGAGCCCTCTCCCAGCTTCCTGCTGCCGATaGGGTAGTTGCCCACGCGCTTGTGGTGCTGGAAGTCCCGGAGCC +
Preference number: 5 (lower is better)
Translates to: RAPWRRSPLPASCCR*GSCPRACGAGSPGA
Trigger: GGCTCCGGGACTTCCAGCACCACAAGCGCGTGGGCAACTACCTCATCGGCAGCAGGAAGCTGGGAGAGGGCTCCTTCGCCAAGGTGCGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS GCA 90 bp TGCAGAGGGGACATGCTGGCGTCCAGGGACCTCTCTGAGGAAGGCTaGAGGCTCTGGTGCCGCTTCCTCAGCATCTGTCCGATGCCCATC +
Preference number: 5 (lower is better)
Translates to: CRGDMLASRDLSEEG*RLWCRFLSICPMPI
Trigger: GATGGGCATCGGACAGATGCTGAGGAAGCGGCACCAGAGCCTGCAGCCTTCCTCAGAGAGGTCCCTGGACGCCAGCATGTCCCCTCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 90 bp CTCTGTGAACCACCCCCGCACGGTGCAGGTGTTCCACCGCAGAGATaGGTTGCCGGATGTATCTGCGGGCCTCGGCTTCATCCAACCGTT +
Preference number: 5 (lower is better)
Translates to: LCEPPPHGAGVPPQR*VAGCICGPRLHPTV
Trigger: AACGGTTGGATGAAGCCGAGGCCCGCAGATACATCCGGCAACTCATCTCTGCGGTGGAACACCTGCACCGTGCGGGGGTGGTTCACAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTGCGATTCGCCAGCGCTaGCTGGATATTCGGCCTCTT +
Preference number: 5 (lower is better)
Translates to: SLRQAGHCGPPVATQASLAIRQR*LDIRPL
Trigger: AAGAGGCCGAATATCCAGCAAGCGCTGGCGAATCGC...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTTCGGGGAAGCCTGACTaGGAGGCCTTCCTGTCTTTG +
Preference number: 5 (lower is better)
Translates to: SLRQAGHCGPPVATQASLSGKPD*EAFLSL
Trigger: CAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGA...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp AGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAATGTGGCAGGCGCGGTaGGAGAGCACCGTGTTGATG +
Preference number: 5 (lower is better)
Translates to: RLLSLRQAGHCGPPVATQMWQAR*ESTVLM
Trigger: CATCAACACGGTGCTCTCCAACCGCGCCTGCCACAT...TTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp CCACTGACGGTCAGTTACAGAACTGTGAGAGACACACAGAGCGGAGGGGAGGGAATGTGGCAGGCGCGGTaGGAGAGCACCGTGTTGATG +
Preference number: 5 (lower is better)
Translates to: PLTVSYRTVRDTQSGGEGMWQAR*ESTVLM
Trigger: CATCAACACGGTGCTCTCCAACCGCGCCTGCCACAT...TCCCTCCCCTCCGCTCTGTGTGTCTCTCACAGTTCTGTAACTGACCGTCAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp TCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGCCAGCCTTTCTTTGAGCAGGGCTTaGGTACTCTGGAGCTGTGTG +
Preference number: 5 (lower is better)
Translates to: SLRQAGHCGPPVATQASLSLSRA*VLWSCV
Trigger: CACACAGCTCCAGAGTACCAAAGCCCTGCTCAAAGA...AAGGCTGGCTTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 90 bp GTGGGCAAAAGAGACCAGCGTGGAATGCAGTGGAGTTTGGAGAGGTaGGGTACTTCCGGACAGCAGCCCCTGGGAGAGTGTCCTCTCACT +
Preference number: 5 (lower is better)
Translates to: VGKRDQRGMQWSLER*GTSGQQPLGECPLT
Trigger: AGTGAGAGGACACTCTCCCAGGGGCTGCTGTCCGGAAGTACCTCACCTCTCCAAACTCCACTGCATTCCACGCTGGTCTCTTTTGCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 90 bp TTCTTATCGATGACCTTGATAGCTACCTTTTCTCCCGTCAGCACGTaGAGCCCCTCGCGCACCTTGGCGAAGGAGCCCTCTCCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: FLSMTLIATFSPVST*SPSRTLAKEPSPSF
Trigger: GAAGCTGGGAGAGGGCTCCTTCGCCAAGGTGCGCGAGGGGCTGCACGTGCTGACGGGAGAAAAGGTAGCTATCAAGGTCATCGATAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS CCA 90 bp AGGGGCTCTTCCTTGGGGAGGATGCTGGCACTTCCCGGCCCTGGTTaGTGTGGCTCTAGTTTCTTTACAATCCTTGGTGTCCTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: RGSSLGRMLALPGPG*CGSSFFTILGVLGG
Trigger: ACCTCCCAGGACACCAAGGATTGTAAAGAAACTAGAGCCACACCAACCAGGGCCGGGAAGTGCCAGCATCCTCCCCAAGGAAGAGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp CACACAGAGTGGCACAGTCACAAAACCGGAAATGCATCTTTGGTTCAATCCTGGAGCCCCTCGCGCACCTaGGCGAAGGAGCCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: HTEWHSHKTGNASLVQSWSPSRT*AKEPSP
Trigger: GGGAGAGGGCTCCTTCGCCAAGGTGCGCGAGGGGCT...CCAGGATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CAA 90 bp GCGGGCACAGTACACAGGTACACATCCTACCAGCTTTGCAGAGCCAGATGCCTGGCGATTCGCCAGCGCTaGCTGGATATTCGGCCTCTT +
Preference number: 5 (lower is better)
Translates to: AGTVHRYTSYQLCRARCLAIRQR*LDIRPL
Trigger: AAGAGGCCGAATATCCAGCAAGCGCTGGCGAATCGC...CAGGCATCTGGCTCTGCAAAGCTGGTAGGATGTGTACCTGTGTACTGTGCCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CAA 90 bp TGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATCTCTTTGAGCAGGGCTTaGGTACTCTGGAGCTGTGTG +
Preference number: 5 (lower is better)
Translates to: CLPVWSPVPWLSSQRPRISLSRA*VLWSCV
Trigger: CACACAGCTCCAGAGTACCAAAGCCCTGCTCAAAGA...GATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 90 bp AGTCCCTCGTCCAGGTATCCAGGGAGGCCTCATAGGGCTCCTTGGTaGCTCTGCACTTCTCTATCTGGTAGAGCTGGGTCTTGTAGCAGA +
Preference number: 5 (lower is better)
Translates to: SPSSRYPGRPHRAPW*LCTSLSGRAGSCSR
Trigger: TCTGCTACAAGACCCAGCTCTACCAGATAGAGAAGTGCAGAGCCACCAAGGAGCCCTATGAGGCCTCCCTGGATACCTGGACGAGGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 90 bp CAAAGTCCCTCGTCCAGGTATCCAGGGAGGCCTCATAGGGCTCCTTaGTGGCTCTGCACTTCTCTATCTGGTAGAGCTGGGTCTTGTAGC +
Preference number: 5 (lower is better)
Translates to: QSPSSRYPGRPHRAP*WLCTSLSGRAGSCS
Trigger: GCTACAAGACCCAGCTCTACCAGATAGAGAAGTGCAGAGCCACCAAGGAGCCCTATGAGGCCTCCCTGGATACCTGGACGAGGGACTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 90 bp TGCAGTGGAGTTTGGAGAGGTGAGGTACTTCCGGACAGCAGCCCCTaGGAGAGTGTCCTCTCACTAGAATTCCTACGAGCCAGGCTCACA +
Preference number: 5 (lower is better)
Translates to: CSGVWRGEVLPDSSP*ESVLSLEFLRARLT
Trigger: TGTGAGCCTGGCTCGTAGGAATTCTAGTGAGAGGACACTCTCCCAGGGGCTGCTGTCCGGAAGTACCTCACCTCTCCAAACTCCACTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp ACAGAGCGGAGGGGAGGGACAACCTGGTACCAGTCTGGAAATCTGATTGGCCCAATCTTGTGCATGAGGTaGCCACCAGGACACAGCTCC +
Preference number: 5 (lower is better)
Translates to: TERRGGTTWYQSGNLIGPILCMR*PPGHSS
Trigger: GGAGCTGTGTCCTGGTGGCAACCTCATGCACAAGAT...TGGGCCAATCAGATTTCCAGACTGGTACCAGGTTGTCCCTCCCCTCCGCTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp CTCTCTGCTGGGTTCCATCTCTGTCTGAGGCGCCATCCCATCTTCCTCCCGGTCGTTTCTTTACAATCCTaGGTGTCCTGGGAGGTGGGA +
Preference number: 5 (lower is better)
Translates to: LSAGFHLCLRRHPIFLPVVSLQS*VSWEVG
Trigger: TCCCACCTCCCAGGACACCAAGGATTGTAAAGAAAC...GACCGGGAGGAAGATGGGATGGCGCCTCAGACAGAGATGGAACCCAGCAGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 90 bp CCAGGTAGTAGCTGTTCTCTGTCTCCAAGATGTCCAGGAGCTGTGTaGTGTTGGGGTGTCGGATCATCTGCTGGATCTGCCCCTCTCGAC +
Preference number: 5 (lower is better)
Translates to: PGSSCSLSPRCPGAV*CWGVGSSAGSAPLD
Trigger: GTCGAGAGGGGCAGATCCAGCAGATGATCCGACACCCCAACATCACACAGCTCCTGGACATCTTGGAGACAGAGAACAGCTACTACCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 90 bp AAAGTTGACGGCCCCTGTGGAGAGCTGGGTCGGCAGGGGATTCATTaGTTTGTCCACCATCTTCTGATACAGAGCCCTCAGGCTGAAAGG +
Preference number: 5 (lower is better)
Translates to: KVDGPCGELGRQGIH*FVHHLLIQSPQAER
Trigger: CCTTTCAGCCTGAGGGCTCTGTATCAGAAGATGGTGGACAAAGCAATGAATCCCCTGCCGACCCAGCTCTCCACAGGGGCCGTCAACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp GTGCCTGCCTGTGTGGAGCCCTGTTCCGTGGCTGTCCTCACAGAGACCCAGAATTTGGAGAGCACCGTGTaGATGACGTCACTGTTCTTA +
Preference number: 5 (lower is better)
Translates to: VPACVEPCSVAVLTETQNLESTV*MTSLFL
Trigger: TAAGAACAGTGACGTCATCAACACGGTGCTCTCCAA...ATTCTGGGTCTCTGTGAGGACAGCCACGGAACAGGGCTCCACACAGGCAGGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 90 bp GAGAGCTGGGTCGGCAGGGGATTCATTGCTTTGTCCACCATCTTCTaGTACAGAGCCCTCAGGCTGAAAGGCTCCACAGTGAAAGGTAGG +
Preference number: 5 (lower is better)
Translates to: ESWVGRGFIALSTIF*YRALRLKGSTVKGR
Trigger: CCTACCTTTCACTGTGGAGCCTTTCAGCCTGAGGGCTCTGTATCAGAAGATGGTGGACAAAGCAATGAATCCCCTGCCGACCCAGCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 90 bp TCGTCCAGGTATCCAGGGAGGCCTCATAGGGCTCCTTGGTGGCTCTaGACTTCTCTATCTGGTAGAGCTGGGTCTTGTAGCAGATGCTAT +
Preference number: 5 (lower is better)
Translates to: SSRYPGRPHRAPWWL*TSLSGRAGSCSRCY
Trigger: ATAGCATCTGCTACAAGACCCAGCTCTACCAGATAGAGAAGTGCAGAGCCACCAAGGAGCCCTATGAGGCCTCCCTGGATACCTGGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp AGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAATTGGAGAGCACCGTGTaGATGACGTCACTGTTCTTA +
Preference number: 5 (lower is better)
Translates to: RLLSLRQAGHCGPPVATQLESTV*MTSLFL
Trigger: TAAGAACAGTGACGTCATCAACACGGTGCTCTCCAA...TTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 90 bp TCGGAAAAGATTGCGGCAGACGAAGGAATCTTTGTCGGGGAAGCCTaGCTTGGAGGCCTTCCTGTCTTTGAGCAGGGCTTTGGTACTCTG +
Preference number: 5 (lower is better)
Translates to: SEKIAADEGIFVGEA*LGGLPVFEQGFGTL
Trigger: CAGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAAAGATTCCTTCGTCTGCCGCAATCTTTTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACAGGAGCTGTGTGATGTaGGGGTGTCGGATCATCTGC +
Preference number: 5 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHRSCVM*GCRIIC
Trigger: GCAGATGATCCGACACCCCAACATCACACAGCTCCT...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp AGGCTACTATCCCTTAGGCAGGCAGGCCACTGTGGTCCTCCTGTTGCCACCCAAGAAGAAGCCACACAATaGGAATCAGAGGTTTTTCGG +
Preference number: 5 (lower is better)
Translates to: RLLSLRQAGHCGPPVATQEEATQ*ESEVFR
Trigger: CCGAAAAACCTCTGATTCCAATTGTGTGGCTTCTTC...TTGGGTGGCAACAGGAGGACCACAGTGGCCTGCCTGCCTAAGGGATAGTAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp AGGACTAGAGCAGCTTTCTTCCAGGGTCAGCCAAATCCGTGTTCTCTTCTAGTTTCGGGGAAGCCTGACTaGGAGGCCTTCCTGTCTTTG +
Preference number: 5 (lower is better)
Translates to: RTRAAFFQGQPNPCSLLVSGKPD*EAFLSL
Trigger: CAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGA...AACTAGAAGAGAACACGGATTTGGCTGACCCTGGAAGAAAGCTGCTCTAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS CCA 90 bp GAGCAGGGCTTTGGTACTCTGGAGCTGTGTGATCAGCGAGGGCGATaGCTGTTTGTGAGAAGGCAGATTCTTGTCCAACTTCTTGGAAAA +
Preference number: 5 (lower is better)
Translates to: EQGFGTLELCDQRGR*LFVRRQILVQLLGK
Trigger: TTTTCCAAGAAGTTGGACAAGAATCTGCCTTCTCACAAACAGCCATCGCCCTCGCTGATCACACAGCTCCAGAGTACCAAAGCCCTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 90 bp CCACGCTGGGACTCAGGTCTTCCAAAGAAATCCTGTTGGGATAGGTaGCATTGCAGGGCACCTTTCCAGTGTAATTCTCATTCAACCAGC +
Preference number: 5 (lower is better)
Translates to: PRWDSGLPKKSCWDR*HCRAPFQCNSHSTS
Trigger: GCTGGTTGAATGAGAATTACACTGGAAAGGTGCCCTGCAATGTCACCTATCCCAACAGGATTTCTTTGGAAGACCTGAGTCCCAGCGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp GAGACACACAGAGTGGCACAGTCACAAAACCGGAAATGCATCTTTGGTTCAATCATCTTGTGCATGAGGTaGCCACCAGGACACAGCTCC +
Preference number: 5 (lower is better)
Translates to: ETHRVAQSQNRKCIFGSIILCMR*PPGHSS
Trigger: GGAGCTGTGTCCTGGTGGCAACCTCATGCACAAGAT...GATTGAACCAAAGATGCATTTCCGGTTTTGTGACTGTGCCACTCTGTGTGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CAA 90 bp GACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAAAAGAAAAGGTCAGGGGCACCGCAGAGATGAGTaGCCGGATGTATCTGCGGGC +
Preference number: 5 (lower is better)
Translates to: DKFVQSSANFNPKRKGQGHRRDE*PDVSAG
Trigger: GCCCGCAGATACATCCGGCAACTCATCTCTGCGGTG...CCCCTGACCTTTTCTTTTTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp CCGTCAAAGCTCAAACACGTCACATCAAATACGGAGAGCGTCTGTGGATGGCTCTTCTTGTCCAACTTCTaGGAAAACGGACGGTGGAGA +
Preference number: 5 (lower is better)
Translates to: PSKLKHVTSNTESVCGWLFLSNF*ENGRWR
Trigger: TCTCCACCGTCCGTTTTCCAAGAAGTTGGACAAGAA...GAGCCATCCACAGACGCTCTCCGTATTTGATGTGACGTGTTTGAGCTTTGACGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CAA 90 bp AAAGACTCATTCATGAAGGACAGACAGTCATGGGTCAAACAGACAATACACTCTCACCGCAGAGATGAGTaGCCGGATGTATCTGCGGGC +
Preference number: 5 (lower is better)
Translates to: KDSFMKDRQSWVKQTIHSHRRDE*PDVSAG
Trigger: GCCCGCAGATACATCCGGCAACTCATCTCTGCGGTG...AGAGTGTATTGTCTGTTTGACCCATGACTGTCTGTCCTTCATGAATGAGTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS-3UTR CAA 90 bp CCAAGCCAGCCTTTCGGCCATCTGAGCTGCAGCCTCTCAGAAAAACAAAAACACGAAGAAGCCACACAATaGGAATCAGAGGTTTTTCGG +
Preference number: 5 (lower is better)
Translates to: PSQPFGHLSCSLSEKQKHEEATQ*ESEVFR
Trigger: CCGAAAAACCTCTGATTCCAATTGTGTGGCTTCTTC...GTGTTTTTGTTTTTCTGAGAGGCTGCAGCTCAGATGGCCGAAAGGCTGGCTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp AAAGACTCATTCATGAAGGACAGACAGTCATGGGTCAAACAGACAATACACTCTAGGAGCTGTGTGATGTaGGGGTGTCGGATCATCTGC +
Preference number: 5 (lower is better)
Translates to: KDSFMKDRQSWVKQTIHSRSCVM*GCRIIC
Trigger: GCAGATGATCCGACACCCCAACATCACACAGCTCCT...AGAGTGTATTGTCTGTTTGACCCATGACTGTCTGTCCTTCATGAATGAGTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS GCA 90 bp TGGCTCTGCACTTCTCTATCTGGTAGAGCTGGGTCTTGTAGCAGATaGTATCTTGGATATCTGATTTCCCTGACAAATAGCGCTCAAGTT +
Preference number: 5 (lower is better)
Translates to: WLCTSLSGRAGSCSR*YLGYLISLTNSAQV
Trigger: AACTTGAGCGCTATTTGTCAGGGAAATCAGATATCCAAGATAGCATCTGCTACAAGACCCAGCTCTACCAGATAGAGAAGTGCAGAGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp GACAAGTTCGTTCAATCCTCAGCAAATTTCAACCCAAAAAGAAAAGGTCAGGGGTTCTTGTCCAACTTCTaGGAAAACGGACGGTGGAGA +
Preference number: 5 (lower is better)
Translates to: DKFVQSSANFNPKRKGQGFLSNF*ENGRWR
Trigger: TCTCCACCGTCCGTTTTCCAAGAAGTTGGACAAGAA...CCCCTGACCTTTTCTTTTTGGGTTGAAATTTGCTGAGGATTGAACGAACTTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS-3UTR CAA 90 bp AAAGACTCATTCATGAAGGACAGACAGTCATGGGTCAAACAGACAATACACTCTGTTTCTTTACAATCCTaGGTGTCCTGGGAGGTGGGA +
Preference number: 5 (lower is better)
Translates to: KDSFMKDRQSWVKQTIHSVSLQS*VSWEVG
Trigger: TCCCACCTCCCAGGACACCAAGGATTGTAAAGAAAC...AGAGTGTATTGTCTGTTTGACCCATGACTGTCTGTCCTTCATGAATGAGTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS CCA 72 bp TTTCTCCCGTCAGCACGTGCAGCCCCTCGCGCACCTTaGCGAAGGAGCCCTCTCCCAGCTTCCTGCTGCCGA +
Preference number: 6 (lower is better)
Translates to: FLPSARAAPRAP*RRSPLPASCCR
Trigger: TCGGCAGCAGGAAGCTGGGAGAGGGCTCCTTCGCCAAGGTGCGCGAGGGGCTGCACGTGCTGACGGGAGAAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS CAA 72 bp TTTTCTCCCGTCAGCACGTGCAGCCCCTCGCGCACCTaGGCGAAGGAGCCCTCTCCCAGCTTCCTGCTGCCG +
Preference number: 6 (lower is better)
Translates to: FSPVSTCSPSRT*AKEPSPSFLLP
Trigger: CGGCAGCAGGAAGCTGGGAGAGGGCTCCTTCGCCAAGGTGCGCGAGGGGCTGCACGTGCTGACGGGAGAAAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS TCA 72 bp CCACCCCCGCACGGTGCAGGTGTTCCACCGCAGAGATaGGTTGCCGGATGTATCTGCGGGCCTCGGCTTCAT +
Preference number: 6 (lower is better)
Translates to: PPPHGAGVPPQR*VAGCICGPRLH
Trigger: ATGAAGCCGAGGCCCGCAGATACATCCGGCAACTCATCTCTGCGGTGGAACACCTGCACCGTGCGGGGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp TTCACAGGGTCTGGTTCCAGGAGGGAGCGCAGAAAGTaGACGGCCCCTGTGGAGAGCTGGGTCGGCAGGGGA +
Preference number: 6 (lower is better)
Translates to: FTGSGSRRERRK*TAPVESWVGRG
Trigger: TCCCCTGCCGACCCAGCTCTCCACAGGGGCCGTCAACTTTCTGCGCTCCCTCCTGGAACCAGACCCTGTGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 72 bp TGGCGAAGGAGCCCTCTCCCAGCTTCCTGCTGCCGATaGGGTAGTTGCCCACGCGCTTGTGGTGCTGGAAGT +
Preference number: 6 (lower is better)
Translates to: WRRSPLPASCCR*GSCPRACGAGS
Trigger: ACTTCCAGCACCACAAGCGCGTGGGCAACTACCTCATCGGCAGCAGGAAGCTGGGAGAGGGCTCCTTCGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS GCA 72 bp CCCGCACGGTGCAGGTGTTCCACCGCAGAGATGAGTTaGCGGATGTATCTGCGGGCCTCGGCTTCATCCAAC +
Preference number: 6 (lower is better)
Translates to: PARCRCSTAEMS*RMYLRASASSN
Trigger: GTTGGATGAAGCCGAGGCCCGCAGATACATCCGGCAACTCATCTCTGCGGTGGAACACCTGCACCGTGCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 72 bp CCATATCCAGCAGCAGGGGCTCTTCCTTGGGGAGGATaGTGGCACTTCCCGGCCCTGGTTGGTGTGGCTCTA +
Preference number: 6 (lower is better)
Translates to: PYPAAGALPWGG*WHFPALVGVAL
Trigger: TAGAGCCACACCAACCAGGGCCGGGAAGTGCCAGCATCCTCCCCAAGGAAGAGCCCCTGCTGCTGGATATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 72 bp GCAGGCTCTGGTGCCGCTTCCTCAGCATCTGTCCGATaGCCATCATGGGGAACCGTCCCCTGCTCTTCACAC +
Preference number: 6 (lower is better)
Translates to: AGSGAASSASVR*PSWGTVPCSSH
Trigger: GTGTGAAGAGCAGGGGACGGTTCCCCATGATGGGCATCGGACAGATGCTGAGGAAGCGGCACCAGAGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 72 bp AGGAGCGTACCATATCCAGCAGCAGGGGCTCTTCCTTaGGGAGGATGCTGGCACTTCCCGGCCCTGGTTGGT +
Preference number: 6 (lower is better)
Translates to: RSVPYPAAGALP*GGCWHFPALVG
Trigger: ACCAACCAGGGCCGGGAAGTGCCAGCATCCTCCCCAAGGAAGAGCCCCTGCTGCTGGATATGGTACGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 72 bp GGTGCCGCTTCCTCAGCATCTGTCCGATGCCCATCATaGGGAACCGTCCCCTGCTCTTCACACAGTTGGGGC +
Preference number: 6 (lower is better)
Translates to: GAASSASVRCPS*GTVPCSSHSWG
Trigger: GCCCCAACTGTGTGAAGAGCAGGGGACGGTTCCCCATGATGGGCATCGGACAGATGCTGAGGAAGCGGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp CCCCGCACGGTGCAGGTGTTCCACCGCAGAGATGAGTaGCCGGATGTATCTGCGGGCCTCGGCTTCATCCAA +
Preference number: 6 (lower is better)
Translates to: PRTVQVFHRRDE*PDVSAGLGFIQ
Trigger: TTGGATGAAGCCGAGGCCCGCAGATACATCCGGCAACTCATCTCTGCGGTGGAACACCTGCACCGTGCGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 90 bp GTGAACCACCCCCGCACGGTGCAGGTGTTCCACCGCAGAGATGAGTaGCCGGATGTATCTGCGGGCCTCGGCTTCATCCAACCGTTTCTT +
Preference number: 6 (lower is better)
Translates to: VNHPRTVQVFHRRDE*PDVSAGLGFIQPFL
Trigger: AAGAAACGGTTGGATGAAGCCGAGGCCCGCAGATACATCCGGCAACTCATCTCTGCGGTGGAACACCTGCACCGTGCGGGGGTGGTTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 72 bp ATGACCTTGATAGCTACCTTTTCTCCCGTCAGCACGTaGAGCCCCTCGCGCACCTTGGCGAAGGAGCCCTCT +
Preference number: 6 (lower is better)
Translates to: MTLIATFSPVST*SPSRTLAKEPS
Trigger: AGAGGGCTCCTTCGCCAAGGTGCGCGAGGGGCTGCACGTGCTGACGGGAGAAAAGGTAGCTATCAAGGTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065856.8
CDS CAA 90 bp TCGGGGAAGCCTGACTTGGAGGCCTTCCTGTCTTTGAGCAGGGCTTaGGTACTCTGGAGCTGTGTGATCAGCGAGGGCGATGGCTGTTTG +
Preference number: 6 (lower is better)
Translates to: SGKPDLEAFLSLSRA*VLWSCVISEGDGCL
Trigger: CAAACAGCCATCGCCCTCGCTGATCACACAGCTCCAGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 72 bp GGCCCCTGTGGAGAGCTGGGTCGGCAGGGGATTCATTaGTTTGTCCACCATCTTCTGATACAGAGCCCTCAG +
Preference number: 6 (lower is better)
Translates to: GPCGELGRQGIH*FVHHLLIQSPQ
Trigger: CTGAGGGCTCTGTATCAGAAGATGGTGGACAAAGCAATGAATCCCCTGCCGACCCAGCTCTCCACAGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 72 bp TGGGCAAAAGAGACCAGCGTGGAATGCAGTGGAGTTTaGAGAGGTGAGGTACTTCCGGACAGCAGCCCCTGG +
Preference number: 6 (lower is better)
Translates to: WAKETSVECSGV*RGEVLPDSSPW
Trigger: CCAGGGGCTGCTGTCCGGAAGTACCTCACCTCTCCAAACTCCACTGCATTCCACGCTGGTCTCTTTTGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp CGGCCCCTGTGGAGAGCTGGGTCGGCAGGGGATTCATaGCTTTGTCCACCATCTTCTGATACAGAGCCCTCA +
Preference number: 6 (lower is better)
Translates to: RPLWRAGSAGDS*LCPPSSDTEPS
Trigger: TGAGGGCTCTGTATCAGAAGATGGTGGACAAAGCAATGAATCCCCTGCCGACCCAGCTCTCCACAGGGGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp CCTGACTTGGAGGCCTTCCTGTCTTTGAGCAGGGCTTaGGTACTCTGGAGCTGTGTGATCAGCGAGGGCGAT +
Preference number: 6 (lower is better)
Translates to: PDLEAFLSLSRA*VLWSCVISEGD
Trigger: ATCGCCCTCGCTGATCACACAGCTCCAGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 90 bp AAGGAATCTTTGTCGGGGAAGCCTGACTTGGAGGCCTTCCTGTCTTaGAGCAGGGCTTTGGTACTCTGGAGCTGTGTGATCAGCGAGGGC +
Preference number: 6 (lower is better)
Translates to: KESLSGKPDLEAFLS*SRALVLWSCVISEG
Trigger: GCCCTCGCTGATCACACAGCTCCAGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAAAGATTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS GCA 72 bp TATCCAGGGAGGCCTCATAGGGCTCCTTGGTGGCTCTaGACTTCTCTATCTGGTAGAGCTGGGTCTTGTAGC +
Preference number: 6 (lower is better)
Translates to: YPGRPHRAPWWL*TSLSGRAGSCS
Trigger: GCTACAAGACCCAGCTCTACCAGATAGAGAAGTGCAGAGCCACCAAGGAGCCCTATGAGGCCTCCCTGGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp TTGTCGGGGAAGCCTGACTTGGAGGCCTTCCTGTCTTaGAGCAGGGCTTTGGTACTCTGGAGCTGTGTGATC +
Preference number: 6 (lower is better)
Translates to: LSGKPDLEAFLS*SRALVLWSCVI
Trigger: GATCACACAGCTCCAGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp CGGCAGACGAAGGAATCTTTGTCGGGGAAGCCTGACTaGGAGGCCTTCCTGTCTTTGAGCAGGGCTTTGGTA +
Preference number: 6 (lower is better)
Translates to: RQTKESLSGKPD*EAFLSLSRALV
Trigger: TACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAAAGATTCCTTCGTCTGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 72 bp AGCTGTTCTCTGTCTCCAAGATGTCCAGGAGCTGTGTaGTGTTGGGGTGTCGGATCATCTGCTGGATCTGCC +
Preference number: 6 (lower is better)
Translates to: SCSLSPRCPGAV*CWGVGSSAGSA
Trigger: GGCAGATCCAGCAGATGATCCGACACCCCAACATCACACAGCTCCTGGACATCTTGGAGACAGAGAACAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 72 bp GTCGGCAGGGGATTCATTGCTTTGTCCACCATCTTCTaGTACAGAGCCCTCAGGCTGAAAGGCTCCACAGTG +
Preference number: 6 (lower is better)
Translates to: VGRGFIALSTIF*YRALRLKGSTV
Trigger: CACTGTGGAGCCTTTCAGCCTGAGGGCTCTGTATCAGAAGATGGTGGACAAAGCAATGAATCCCCTGCCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS TCA 72 bp ATTGCGGCAGACGAAGGAATCTTTGTCGGGGAAGCCTaGCTTGGAGGCCTTCCTGTCTTTGAGCAGGGCTTT +
Preference number: 6 (lower is better)
Translates to: IAADEGIFVGEA*LGGLPVFEQGF
Trigger: AAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAAAGATTCCTTCGTCTGCCGCAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 72 bp AATAGCGCTCAAGTTTCTTGTTCAACAGGAAGTAGATaGCCAGGATGTGGCAGGCGCGGTTGGAGAGCACCG +
Preference number: 6 (lower is better)
Translates to: NSAQVSCSTGSR*PGCGRRGWRAP
Trigger: CGGTGCTCTCCAACCGCGCCTGCCACATCCTGGCCATCTACTTCCTGTTGAACAAGAAACTTGAGCGCTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp TTCTCTGTCTCCAAGATGTCCAGGAGCTGTGTGATGTaGGGGTGTCGGATCATCTGCTGGATCTGCCCCTCT +
Preference number: 6 (lower is better)
Translates to: FSVSKMSRSCVM*GCRIICWICPS
Trigger: AGAGGGGCAGATCCAGCAGATGATCCGACACCCCAACATCACACAGCTCCTGGACATCTTGGAGACAGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 90 bp AAAAGATTGCGGCAGACGAAGGAATCTTTGTCGGGGAAGCCTGACTaGGAGGCCTTCCTGTCTTTGAGCAGGGCTTTGGTACTCTGGAGC +
Preference number: 6 (lower is better)
Translates to: KRLRQTKESLSGKPD*EAFLSLSRALVLWS
Trigger: GCTCCAGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCAGGCTTCCCCGACAAAGATTCCTTCGTCTGCCGCAATCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 72 bp GGCTGTTCTTTTCTTCGTGGGCAAAAGAGACCAGCGTaGAATGCAGTGGAGTTTGGAGAGGTGAGGTACTTC +
Preference number: 6 (lower is better)
Translates to: GCSFLRGQKRPA*NAVEFGEVRYF
Trigger: GAAGTACCTCACCTCTCCAAACTCCACTGCATTCCACGCTGGTCTCTTTTGCCCACGAAGAAAAGAACAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 72 bp AGTGTAATTCTCATTCAACCAGCGATTCGCCAGCGCTaGCTGGATATTCGGCCTCTTCACAGGGTCTGGTTC +
Preference number: 6 (lower is better)
Translates to: SVILIQPAIRQR*LDIRPLHRVWF
Trigger: GAACCAGACCCTGTGAAGAGGCCGAATATCCAGCAAGCGCTGGCGAATCGCTGGTTGAATGAGAATTACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 72 bp TATAGCCCAGCTTTTCAGTCATGTGCAGCACCACGCTaGGACTCAGGTCTTCCAAAGAAATCCTGTTGGGAT +
Preference number: 6 (lower is better)
Translates to: YSPAFQSCAAPR*DSGLPKKSCWD
Trigger: ATCCCAACAGGATTTCTTTGGAAGACCTGAGTCCCAGCGTGGTGCTGCACATGACTGAAAAGCTGGGCTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CCA 72 bp TTTGGTACTCTGGAGCTGTGTGATCAGCGAGGGCGATaGCTGTTTGTGAGAAGGCAGATTCTTGTCCAACTT +
Preference number: 6 (lower is better)
Translates to: FGTLELCDQRGR*LFVRRQILVQL
Trigger: AAGTTGGACAAGAATCTGCCTTCTCACAAACAGCCATCGCCCTCGCTGATCACACAGCTCCAGAGTACCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2
CDS CAA 90 bp GGAGGTGGGACAGGGATGAATTCCATGGAAGAAGAAGCCACACAATaGGAATCAGAGGTTTTTCGGAAAAGATTGCGGCAGACGAAGGAA +
Preference number: 6 (lower is better)
Translates to: GGGTGMNSMEEEATQ*ESEVFRKRLRQTKE
Trigger: TTCCTTCGTCTGCCGCAATCTTTTCCGAAAAACCTCTGATTCCAATTGTGTGGCTTCTTCTTCCATGGAATTCATCCCTGTCCCACCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065856.8
ENSMUST00000231719.2