Pregenerated sensors for HTR6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028747Ensembl transcript IDs: ENSMUST00000068036.2, ENSMUST00000105802.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCATTAGGGAGAATGGGCTaGGGCCTCTGGGAATGTGGC | + |
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Preference number: 2 (lower is better) Translates to: AEDPSGHSACSRETYHLPLGRMG*GLWECG Trigger: GCCACATTCCCAGAGGCCTCAGCCCATTCTCCCTAA...TGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| 3UTR TCA 72 bp | GAGACCTACCACCTCCCACTCTTAGGGAGAATGGGCTaGGGCCTCTGGGAATGTGGCCTCCGCTGGCCAGCT | + |
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Preference number: 3 (lower is better) Translates to: ETYHLPLLGRMG*GLWECGLRWPA Trigger: AGCTGGCCAGCGGAGGCCACATTCCCAGAGGCCTCAGCCCATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | TCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATGGGCTGAGGCCTCTGGGATCCAGGCACCCAGGATaGGCGCCAGGGCACGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: SGDLPPPTLRENGLRPLGSRHPG*APGHAG Trigger: CCCCGCGTGCCCTGGCGCTCATCCTGGGTGCCTGGA...TCCCAGAGGCCTCAGCCCATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTGCACCTGCTGCAGGCTaGGGCCTGGCCTGGCACCAC | + |
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Preference number: 4 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTAPAAG*GLAWHH Trigger: GTGGTGCCAGGCCAGGCCTCAGCCTGCAGCAGGTGC...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | GGGGCTAGCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCAAGCTGGGCTGTGAGCTaGAGGCCCGAGGTGCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: GASRGSLRTLGMLSGDLPSWAVS*RPEVPP Trigger: AGGGGGCACCTCGGGCCTGCAGCTCACAGCCCAGCT...TGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGCTAGCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTGCCGTCAGCACGATaGCCACGCACAGCGCAGCGG | + |
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Preference number: 4 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTLPSAR*PRTAQR Trigger: CCGCTGCGCTGTGCGTGGTCATCGTGCTGACGGCAG...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTGCAGCGGCGAGAGGATaGGCAGGTAGCGGTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTAAARG*AGSGPG Trigger: GCCTGGACCGCTACCTGCTCATCCTCTCGCCGCTGC...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | GGGGCTAGCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCATTGCGCAGCGCGGGCTaGGTGCAGATGAGCGCGATC | + |
|
Preference number: 4 (lower is better) Translates to: GASRGSLRTLGMLSGDLPLRSAG*VQMSAI Trigger: GATCGCGCTCATCTGCACGCAGCCCGCGCTGCGCAA...TGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGCTAGCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | GGGGCTAGCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCAGTGAGCGAGGCCACTTaGACCGCCTGCTTGCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GASRGSLRTLGMLSGDLPVSEAT*TACLRA Trigger: TGCCCGCAAGCAGGCGGTGCAAGTGGCCTCGCTCAC...TGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGCTAGCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | TCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATGGGCTGAGGCCTCTGGGAGGCAGGGGCAGCACCTaGTGCAGGCTGAGGCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: SGDLPPPTLRENGLRPLGGRGST*CRLRPG Trigger: GCCAGGCCTCAGCCTGCAGCAGGTGCTGCCCCTGCC...TCCCAGAGGCCTCAGCCCATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | GGGGCTAGCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCAGCTGCAGGCCCGAGGTaGCCCCTGAAGCTGAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GASRGSLRTLGMLSGDLPAAGPR*PLKLSL Trigger: CAGACTCAGCTTCAGGGGGCACCTCGGGCCTGCAGC...TGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGCTAGCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | GGGGCTAGCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCATGTGAGAGGTCCACATaGAGGGGGAGGCGGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GASRGSLRTLGMLSGDLPCERST*RGRRGW Trigger: CCAGCCCCGCCTCCCCCTCCATGTGGACCTCTCACA...TGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGCTAGCCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | GCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCATGCCGAGGGTCAGGCTaGCCTTCAAGGCCTTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: AEDPSGHSACSRETYHLPCRGSG*PSRPSC Trigger: GCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGGCA...TGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | GCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTGCAGGCTGAGGCCTaGCCTGGCACCACTGTGAGA | + |
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Preference number: 4 (lower is better) Translates to: AEDPSGHSACSRETYHLPLQAEA*PGTTVR Trigger: TCTCACAGTGGTGCCAGGCCAGGCCTCAGCCTGCAG...TGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | CTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGCACGCGGGGCTGTCATaGGCAGCTTGTAGCGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: LRTLGMLSGDLPPPTLREHAGLS*AACSAA Trigger: CGCTGCGCTACAAGCTGCGCATGACAGCCCCGCGTG...CTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | GATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAAGGGGCAGCACCTGCTaGAGGCTGAGGCCTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: DPSGHSACSRETYHLPLLRGSTC*RLRPGL Trigger: CAGGCCAGGCCTCAGCCTGCAGCAGGTGCTGCCCCT...TAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | GCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACGATCAGCAGCGAATTaGCGGCTGCCGTCAGCACGA | + |
|
Preference number: 4 (lower is better) Translates to: AEDPSGHSACSRETYHLPRSAAN*RLPSAR Trigger: TCGTGCTGACGGCAGCCGCCAATTCGCTGCTGATCG...TGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | GCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCAACAGCGCGTTCAGCATaGCTGGGGGCATCACCACCA | + |
|
Preference number: 4 (lower is better) Translates to: AEDPSGHSACSRETYHLPTARSA*LGASPP Trigger: TGGTGGTGATGCCCCCAGCCATGCTGAACGCGCTGT...TGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTCCATCCCTGGGCGTaGTGTCCTGGGCACCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTLHPWA*CPGHLQ Trigger: TTGCAGGTGCCCAGGACACCACGCCCAGGGATGGAG...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | GCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACGGCCTGAGCTATGCTaGCCACAAAGAAGGGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: AEDPSGHSACSRETYHLPRPELC*PQRRAA Trigger: GGCTGCCCTTCTTTGTGGCCAGCATAGCTCAGGCCG...TGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCCAGGCAGCAAAAGCTaGGCTGTGAGCTGCAGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTPGSKS*AVSCRP Trigger: GGGCCTGCAGCTCACAGCCCAGCTTTTGCTGCCTGG...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | TCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATGGGCTGAGGCCTCTGGGACTGGGGTGCTACTGTTaGCAGGGCCGGGCTCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SGDLPPPTLRENGLRPLGLGCYC*QGRALE Trigger: TTCCAGAGCCCGGCCCTGTCAACAGTAGCACCCCAG...TCCCAGAGGCCTCAGCCCATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | GAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCGCTTTGCCCAGTTCATaGCAGCCCAGCAAGAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: EDPSGHSACSRETYHLPLALPSS*QPSKRG Trigger: GCCCCTCTTGCTGGGCTGGCATGAACTGGGCAAAGC...GAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | TCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAGCCACTTGCACCGCCTaGTTGCGGGCAGCCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: SGHSACSRETYHLPLLGRATCTA*LRAASK Trigger: CTTGCTGGCTGCCCGCAAGCAGGCGGTGCAAGTGGC...TCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | TCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATGGGCTGAGGCCTCTGGGAGCCAATAGGCGGCACTaGCCCGGGGCAGATGTTCGA | + |
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Preference number: 4 (lower is better) Translates to: SGDLPPPTLRENGLRPLGANRRH*PGADVR Trigger: TCGAACATCTGCCCCGGGCCAGTGCCGCCTATTGGC...TCCCAGAGGCCTCAGCCCATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTGGACATAAGGCAGGCTaGCCAATAGGCGGCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTGHKAG*PIGGTG Trigger: GCCAGTGCCGCCTATTGGCCAGCCTGCCTTATGTCC...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | CTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGACATGCTCAGCAGGATaGCGAGGGTCAGGCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: LRTLGMLSGDLPPPTLRETCSAG*RGSGWP Trigger: AGGCCAGCCTGACCCTCGGCATCCTGCTGAGCATGT...CTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | TCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAAGCAGACTCCATCCCTaGGCGTGGTGTCCTGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SGHSACSRETYHLPLLGRSRLHP*AWCPGH Trigger: GTGCCCAGGACACCACGCCCAGGGATGGAGTCTGCT...TCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | AGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATCGGGCTGCGTGCAGATaGGCGCGATCAGCAGCGAAT | + |
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Preference number: 4 (lower is better) Translates to: RTLGMLSGDLPPPTLRENRAACR*ARSAAN Trigger: ATTCGCTGCTGATCGCGCTCATCTGCACGCAGCCCG...ATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | TCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGACCATCAGGTCCGACGTaGAGAGCGACACCAGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SGHSACSRETYHLPLLGRPSGPT*RATPGR Trigger: TCTTCCTGGTGTCGCTCTTCACGTCGGACCTGATGG...TCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTAGAAGGGCAGCCAGGTaGCAAAGAACATGCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTRRAAR*QRTCSA Trigger: TGCTGAGCATGTTCTTTGTCACCTGGCTGCCCTTCT...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | AGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATCGCGTTCAGCATGGCTaGGGGCATCACCACCAATCC | + |
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Preference number: 4 (lower is better) Translates to: RTLGMLSGDLPPPTLRENRVQHG*GHHHQS Trigger: GGATTGGTGGTGATGCCCCCAGCCATGCTGAACGCG...ATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | TCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAAGATCCTGCAGTAGGTaGAGCAGATGGCACCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: SGHSACSRETYHLPLLGRRSCSR*SRWHPK Trigger: CTTCGGGTGCCATCTGCTTCACCTACTGCAGGATCT...TCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR GCA 90 bp | TCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATGGGCTGAGGCCTCTGGGAATACGGCCTGAGCTATaGTGGCCACAAAGAAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: SGDLPPPTLRENGLRPLGIRPEL*WPQRRA Trigger: TGCCCTTCTTTGTGGCCAGCATAGCTCAGGCCGTAT...TCCCAGAGGCCTCAGCCCATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CCA 90 bp | GGGGCTAGCCGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCAGACATCGAAGAGACCTaGAGAGATGCAGTCACATAC | + |
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Preference number: 4 (lower is better) Translates to: GASRGSLRTLGMLSGDLPDIEET*RDAVTY Trigger: GTATGTGACTGCATCTCTCCAGGTCTCTTCGATGTC...TGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCGGCTAGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR TCA 90 bp | TCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAAGTATCCCAGCCATGTaGGGACATCGAAGAGACCTG | + |
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Preference number: 4 (lower is better) Translates to: SGHSACSRETYHLPLLGRSIPAM*GHRRDL Trigger: CAGGTCTCTTCGATGTCCTCACATGGCTGGGATACT...TCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS GCA 90 bp | CGCGGGCTGCGTGCAGATGAGCGCGATCAGCAGCGAATTGGCGGCTaGCGTCAGCACGATGACCACGCACAGCGCAGCGGCCACCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: RGLRADERDQQRIGG*RQHDDHAQRSGHPA Trigger: GGCTGGGTGGCCGCTGCGCTGTGCGTGGTCATCGTGCTGACGGCAGCCGCCAATTCGCTGCTGATCGCGCTCATCTGCACGCAGCCCGCG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 90 bp | ATCCCTGGGCGTGGTGTCCTGGGCACCTGCAAGGTTTCCAAGGCCTaGCCAGCCGTAGCCGTGCCCGTGGTGAGCGAGGCCACTTGCACC | + |
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Preference number: 5 (lower is better) Translates to: IPGRGVLGTCKVSKA*PAVAVPVVSEATCT Trigger: GGTGCAAGTGGCCTCGCTCACCACGGGCACGGCTACGGCTGGCCAGGCCTTGGAAACCTTGCAGGTGCCCAGGACACCACGCCCAGGGAT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS-3UTR CAA 90 bp | CTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGGGTGAGCGAGGCCACTaGCACCGCCTGCTTGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: LRTLGMLSGDLPPPTLREGERGH*HRLLAG Trigger: GCCCGCAAGCAGGCGGTGCAAGTGGCCTCGCTCACC...CTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CAA 90 bp | CGAGGATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTGCGATCAGCAGCGAATaGGCGGCTGCCGTCAGCACG | + |
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Preference number: 5 (lower is better) Translates to: RGSLRTLGMLSGDLPPPTAISSE*AAAVST Trigger: CGTGCTGACGGCAGCCGCCAATTCGCTGCTGATCGC...AGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATCCTCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS CCA 90 bp | GCTATGCTTGGTGGTCAGACGCCTACTGTCAGCAGACTCCATCCCTaGGCGTGGTGTCCTGGGCACCTGCAAGGTTTCCAAGGCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: AMLGGQTPTVSRLHP*AWCPGHLQGFQGLA Trigger: GGCCAGGCCTTGGAAACCTTGCAGGTGCCCAGGACACCACGCCCAGGGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 90 bp | TGCCGAGGGTCAGGCTGGCCTTCAAGGCCTTCCTGCTATGCTTGGTaGTCAGACGCCTACTGTCAGCAGACTCCATCCCTGGGCGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: CRGSGWPSRPSCYAW*SDAYCQQTPSLGVV Trigger: CACCACGCCCAGGGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 90 bp | GGATGCCGAGGGTCAGGCTGGCCTTCAAGGCCTTCCTGCTATGCTTaGTGGTCAGACGCCTACTGTCAGCAGACTCCATCCCTGGGCGTG | + |
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Preference number: 5 (lower is better) Translates to: GCRGSGWPSRPSCYA*WSDAYCQQTPSLGV Trigger: CACGCCCAGGGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGGCATCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS-3UTR CAA 90 bp | TCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATGGGCTGAGGCCTCTGGGACTGCCCAGGGCCCTCTaGAAGTCCCGCATGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: SGDLPPPTLRENGLRPLGLPRAL*KSRMKR Trigger: CCTCTTCATGCGGGACTTCAAGAGGGCCCTGGGCAG...TCCCAGAGGCCTCAGCCCATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS GCA 90 bp | AGCAGGATGCCGAGGGTCAGGCTGGCCTTCAAGGCCTTCCTGCTATaGTTGGTGGTCAGACGCCTACTGTCAGCAGACTCCATCCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: SRMPRVRLAFKAFLL*LVVRRLLSADSIPG Trigger: CCCAGGGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGGCATCCTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS-3UTR CAA 90 bp | CTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGGAGTCTGAATCTGAGTaGGGTGGCAGAGGCAGGGGC | + |
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Preference number: 5 (lower is better) Translates to: LRTLGMLSGDLPPPTLREESESE*GGRGRG Trigger: GCCCCTGCCTCTGCCACCCAACTCAGATTCAGACTC...CTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS GCA 90 bp | TGCTCAGCAGGATGCCGAGGGTCAGGCTGGCCTTCAAGGCCTTCCTaGTATGCTTGGTGGTCAGACGCCTACTGTCAGCAGACTCCATCC | + |
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Preference number: 5 (lower is better) Translates to: CSAGCRGSGWPSRPS*YAWWSDAYCQQTPS Trigger: GGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGGCATCCTGCTGAGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS TCA 90 bp | CACATACGGCCTGAGCTATGCTGGCCACAAAGAAGGGCAGCCAGGTaGCAAAGAACATGCTCAGCAGGATGCCGAGGGTCAGGCTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: HIRPELCWPQRRAAR*QRTCSAGCRGSGWP Trigger: AGGCCAGCCTGACCCTCGGCATCCTGCTGAGCATGTTCTTTGTCACCTGGCTGCCCTTCTTTGTGGCCAGCATAGCTCAGGCCGTATGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS-3UTR CAA 90 bp | AGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATAAGAAGTTAGACGTGTaGCGCAGCGCGGGCTGCGTG | + |
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Preference number: 5 (lower is better) Translates to: RTLGMLSGDLPPPTLRENKKLDV*RSAGCV Trigger: CACGCAGCCCGCGCTGCGCAACACGTCTAACTTCTT...ATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CAA 90 bp | GATCCCTCAGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGCCTTCCTGCTATGCTaGGTGGTCAGACGCCTACTG | + |
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Preference number: 5 (lower is better) Translates to: DPSGHSACSRETYHLPLLAFLLC*VVRRLL Trigger: CAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGC...TAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCTGAGGGATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS-3UTR CAA 90 bp | AGGACACTCGGCATGCTCTCGGGAGACCTACCACCTCCCACTCTTAGGGAGAATCTGATGAGGCAGAGGTaGAGAATGGAGGCGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: RTLGMLSGDLPPPTLRENLMRQR*RMEALQ Trigger: CTGCAGCGCCTCCATTCTCAACCTCTGCCTCATCAG...ATTCTCCCTAAGAGTGGGAGGTGGTAGGTCTCCCGAGAGCATGCCGAGTGTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105802.8 |
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| CDS TCA 72 bp | ACCTGCTGCAGGCTGAGGCCTGGCCTGGCACCACTGTaGGAGGTCCACATGGAGGGGGAGGCGGGGCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: TCCRLRPGLAPL*EVHMEGEAGLA Trigger: GGCCAGCCCCGCCTCCCCCTCCATGTGGACCTCTCACAGTGGTGCCAGGCCAGGCCTCAGCCTGCAGCAGGT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 90 bp | TTGCGCAGCGCGGGCTGCGTGCAGATGAGCGCGATCAGCAGCGAATaGGCGGCTGCCGTCAGCACGATGACCACGCACAGCGCAGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: LRSAGCVQMSAISSE*AAAVSTMTTHSAAA Trigger: GGCCGCTGCGCTGTGCGTGGTCATCGTGCTGACGGCAGCCGCCAATTCGCTGCTGATCGCGCTCATCTGCACGCAGCCCGCGCTGCGCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS TCA 72 bp | CGATCAGCAGCGAATTGGCGGCTGCCGTCAGCACGATaGCCACGCACAGCGCAGCGGCCACCCAGCCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RSAANWRLPSAR*PRTAQRPPSRC Trigger: GCAGCGGCTGGGTGGCCGCTGCGCTGTGCGTGGTCATCGTGCTGACGGCAGCCGCCAATTCGCTGCTGATCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS GCA 72 bp | CCAGCCGTAGCCGTGCCCGTGGTGAGCGAGGCCACTTaGACCGCCTGCTTGCGGGCAGCCAGCAAGATCCTG | + |
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Preference number: 6 (lower is better) Translates to: PAVAVPVVSEAT*TACLRAASKIL Trigger: CAGGATCTTGCTGGCTGCCCGCAAGCAGGCGGTGCAAGTGGCCTCGCTCACCACGGGCACGGCTACGGCTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 72 bp | CGTGGTGTCCTGGGCACCTGCAAGGTTTCCAAGGCCTaGCCAGCCGTAGCCGTGCCCGTGGTGAGCGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: RGVLGTCKVSKA*PAVAVPVVSEA Trigger: GGCCTCGCTCACCACGGGCACGGCTACGGCTGGCCAGGCCTTGGAAACCTTGCAGGTGCCCAGGACACCACG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 72 bp | GCCAGCCGTAGCCGTGCCCGTGGTGAGCGAGGCCACTaGCACCGCCTGCTTGCGGGCAGCCAGCAAGATCCT | + |
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Preference number: 6 (lower is better) Translates to: ASRSRARGERGH*HRLLAGSQQDP Trigger: AGGATCTTGCTGGCTGCCCGCAAGCAGGCGGTGCAAGTGGCCTCGCTCACCACGGGCACGGCTACGGCTGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 90 bp | CAAGGCCTGGCCAGCCGTAGCCGTGCCCGTGGTGAGCGAGGCCACTaGCACCGCCTGCTTGCGGGCAGCCAGCAAGATCCTGCAGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: QGLASRSRARGERGH*HRLLAGSQQDPAVG Trigger: ACCTACTGCAGGATCTTGCTGGCTGCCCGCAAGCAGGCGGTGCAAGTGGCCTCGCTCACCACGGGCACGGCTACGGCTGGCCAGGCCTTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS TCA 72 bp | CCCGGGTCGCCTCTCCAGGCAGCAAAAGCTGGGCTGTaGGCTGCAGGCCCGAGGTGCCCCCTGAAGCTGAGT | + |
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Preference number: 6 (lower is better) Translates to: PGSPLQAAKAGL*AAGPRCPLKLS Trigger: ACTCAGCTTCAGGGGGCACCTCGGGCCTGCAGCTCACAGCCCAGCTTTTGCTGCCTGGAGAGGCGACCCGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS GCA 72 bp | CGTGCAGATGAGCGCGATCAGCAGCGAATTGGCGGCTaGCGTCAGCACGATGACCACGCACAGCGCAGCGGC | + |
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Preference number: 6 (lower is better) Translates to: RADERDQQRIGG*RQHDDHAQRSG Trigger: GCCGCTGCGCTGTGCGTGGTCATCGTGCTGACGGCAGCCGCCAATTCGCTGCTGATCGCGCTCATCTGCACG 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 72 bp | GCGGGCTGCGTGCAGATGAGCGCGATCAGCAGCGAATaGGCGGCTGCCGTCAGCACGATGACCACGCACAGC | + |
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Preference number: 6 (lower is better) Translates to: AGCVQMSAISSE*AAAVSTMTTHS Trigger: GCTGTGCGTGGTCATCGTGCTGACGGCAGCCGCCAATTCGCTGCTGATCGCGCTCATCTGCACGCAGCCCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS GCA 72 bp | ATAGGCGGCACTGGCCCGGGGCAGATGTTCGAGCTTTaGCCAGTTCATGCCAGCCCAGCAAGAGGGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: IGGTGPGQMFEL*PVHASPARGAG Trigger: TCCTGCCCCTCTTGCTGGGCTGGCATGAACTGGGCAAAGCTCGAACATCTGCCCCGGGCCAGTGCCGCCTAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS GCA 72 bp | GTCGCCTCTCCAGGCAGCAAAAGCTGGGCTGTGAGCTaGAGGCCCGAGGTGCCCCCTGAAGCTGAGTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: VASPGSKSWAVS*RPEVPPEAESE Trigger: TTCAGACTCAGCTTCAGGGGGCACCTCGGGCCTGCAGCTCACAGCCCAGCTTTTGCTGCCTGGAGAGGCGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 72 bp | AATAGGCGGCACTGGCCCGGGGCAGATGTTCGAGCTTaGCCCAGTTCATGCCAGCCCAGCAAGAGGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: NRRHWPGADVRA*PSSCQPSKRGR Trigger: CCTGCCCCTCTTGCTGGGCTGGCATGAACTGGGCAAAGCTCGAACATCTGCCCCGGGCCAGTGCCGCCTATT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 72 bp | GAGCTAGCACCCAGCGCCCATACAGCGCGTTCAGCATaGCTGGGGGCATCACCACCAATCCCACCATCAGGT | + |
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Preference number: 6 (lower is better) Translates to: ELAPSAHTARSA*LGASPPIPPSG Trigger: ACCTGATGGTGGGATTGGTGGTGATGCCCCCAGCCATGCTGAACGCGCTGTATGGGCGCTGGGTGCTAGCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 90 bp | AGGATGCCGAGGGTCAGGCTGGCCTTCAAGGCCTTCCTGCTATGCTaGGTGGTCAGACGCCTACTGTCAGCAGACTCCATCCCTGGGCGT | + |
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Preference number: 6 (lower is better) Translates to: RMPRVRLAFKAFLLC*VVRRLLSADSIPGR Trigger: ACGCCCAGGGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGGCATCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS GCA 72 bp | CCGAGGGTCAGGCTGGCCTTCAAGGCCTTCCTGCTATaGTTGGTGGTCAGACGCCTACTGTCAGCAGACTCC | + |
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Preference number: 6 (lower is better) Translates to: PRVRLAFKAFLL*LVVRRLLSADS Trigger: GGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 72 bp | GGTGGTCAGACGCCTACTGTCAGCAGACTCCATCCCTaGGCGTGGTGTCCTGGGCACCTGCAAGGTTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: GGQTPTVSRLHP*AWCPGHLQGFQ Trigger: TTGGAAACCTTGCAGGTGCCCAGGACACCACGCCCAGGGATGGAGTCTGCTGACAGTAGGCGTCTGACCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 72 bp | GACGTGAAGAGCGACACCAGGAAGAAGTTAGACGTGTaGCGCAGCGCGGGCTGCGTGCAGATGAGCGCGATC | + |
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Preference number: 6 (lower is better) Translates to: DVKSDTRKKLDV*RSAGCVQMSAI Trigger: GATCGCGCTCATCTGCACGCAGCCCGCGCTGCGCAACACGTCTAACTTCTTCCTGGTGTCGCTCTTCACGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 90 bp | ATCAGGTCCGACGTGAAGAGCGACACCAGGAAGAAGTTAGACGTGTaGCGCAGCGCGGGCTGCGTGCAGATGAGCGCGATCAGCAGCGAA | + |
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Preference number: 6 (lower is better) Translates to: IRSDVKSDTRKKLDV*RSAGCVQMSAISSE Trigger: TTCGCTGCTGATCGCGCTCATCTGCACGCAGCCCGCGCTGCGCAACACGTCTAACTTCTTCCTGGTGTCGCTCTTCACGTCGGACCTGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 72 bp | GGGTCAGGCTGGCCTTCAAGGCCTTCCTGCTATGCTTaGTGGTCAGACGCCTACTGTCAGCAGACTCCATCC | + |
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Preference number: 6 (lower is better) Translates to: GSGWPSRPSCYA*WSDAYCQQTPS Trigger: GGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 72 bp | TCAGGCTGGCCTTCAAGGCCTTCCTGCTATGCTTGGTaGTCAGACGCCTACTGTCAGCAGACTCCATCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SGWPSRPSCYAW*SDAYCQQTPSL Trigger: CAGGGATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CAA 72 bp | AGGGTCAGGCTGGCCTTCAAGGCCTTCCTGCTATGCTaGGTGGTCAGACGCCTACTGTCAGCAGACTCCATC | + |
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Preference number: 6 (lower is better) Translates to: RVRLAFKAFLLC*VVRRLLSADSI Trigger: GATGGAGTCTGCTGACAGTAGGCGTCTGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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| CDS CCA 72 bp | CAAAGAACATGCTCAGCAGGATGCCGAGGGTCAGGCTaGCCTTCAAGGCCTTCCTGCTATGCTTGGTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: QRTCSAGCRGSG*PSRPSCYAWWS Trigger: TGACCACCAAGCATAGCAGGAAGGCCTTGAAGGCCAGCCTGACCCTCGGCATCCTGCTGAGCATGTTCTTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068036.2 ENSMUST00000105802.8 |
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