Pregenerated sensors for HTR5B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050534Ensembl transcript IDs: ENSMUST00000055884.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGTGTCATCATCGGGCCGTGGGTGGTGGGGAGAAGGTCTCGGGTaGAATGAGGATCACAGGTCCCCTTTCTCTTCCCAGGTCTTCCCT | + |
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Preference number: 1 (lower is better) Translates to: GVSSSGRGWWGEGLG*NEDHRSPFSSQVFP Trigger: AGGGAAGACCTGGGAAGAGAAAGGGGACCTGTGATCCTCATTTCACCCGAGACCTTCTCCCCACCACCCACGGCCCGATGATGACACTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR CCA 90 bp | AAGCTTCAGGTGAGGCCCGCTTCTAAGCTGAGAATCATTGTCCTGTaGAGGTTGTATAGGAGGCTAAGAAAGGGAAACTCCTCTGATGGA | + |
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Preference number: 1 (lower is better) Translates to: KLQVRPASKLRIIVL*RLYRRLRKGNSSDG Trigger: TCCATCAGAGGAGTTTCCCTTTCTTAGCCTCCTATACAACCTCCACAGGACAATGATTCTCAGCTTAGAAGCGGGCCTCACCTGAAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR GCA 90 bp | CTAATAATGTCTGTCACGTCCTTCTGTAGAAGGCATGGGTGTGTTTaGCAAACAGTTGCCAACCTCCATGAGAACTCTTCAACGTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: LIMSVTSFCRRHGCV*QTVANLHENSSTFQ Trigger: CTGGAACGTTGAAGAGTTCTCATGGAGGTTGGCAACTGTTTGGCAAACACACCCATGCCTTCTACAGAAGGACGTGACAGACATTATTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCCCGCTTCTAAGCTGAGAATCATTGTCCTGTGGAGGTTGTATAGGAGGCTAAGGTCTCGGGTGAAATaGGGATCACAGGTCCCCTTT | + |
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Preference number: 2 (lower is better) Translates to: RPASKLRIIVLWRLYRRLRSRVK*GSQVPF Trigger: AAAGGGGACCTGTGATCCTCATTTCACCCGAGACCT...TAGCCTCCTATACAACCTCCACAGGACAATGATTCTCAGCTTAGAAGCGGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR-3UTR TCA 90 bp | AATGCTCACCAATACCTAAAATCTATCCTGAAAGTGTTTGGCAGGGTTTCTGCCGGAGAAGGTCTCGGGTaGAATGAGGATCACAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: NAHQYLKSILKVFGRVSAGEGLG*NEDHRS Trigger: GGACCTGTGATCCTCATTTCACCCGAGACCTTCTCC...GGCAGAAACCCTGCCAAACACTTTCAGGATAGATTTTAGGTATTGGTGAGCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR TCA 72 bp | GGGCCGTGGGTGGTGGGGAGAAGGTCTCGGGTGAAATaGGGATCACAGGTCCCCTTTCTCTTCCCAGGTCTT | + |
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Preference number: 3 (lower is better) Translates to: GPWVVGRRSRVK*GSQVPFLFPGL Trigger: AAGACCTGGGAAGAGAAAGGGGACCTGTGATCCTCATTTCACCCGAGACCTTCTCCCCACCACCCACGGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR TCA 72 bp | TCATCGGGCCGTGGGTGGTGGGGAGAAGGTCTCGGGTaGAATGAGGATCACAGGTCCCCTTTCTCTTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: SSGRGWWGEGLG*NEDHRSPFSSQ Trigger: CTGGGAAGAGAAAGGGGACCTGTGATCCTCATTTCACCCGAGACCTTCTCCCCACCACCCACGGCCCGATGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR CCA 72 bp | GTGAGGCCCGCTTCTAAGCTGAGAATCATTGTCCTGTaGAGGTTGTATAGGAGGCTAAGAAAGGGAAACTCC | + |
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Preference number: 3 (lower is better) Translates to: VRPASKLRIIVL*RLYRRLRKGNS Trigger: GGAGTTTCCCTTTCTTAGCCTCCTATACAACCTCCACAGGACAATGATTCTCAGCTTAGAAGCGGGCCTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR GCA 72 bp | TCTGTCACGTCCTTCTGTAGAAGGCATGGGTGTGTTTaGCAAACAGTTGCCAACCTCCATGAGAACTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: SVTSFCRRHGCV*QTVANLHENSS Trigger: TGAAGAGTTCTCATGGAGGTTGGCAACTGTTTGGCAAACACACCCATGCCTTCTACAGAAGGACGTGACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTCACCAATACCTAAAATCTATCCTGAAAGTGTTTGGCAGGGTTTCTGCCTAGTGTTTGCCAAACAGTaGCCAACCTCCATGAGAACT | + |
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Preference number: 3 (lower is better) Translates to: CSPIPKIYPESVWQGFCLVFAKQ*PTSMRT Trigger: AGTTCTCATGGAGGTTGGCAACTGTTTGGCAAACAC...TAGGCAGAAACCCTGCCAAACACTTTCAGGATAGATTTTAGGTATTGGTGAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR CCA 72 bp | TGCTCACCAATACCTAAAATCTATCCTGAAAGTGTTTaGCAGGGTTTCTGCCTAGTGCAGAAATGGAGCACA | + |
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Preference number: 3 (lower is better) Translates to: CSPIPKIYPESV*QGFCLVQKWST Trigger: TGTGCTCCATTTCTGCACTAGGCAGAAACCCTGCCAAACACTTTCAGGATAGATTTTAGGTATTGGTGAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| 3UTR GCA 72 bp | AGCAAATCAACTTTGTCACATGTGAGGTCTAACAAATaGTCACCAATACCTAAAATCTATCCTGAAAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: SKSTLSHVRSNK*SPIPKIYPESV Trigger: AACACTTTCAGGATAGATTTTAGGTATTGGTGAGCATTTGTTAGACCTCACATGTGACAAAGTTGATTTGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR TCA 90 bp | GACTTTTGGAGTGTCATCATCGGGCCGTGGGTGGTGGGGAGAAGGTCTCGGGTGTCACCACAAGCACGGTaGAAGCAGAGAAGGGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: DFWSVIIGPWVVGRRSRVSPQAR*KQRRAA Trigger: AGCCGCCCTTCTCTGCTTTCACCGTGCTTGTGGTGA...CACCCGAGACCTTCTCCCCACCACCCACGGCCCGATGATGACACTCCAAAAGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR GCA 90 bp | GGGGAGAAGGTCTCGGGTGAAATGAGGATCACAGGTCCCCTTTCTCTTCCCAGGAAGCACGGCTCCGGGTaGGCAGCGTGTACTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: GEKVSGEMRITGPLSLPRKHGSG*AACTAG Trigger: ACCTGCAGTACACGCTGCGCACCCGGAGCCGTGCTT...CCTGGGAAGAGAAAGGGGACCTGTGATCCTCATTTCACCCGAGACCTTCTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR GCA 90 bp | GGGGAGAAGGTCTCGGGTGAAATGAGGATCACAGGTCCCCTTTCTCTTCCCAGGCTGGAAGGTTACTGTTaGTCGGCGACGGGCTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: GEKVSGEMRITGPLSLPRLEGYC*SATGCE Trigger: TTCACAGCCCGTCGCCGAGCAACAGTAACCTTCCAG...CCTGGGAAGAGAAAGGGGACCTGTGATCCTCATTTCACCCGAGACCTTCTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CCA 90 bp | CAATGGTATGACTTTTGGAGTGTCATCATCGGGCCGTGGGTGGTGGGGAGAAGGGCTTTTCCAGATGGGTaGCAGGCTGCAGGCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: QWYDFWSVIIGPWVVGRRAFPDG*QAAGTE Trigger: CTCTGTGCCTGCAGCCTGCCACCCATCTGGAAAAGC...CCTTCTCCCCACCACCCACGGCCCGATGATGACACTCCAAAAGTCATACCATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR GCA 90 bp | AAGGCTGTGTCAAGGAGACAGACTCAGGAAACTCCTGAGAGAGGACACAGTACTCCCGACCATCATGGCTaGCCGCTTCTCCTTCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: KAVSRRQTQETPERGHSTPDHHG*PLLLLL Trigger: GAGCAGAAGGAGAAGCGGGCAGCCATGATGGTCGGG...AGTACTGTGTCCTCTCTCAGGAGTTTCCTGAGTCTGTCTCCTTGACACAGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR GCA 90 bp | AGGCATGGGTGTGTTTGCCAAACAGTTGCCAACCTCCATGAGAACTCTTCAACGTCCAGATGCTGGCGGTaGAGCACAACACGTCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RHGCVCQTVANLHENSSTSRCWR*STTRRR Trigger: CCTTCGACGTGTTGTGCTGCACCGCCAGCATCTGGA...CGTTGAAGAGTTCTCATGGAGGTTGGCAACTGTTTGGCAAACACACCCATGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CCA 90 bp | GACTTTTGGAGTGTCATCATCGGGCCGTGGGTGGTGGGGAGAAGGTCTCGGGTGGATTCCATAAGAAAGTaGCAACGATCAGCAACACCA | + |
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Preference number: 4 (lower is better) Translates to: DFWSVIIGPWVVGRRSRVDSIRK*QRSATP Trigger: TGGTGTTGCTGATCGTTGCCACTTTCTTATGGAATC...CACCCGAGACCTTCTCCCCACCACCCACGGCCCGATGATGACACTCCAAAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CCA 90 bp | GAAAGGCTGTGTCAAGGAGACAGACTCAGGAAACTCCTGAGAGAGGACACAGTACCACGTTCCAGATGCTaGCGGTGCAGCACAACACGT | + |
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Preference number: 4 (lower is better) Translates to: ERLCQGDRLRKLLREDTVPRSRC*RCSTTR Trigger: ACGTGTTGTGCTGCACCGCCAGCATCTGGAACGTGG...TACTGTGTCCTCTCTCAGGAGTTTCCTGAGTCTGTCTCCTTGACACAGCCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CCA 90 bp | GAAAGGCTGTGTCAAGGAGACAGACTCAGGAAACTCCTGAGAGAGGACACAGTAAGAAGGCTCCGCAGGTaGAGAAGACAGCATAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: ERLCQGDRLRKLLREDTVRRLRR*RRQHRR Trigger: CCTCCTATGCTGTCTTCTCCACCTGCGGAGCCTTCT...TACTGTGTCCTCTCTCAGGAGTTTCCTGAGTCTGTCTCCTTGACACAGCCTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CCA 90 bp | AGGCATGGGTGTGTTTGCCAAACAGTTGCCAACCTCCATGAGAACTCTTCAACGCACCATCTCAGACTCTaGAGGTGCTTCCTTTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RHGCVCQTVANLHENSSTHHLRL*RCFLCL Trigger: CAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTG...CGTTGAAGAGTTCTCATGGAGGTTGGCAACTGTTTGGCAAACACACCCATGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CCA 90 bp | GGGTGTGTTTGCCAAACAGTTGCCAACCTCCATGAGAACTCTTCAACGTTCCAGATATGCTTTTCCAGATaGGTGGCAGGCTGCAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: GCVCQTVANLHENSSTFQICFSR*VAGCRH Trigger: GTGCCTGCAGCCTGCCACCCATCTGGAAAAGCATAT...CTGGAACGTTGAAGAGTTCTCATGGAGGTTGGCAACTGTTTGGCAAACACACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CCA 90 bp | CCAACCTCCATGAGAACTCTTCAACGTTCCAGGCCCAATGGTATGACTTTTGGAGGCCGAATCGAAATTTaGCGGCTTTGTATATTTTCC | + |
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Preference number: 4 (lower is better) Translates to: PTSMRTLQRSRPNGMTFGGRIEI*RLCIFS Trigger: GGAAAATATACAAAGCCGCCAAATTTCGATTCGGCC...TCCAAAAGTCATACCATTGGGCCTGGAACGTTGAAGAGTTCTCATGGAGGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS GCA 90 bp | CGGGCTGTGAACACCATCTCAGACTCTGGAGGTGCTTCCTTTGCCTaGGTGGTGGCAGGAAGCGGTACCACCGCCCGCCGTCTGCGGCCG | + |
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Preference number: 5 (lower is better) Translates to: RAVNTISDSGGASFA*VVAGSGTTARRLRP Trigger: CGGCCGCAGACGGCGGGCGGTGGTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS GCA 90 bp | GCGACGGGCTGTGAACACCATCTCAGACTCTGGAGGTGCTTCCTTTaGCTGCGTGGTGGCAGGAAGCGGTACCACCGCCCGCCGTCTGCG | + |
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Preference number: 5 (lower is better) Translates to: ATGCEHHLRLWRCFL*LRGGRKRYHRPPSA Trigger: CGCAGACGGCGGGCGGTGGTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCGTCGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS GCA 90 bp | TGTTGCTCGGCGACGGGCTGTGAACACCATCTCAGACTCTGGAGGTaGTTCCTTTGCCTGCGTGGTGGCAGGAAGCGGTACCACCGCCCG | + |
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Preference number: 5 (lower is better) Translates to: CCSATGCEHHLRLWR*FLCLRGGRKRYHRP Trigger: CGGGCGGTGGTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCGTCGCCGAGCAACA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 90 bp | GGTTACTGTTGCTCGGCGACGGGCTGTGAACACCATCTCAGACTCTaGAGGTGCTTCCTTTGCCTGCGTGGTGGCAGGAAGCGGTACCAC | + |
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Preference number: 5 (lower is better) Translates to: GYCCSATGCEHHLRL*RCFLCLRGGRKRYH Trigger: GTGGTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCGTCGCCGAGCAACAGTAACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS-3UTR CAA 90 bp | ATGACTTTTGGAGTGTCATCATCGGGCCGTGGGTGGTGGGGAGAAGGTCTCGGGTGCTCCTGCCGGAACTaGGGCTGTCACTGCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: MTFGVSSSGRGWWGEGLGCSCRN*GCHCSS Trigger: AGAGCTGCAGTGACAGCCCAAGTTCCGGCAGGAGCA...CCCGAGACCTTCTCCCCACCACCCACGGCCCGATGATGACACTCCAAAAGTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS TCA 90 bp | AGTCTCCGCTTGTCTGGAAGGTTACTGTTGCTCGGCGACGGGCTGTaGACACCATCTCAGACTCTGGAGGTGCTTCCTTTGCCTGCGTGG | + |
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Preference number: 5 (lower is better) Translates to: SLRLSGRLLLLGDGL*TPSQTLEVLPLPAW Trigger: CCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCGTCGCCGAGCAACAGTAACCTTCCAGACAAGCGGAGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 90 bp | CAGGAAGCGGTACCACCGCCCGCCGTCTGCGGCCGAATCGAAATTTaGCGGCTTTGTATATTTTCCAGTAGACGAAGAGCACCACCGCCA | + |
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Preference number: 5 (lower is better) Translates to: QEAVPPPAVCGRIEI*RLCIFSSRRRAPPP Trigger: TGGCGGTGGTGCTCTTCGTCTACTGGAAAATATACAAAGCCGCCAAATTTCGATTCGGCCGCAGACGGCGGGCGGTGGTACCGCTTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 72 bp | TCTCAGACTCTGGAGGTGCTTCCTTTGCCTGCGTGGTaGCAGGAAGCGGTACCACCGCCCGCCGTCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: SQTLEVLPLPAW*QEAVPPPAVCG Trigger: GCCGCAGACGGCGGGCGGTGGTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 72 bp | CCCACCTGGGGTGGATCCCATGCTCCTGCCGGAACTTaGGCTGTCACTGCAGCTCTCGGGTCCCGGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: PTWGGSHAPAGT*AVTAALGSRRK Trigger: TTTCCTCCGGGACCCGAGAGCTGCAGTGACAGCCCAAGTTCCGGCAGGAGCATGGGATCCACCCCAGGTGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 72 bp | CCATCTCAGACTCTGGAGGTGCTTCCTTTGCCTGCGTaGTGGCAGGAAGCGGTACCACCGCCCGCCGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: PSQTLEVLPLPA*WQEAVPPPAVC Trigger: GCAGACGGCGGGCGGTGGTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS GCA 72 bp | TGTGAACACCATCTCAGACTCTGGAGGTGCTTCCTTTaGCTGCGTGGTGGCAGGAAGCGGTACCACCGCCCG | + |
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Preference number: 6 (lower is better) Translates to: CEHHLRLWRCFL*LRGGRKRYHRP Trigger: CGGGCGGTGGTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS GCA 72 bp | GCGACGGGCTGTGAACACCATCTCAGACTCTGGAGGTaGTTCCTTTGCCTGCGTGGTGGCAGGAAGCGGTAC | + |
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Preference number: 6 (lower is better) Translates to: ATGCEHHLRLWR*FLCLRGGRKRY Trigger: GTACCGCTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCGTCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 72 bp | ACGGCTGTCGAGGCCACCAAGTTATGTGGCACGCGGTaGAAGGCGCGGACACGCAGGATAGTCACCAGAACT | + |
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Preference number: 6 (lower is better) Translates to: TAVEATKLCGTR*KARTRRIVTRT Trigger: AGTTCTGGTGACTATCCTGCGTGTCCGCGCCTTCCACCGCGTGCCACATAACTTGGTGGCCTCGACAGCCGT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 72 bp | TGCTCGGCGACGGGCTGTGAACACCATCTCAGACTCTaGAGGTGCTTCCTTTGCCTGCGTGGTGGCAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: CSATGCEHHLRL*RCFLCLRGGRK Trigger: CTTCCTGCCACCACGCAGGCAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCGTCGCCGAGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS TCA 72 bp | CGATCAGCAACACCAGTAGAGTCACCACAAGCACGGTaGAAGCAGAGAAGGGCGGCTCGCGGCCAGGCAAGA | + |
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Preference number: 6 (lower is better) Translates to: RSATPVESPQAR*KQRRAARGQAR Trigger: TCTTGCCTGGCCGCGAGCCGCCCTTCTCTGCTTTCACCGTGCTTGTGGTGACTCTACTGGTGTTGCTGATCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS GCA 72 bp | CCGCCACGAGTCTCCGCTTGTCTGGAAGGTTACTGTTaGTCGGCGACGGGCTGTGAACACCATCTCAGACTC | + |
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Preference number: 6 (lower is better) Translates to: PPRVSACLEGYC*SATGCEHHLRL Trigger: GAGTCTGAGATGGTGTTCACAGCCCGTCGCCGAGCAACAGTAACCTTCCAGACAAGCGGAGACTCGTGGCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS TCA 72 bp | TTGTCTGGAAGGTTACTGTTGCTCGGCGACGGGCTGTaGACACCATCTCAGACTCTGGAGGTGCTTCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LSGRLLLLGDGL*TPSQTLEVLPL Trigger: CAAAGGAAGCACCTCCAGAGTCTGAGATGGTGTTCACAGCCCGTCGCCGAGCAACAGTAACCTTCCAGACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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| CDS CCA 72 bp | GTACCACCGCCCGCCGTCTGCGGCCGAATCGAAATTTaGCGGCTTTGTATATTTTCCAGTAGACGAAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: VPPPAVCGRIEI*RLCIFSSRRRA Trigger: TGCTCTTCGTCTACTGGAAAATATACAAAGCCGCCAAATTTCGATTCGGCCGCAGACGGCGGGCGGTGGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055884.8 |
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