RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HTR3B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000008590

Ensembl transcript IDs: ENSMUST00000008734.5

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GAAGATATCAAATGGAGCTGGACATGGTGGCACAATACATGCAACCTCAGCAATCTGGTTCAGGGAGAGTaGAAGCTTGCTTGTCACTGC +
Preference number: 2 (lower is better)
Translates to: EDIKWSWTWWHNTCNLSNLVQGE*KLACHC
Trigger: GCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAG...ATTGCTGAGGTTGCATGTATTGTGCCACCATGTCCAGCTCCATTTGATATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR CAA 90 bp AACCTAAGTGTACGCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTaGCTTGTCACTGCATACTCTATTCTGTTTAGACATCTTTATTAT +
Preference number: 2 (lower is better)
Translates to: NLSVRSCCWFRESES*LVTAYSILFRHLYY
Trigger: ATAATAAAGATGTCTAAACAGAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCGTACACTTAGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR-3UTR CCA 90 bp CTAACATATAGACTGTTGAAGCAGAAGATATCAAATGGAGCTGGACATGGTGGCGTAGGTTTACTGGTTTaGTCAATAGCCAATAAGATA +
Preference number: 2 (lower is better)
Translates to: LTYRLLKQKISNGAGHGGVGLLV*SIANKI
Trigger: TATCTTATTGGCTATTGACCAAACCAGTAAACCTAC...GCCACCATGTCCAGCTCCATTTGATATCTTCTGCTTCAACAGTCTATATGTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR CCA 72 bp TGGACATGGTGGCACAATACATGCAACCTCAGCAATTaGAAGGTAGAGGCTGGAATGTCAGGGGTTCAAGGT +
Preference number: 3 (lower is better)
Translates to: WTWWHNTCNLSN*KVEAGMSGVQG
Trigger: ACCTTGAACCCCTGACATTCCAGCCTCTACCTTCCAATTGCTGAGGTTGCATGTATTGTGCCACCATGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR-3UTR CAA 90 bp TGGCACAATACATGCAACCTCAGCAATTGGAAGGTAGAGGCTGGAATGTCAGGGAGGGAGAGTGAAAGCTaGCTTGTCACTGCATACTCT +
Preference number: 3 (lower is better)
Translates to: WHNTCNLSNWKVEAGMSGRESES*LVTAYS
Trigger: AGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCT...CCCTGACATTCCAGCCTCTACCTTCCAATTGCTGAGGTTGCATGTATTGTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR TCA 72 bp CCTAAGTGTACGCAGTTGCTGCTGGTTCAGGGAGAGTaGAAGCTTGCTTGTCACTGCATACTCTATTCTGTT +
Preference number: 3 (lower is better)
Translates to: PKCTQLLLVQGE*KLACHCILYSV
Trigger: AACAGAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCGTACACTTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR GCA 72 bp GATATCAAATGGAGCTGGACATGGTGGCACAATACATaGAACCTCAGCAATTGGAAGGTAGAGGCTGGAATG +
Preference number: 3 (lower is better)
Translates to: DIKWSWTWWHNT*NLSNWKVEAGM
Trigger: CATTCCAGCCTCTACCTTCCAATTGCTGAGGTTGCATGTATTGTGCCACCATGTCCAGCTCCATTTGATATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR CCA 72 bp CAATACATGCAACCTCAGCAATTGGAAGGTAGAGGCTaGAATGTCAGGGGTTCAAGGTTAGCCTGGACTATA +
Preference number: 3 (lower is better)
Translates to: QYMQPQQLEGRG*NVRGSRLAWTI
Trigger: TATAGTCCAGGCTAACCTTGAACCCCTGACATTCCAGCCTCTACCTTCCAATTGCTGAGGTTGCATGTATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR GCA 72 bp TACGCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTaGTTGTCACTGCATACTCTATTCTGTTTAGACATC +
Preference number: 3 (lower is better)
Translates to: YAVAAGSGRVKA*LSLHTLFCLDI
Trigger: GATGTCTAAACAGAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR TCA 90 bp GTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTGCTTGTCACTGCATACTCTATTCGGGCCCAGAGGGCACTaGGAGGGAGAGAGATCTCTT +
Preference number: 4 (lower is better)
Translates to: VAAGSGRVKACLSLHTLFGPRGH*EGERSL
Trigger: AAGAGATCTCTCTCCCTCTCAGTGCCCTCTGGGCCC...GAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CCA 90 bp CGCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTGCTTGTCACTGCATACTCTCAAAGCGATACAGGATaGCCAGCCACTCCACCTCCT +
Preference number: 4 (lower is better)
Translates to: RSCCWFRESESLLVTAYSQSDTG*PATPPP
Trigger: AGGAGGTGGAGTGGCTGGCCATCCTGTATCGCTTTG...AGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR GCA 90 bp ACATGGTGGCACAATACATGCAACCTCAGCAATTGGAAGGTAGAGGCTGGAATGCCCCAATCAGAGGTGTaGACCCTGCACTTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: TWWHNTCNLSNWKVEAGMPQSEV*TLHFLA
Trigger: TGCCAAGAAGTGCAGGGTGCACACCTCTGATTGGGG...CATTCCAGCCTCTACCTTCCAATTGCTGAGGTTGCATGTATTGTGCCACCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR GCA 90 bp CTAAGTGTACGCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTGCTTGTCACTTACTGTTGTAAGAGCTaGCTGGTGAGACGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: LSVRSCCWFRESESLLVTYCCKS*LVRRCR
Trigger: TCTGCACCGTCTCACCAGGCAGCTCTTACAACAGTA...AGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCGTACACTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CCA 90 bp TTGGAAGGTAGAGGCTGGAATGTCAGGGGTTCAAGGTTAGCCTGGACTATAAGACCAGGTAGACAGTGGTaGCCTCAGCCCAGTTGTAAA +
Preference number: 4 (lower is better)
Translates to: LEGRGWNVRGSRLAWTIRPGRQW*PQPSCK
Trigger: TTTACAACTGGGCTGAGGCCACCACTGTCTACCTGG...TCTTATAGTCCAGGCTAACCTTGAACCCCTGACATTCCAGCCTCTACCTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CCA 90 bp TGGCACAATACATGCAACCTCAGCAATTGGAAGGTAGAGGCTGGAATGTCAGGGCACAACGTAGGCCAATaGACATCTGCGGATCACTAC +
Preference number: 4 (lower is better)
Translates to: WHNTCNLSNWKVEAGMSGHNVGQ*TSADHY
Trigger: GTAGTGATCCGCAGATGTCCATTGGCCTACGTTGTG...CCCTGACATTCCAGCCTCTACCTTCCAATTGCTGAGGTTGCATGTATTGTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR TCA 90 bp GAAGATATCAAATGGAGCTGGACATGGTGGCACAATACATGCAACCTCAGCAATGCATCAGAGTCGCCTTaGAGGCACATAAGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: EDIKWSWTWWHNTCNLSNASESP*RHIRGR
Trigger: ACGGCCTCTTATGTGCCTTCAAGGCGACTCTGATGC...ATTGCTGAGGTTGCATGTATTGTGCCACCATGTCCAGCTCCATTTGATATCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR GCA 90 bp ATGAACCTGGAGGATTTAAGCAGGTTTGAGCAGGGCTTAAGCCAAGCTAACATATGCCTGGTGAGACGGTaGAGAGAAGAATTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: MNLEDLSRFEQGLSQANICLVRR*REEFPG
Trigger: GCCTGGGAATTCTTCTCTGCACCGTCTCACCAGGCA...TATGTTAGCTTGGCTTAAGCCCTGCTCAAACCTGCTTAAATCCTCCAGGTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR GCA 90 bp GTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTGCTTGTCACTGCATACTCTATTCCATATGTCTGCAAACTaGATGCGGAGACCACCTGGA +
Preference number: 4 (lower is better)
Translates to: VAAGSGRVKACLSLHTLFHMSAN*MRRPPG
Trigger: TCCAGGTGGTCTCCGCATGCAGTTTGCAGACATATG...GAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CCA 90 bp TCAGGGAGAGTGAAAGCTTGCTTGTCACTGCATACTCTATTCTGTTTAGACATCGGTCCAGGTAGACAGTaGTGGCCTCAGCCCAGTTGT +
Preference number: 4 (lower is better)
Translates to: SGRVKACLSLHTLFCLDIGPGRQ*WPQPSC
Trigger: ACAACTGGGCTGAGGCCACCACTGTCTACCTGGACC...GATGTCTAAACAGAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CCA 90 bp TCAGGGAGAGTGAAAGCTTGCTTGTCACTGCATACTCTATTCTGTTTAGACATCTGTGACGTCAGCACGTaGAGCCCCGAGGTACAATCT +
Preference number: 4 (lower is better)
Translates to: SGRVKACLSLHTLFCLDICDVST*SPEVQS
Trigger: AGATTGTACCTCGGGGCTCCACGTGCTGACGTCACA...GATGTCTAAACAGAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR CAA 72 bp GTACGCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTaGCTTGTCACTGCATACTCTATTCTGTTTAGACAT +
Preference number: 4 (lower is better)
Translates to: VRSCCWFRESES*LVTAYSILFRH
Trigger: ATGTCTAAACAGAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
3UTR CAA 72 bp GCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTGCTaGTCACTGCATACTCTATTCTGTTTAGACATCTTT +
Preference number: 4 (lower is better)
Translates to: AVAAGSGRVKAC*SLHTLFCLDIF
Trigger: AAAGATGTCTAAACAGAATAGAGTATGCAGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR TCA 90 bp GTATGTATGTATATCCCTCTTCTTCCTCTTATACACACATGCATTAAAAAGGCTGAAGAATTCCCAGGCTaGGGTGTCGCTGTACCTAGG +
Preference number: 4 (lower is better)
Translates to: VCMYIPLLPLIHTCIKKAEEFPG*GVAVPR
Trigger: CCTAGGTACAGCGACACCTCAGCCTGGGAATTCTTC...AGCCTTTTTAATGCATGTGTGTATAAGAGGAAGAAGAGGGATATACATACATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR GCA 90 bp GTATGTATGTATATCCCTCTTCTTCCTCTTATACACACATGCATTAAAAAGGCTTGTCTGCAAACTGCATaGGGAGACCACCTGGATGGG +
Preference number: 4 (lower is better)
Translates to: VCMYIPLLPLIHTCIKKACLQTA*GDHLDG
Trigger: CCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGACA...AGCCTTTTTAATGCATGTGTGTATAAGAGGAAGAAGAGGGATATACATACATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR TCA 90 bp GAAGCAGAAGATATCAAATGGAGCTGGACATGGTGGCACAATACATGCAACCTCCTTGTCTTTAATTTTTaGTTCTGCACATCCACATCC +
Preference number: 4 (lower is better)
Translates to: EAEDIKWSWTWWHNTCNLLVFNF*FCTSTS
Trigger: GGATGTGGATGTGCAGAATCAAAAATTAAAGACAAG...GAGGTTGCATGTATTGTGCCACCATGTCCAGCTCCATTTGATATCTTCTGCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR GCA 90 bp CTAACATATAGACTGTTGAAGCAGAAGATATCAAATGGAGCTGGACATGGTGGCGACACAGAAAGAAGCTaGCACTCACTGTCATTCATA +
Preference number: 4 (lower is better)
Translates to: LTYRLLKQKISNGAGHGGDTERS*HSLSFI
Trigger: TATGAATGACAGTGAGTGGCAGCTTCTTTCTGTGTC...GCCACCATGTCCAGCTCCATTTGATATCTTCTGCTTCAACAGTCTATATGTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR GCA 90 bp CTAACATATAGACTGTTGAAGCAGAAGATATCAAATGGAGCTGGACATGGTGGCATGTCTTCCACTGTGTaGAGAATGCTATTAAAGGTG +
Preference number: 4 (lower is better)
Translates to: LTYRLLKQKISNGAGHGGMSSTV*RMLLKV
Trigger: CACCTTTAATAGCATTCTGCACACAGTGGAAGACAT...GCCACCATGTCCAGCTCCATTTGATATCTTCTGCTTCAACAGTCTATATGTTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CCA 90 bp GTATGTATATCCCTCTTCTTCCTCTTATACACACATGCATTAAAAAGGCTACCAACCTGGATGGGCTTGTaGTTTCTAATGGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: VCISLFFLLYTHALKRLPTWMGL*FLMVPE
Trigger: TTCTGGCACCATTAGAAACCACAAGCCCATCCAGGT...TGGTAGCCTTTTTAATGCATGTGTGTATAAGAGGAAGAAGAGGGATATACATAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS TCA 90 bp AGAGGCTCACAACGTAGGCCAATGGACATCTGCGGATCACTACGTTaGACCGAATCTGTGCGAAGTCTCCAGCGCTGCTCTGCCGGATGT +
Preference number: 5 (lower is better)
Translates to: RGSQRRPMDICGSLR*TESVRSLQRCSAGC
Trigger: ACATCCGGCAGAGCAGCGCTGGAGACTTCGCACAGATTCGGTTCAACGTAGTGATCCGCAGATGTCCATTGGCCTACGTTGTGAGCCTCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 90 bp GTAGGCCAATGGACATCTGCGGATCACTACGTTGAACCGAATCTGTaGGAAGTCTCCAGCGCTGCTCTGCCGGATGTGGTAAGTAGAGGA +
Preference number: 5 (lower is better)
Translates to: VGQWTSADHYVEPNL*EVSSAALPDVVSRG
Trigger: TCCTCTACTTACCACATCCGGCAGAGCAGCGCTGGAGACTTCGCACAGATTCGGTTCAACGTAGTGATCCGCAGATGTCCATTGGCCTAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 90 bp GGCCATGCAGACGGTAAAGAAGACCCCAATCAGAGGTGTGCACCCTaGACTTCTTGGCACTTCATCAGACATGTTGACCCTGAAGACCGT +
Preference number: 5 (lower is better)
Translates to: GHADGKEDPNQRCAP*TSWHFIRHVDPEDR
Trigger: ACGGTCTTCAGGGTCAACATGTCTGATGAAGTGCCAAGAAGTGCAGGGTGCACACCTCTGATTGGGGTCTTCTTTACCGTCTGCATGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 90 bp GACGGTAAAGAAGACCCCAATCAGAGGTGTGCACCCTGCACTTCTTaGCACTTCATCAGACATGTTGACCCTGAAGACCGTATAGCCCAC +
Preference number: 5 (lower is better)
Translates to: DGKEDPNQRCAPCTS*HFIRHVDPEDRIAH
Trigger: GTGGGCTATACGGTCTTCAGGGTCAACATGTCTGATGAAGTGCCAAGAAGTGCAGGGTGCACACCTCTGATTGGGGTCTTCTTTACCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 90 bp GCAGTTCTGGATATCAAAGGGGAAAGCATATGTCTGCAAACTGCATaGGGAGACCACCTGGATGGGCTTGTGGTTTCTAATGGTGCCAGA +
Preference number: 5 (lower is better)
Translates to: AVLDIKGESICLQTA*GDHLDGLVVSNGAR
Trigger: TCTGGCACCATTAGAAACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGACATATGCTTTCCCCTTTGATATCCAGAACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 90 bp CATCAGGAAGATGCTAGGTATCAAGAGGCTCACAACGTAGGCCAATaGACATCTGCGGATCACTACGTTGAACCGAATCTGTGCGAAGTC +
Preference number: 5 (lower is better)
Translates to: HQEDARYQEAHNVGQ*TSADHYVEPNLCEV
Trigger: GACTTCGCACAGATTCGGTTCAACGTAGTGATCCGCAGATGTCCATTGGCCTACGTTGTGAGCCTCTTGATACCTAGCATCTTCCTGATG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS TCA 90 bp ATGATATCAGGGGCCCAGAGGGCACTGAGAGGGAGAGAGATCTCTTaGATCTCATCGAACAGACTAGAGTTCCAGGACAAAAACTCATCG +
Preference number: 5 (lower is better)
Translates to: MISGAQRALRGREIS*ISSNRLEFQDKNSS
Trigger: CGATGAGTTTTTGTCCTGGAACTCTAGTCTGTTCGATGAGATTCAAGAGATCTCTCTCCCTCTCAGTGCCCTCTGGGCCCCTGATATCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 90 bp TCAAAGGGGAAAGCATATGTCTGCAAACTGCATGCGGAGACCACCTaGATGGGCTTGTGGTTTCTAATGGTGCCAGAAGAGTTCACGTAT +
Preference number: 5 (lower is better)
Translates to: SKGKAYVCKLHAETT*MGLWFLMVPEEFTY
Trigger: ATACGTGAACTCTTCTGGCACCATTAGAAACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGACATATGCTTTCCCCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CAA 90 bp ACATGGTGGCACAATACATGCAACCTCAGCAATTGGAAGGTAGAGGCTGGAATGACTGGTCTGACCTCCTaGTGGTACTGTTGTAAGAGC +
Preference number: 5 (lower is better)
Translates to: TWWHNTCNLSNWKVEAGMTGLTS*WYCCKS
Trigger: GCTCTTACAACAGTACCACAAGGAGGTCAGACCAGT...CATTCCAGCCTCTACCTTCCAATTGCTGAGGTTGCATGTATTGTGCCACCATGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CAA 90 bp CTAAGTGTACGCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTGCTTGTCACTAGGGAGAGAGATCTCTaGAATCTCATCGAACAGACT +
Preference number: 5 (lower is better)
Translates to: LSVRSCCWFRESESLLVTRERDL*NLIEQT
Trigger: AGTCTGTTCGATGAGATTCAAGAGATCTCTCTCCCT...AGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCGTACACTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 90 bp TCTTCCACTGTGTGCAGAATGCTATTAAAGGTGAGGCTGCAGTTCTaGATATCAAAGGGGAAAGCATATGTCTGCAAACTGCATGCGGAG +
Preference number: 5 (lower is better)
Translates to: SSTVCRMLLKVRLQF*ISKGKAYVCKLHAE
Trigger: CTCCGCATGCAGTTTGCAGACATATGCTTTCCCCTTTGATATCCAGAACTGCAGCCTCACCTTTAATAGCATTCTGCACACAGTGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 90 bp TCTTCTCTATTCCTCAGGAAGCCCAGGTCTATGTCTTCCACTGTGTaGAGAATGCTATTAAAGGTGAGGCTGCAGTTCTGGATATCAAAG +
Preference number: 5 (lower is better)
Translates to: SSLFLRKPRSMSSTV*RMLLKVRLQFWISK
Trigger: CTTTGATATCCAGAACTGCAGCCTCACCTTTAATAGCATTCTGCACACAGTGGAAGACATAGACCTGGGCTTCCTGAGGAATAGAGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CAA 90 bp CTAAGTGTACGCAGTTGCTGCTGGTTCAGGGAGAGTGAAAGCTTGCTTGTCACTCTCGGTACCACACGCTaGTCTTTAATTTTTGATTCT +
Preference number: 5 (lower is better)
Translates to: LSVRSCCWFRESESLLVTLGTTR*SLIFDS
Trigger: AGAATCAAAAATTAAAGACAAGCGTGTGGTACCGAG...AGTGACAAGCAAGCTTTCACTCTCCCTGAACCAGCAGCAACTGCGTACACTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CAA 90 bp CTAACATATAGACTGTTGAAGCAGAAGATATCAAATGGAGCTGGACATGGTGGCACCAGCACATTGGTCTaGAACACAATTCTTGCACGG +
Preference number: 5 (lower is better)
Translates to: LTYRLLKQKISNGAGHGGTSTLV*NTILAR
Trigger: CCGTGCAAGAATTGTGTTCAAGACCAATGTGCTGGT...GCCACCATGTCCAGCTCCATTTGATATCTTCTGCTTCAACAGTCTATATGTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS-3UTR CAA 90 bp GTAGGTTTACTGGTTTGGTCAATAGCCAATAAGATACTTGTCTCTGTAGTCACTTGCACCCTGCACTTCTaGGCACTTCATCAGACATGT +
Preference number: 5 (lower is better)
Translates to: VGLLVWSIANKILVSVVTCTLHF*ALHQTC
Trigger: ACATGTCTGATGAAGTGCCAAGAAGTGCAGGGTGCA...AGTGACTACAGAGACAAGTATCTTATTGGCTATTGACCAAACCAGTAAACCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS TCA 72 bp TGCCTGGTGAGACGGTGCAGAGAAGAATTCCCAGGCTaGGGTGTCGCTGTACCTAGGATACCTACTACAGCC +
Preference number: 6 (lower is better)
Translates to: CLVRRCREEFPG*GVAVPRIPTTA
Trigger: GGCTGTAGTAGGTATCCTAGGTACAGCGACACCTCAGCCTGGGAATTCTTCTCTGCACCGTCTCACCAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 72 bp TGGACATCTGCGGATCACTACGTTGAACCGAATCTGTaGGAAGTCTCCAGCGCTGCTCTGCCGGATGTGGTA +
Preference number: 6 (lower is better)
Translates to: WTSADHYVEPNL*EVSSAALPDVV
Trigger: TACCACATCCGGCAGAGCAGCGCTGGAGACTTCGCACAGATTCGGTTCAACGTAGTGATCCGCAGATGTCCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS TCA 72 bp CAACGTAGGCCAATGGACATCTGCGGATCACTACGTTaGACCGAATCTGTGCGAAGTCTCCAGCGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: QRRPMDICGSLR*TESVRSLQRCS
Trigger: AGAGCAGCGCTGGAGACTTCGCACAGATTCGGTTCAACGTAGTGATCCGCAGATGTCCATTGGCCTACGTTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS TCA 72 bp ACATTCTGCTCCACAGTGCCCAGAGAGAGCATAAGGTaGCGGTATAGAGCCCCAGCACGGCAAGGTAGATTC +
Preference number: 6 (lower is better)
Translates to: TFCSTVPRESIR*RYRAPARQGRF
Trigger: GAATCTACCTTGCCGTGCTGGGGCTCTATACCGTCACCTTATGCTCTCTCTGGGCACTGTGGAGCAGAATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 72 bp ACTGGTCTGACCTCCTTGTGGTACTGTTGTAAGAGCTaGCTGGTGAGACGGTGCAGAGAAGAATTCCCAGGC +
Preference number: 6 (lower is better)
Translates to: TGLTSLWYCCKS*LVRRCREEFPG
Trigger: GCCTGGGAATTCTTCTCTGCACCGTCTCACCAGGCAGCTCTTACAACAGTACCACAAGGAGGTCAGACCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CAA 90 bp CTCCTCGGCATCAGAGTCGCCTTGAAGGCACATAAGAGGCCGTTCTaGCCCACTGTGCCGCTCCTCATAGAGGAATTTGATCAGCAAGAT +
Preference number: 6 (lower is better)
Translates to: LLGIRVALKAHKRPF*PTVPLLIEEFDQQD
Trigger: ATCTTGCTGATCAAATTCCTCTATGAGGAGCGGCACAGTGGGCAAGAACGGCCTCTTATGTGCCTTCAAGGCGACTCTGATGCCGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS TCA 72 bp GGGGCCCAGAGGGCACTGAGAGGGAGAGAGATCTCTTaGATCTCATCGAACAGACTAGAGTTCCAGGACAAA +
Preference number: 6 (lower is better)
Translates to: GAQRALRGREIS*ISSNRLEFQDK
Trigger: TTTGTCCTGGAACTCTAGTCTGTTCGATGAGATTCAAGAGATCTCTCTCCCTCTCAGTGCCCTCTGGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 72 bp GAAGACCCCAATCAGAGGTGTGCACCCTGCACTTCTTaGCACTTCATCAGACATGTTGACCCTGAAGACCGT +
Preference number: 6 (lower is better)
Translates to: EDPNQRCAPCTS*HFIRHVDPEDR
Trigger: ACGGTCTTCAGGGTCAACATGTCTGATGAAGTGCCAAGAAGTGCAGGGTGCACACCTCTGATTGGGGTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 72 bp GACGGTAAAGAAGACCCCAATCAGAGGTGTGCACCCTaGACTTCTTGGCACTTCATCAGACATGTTGACCCT +
Preference number: 6 (lower is better)
Translates to: DGKEDPNQRCAP*TSWHFIRHVDP
Trigger: AGGGTCAACATGTCTGATGAAGTGCCAAGAAGTGCAGGGTGCACACCTCTGATTGGGGTCTTCTTTACCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CAA 72 bp GTCTGCAAACTGCATGCGGAGACCACCTGGATGGGCTaGTGGTTTCTAATGGTGCCAGAAGAGTTCACGTAT +
Preference number: 6 (lower is better)
Translates to: VCKLHAETTWMG*WFLMVPEEFTY
Trigger: ATACGTGAACTCTTCTGGCACCATTAGAAACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CAA 72 bp ATCAGAGTCGCCTTGAAGGCACATAAGAGGCCGTTCTaGCCCACTGTGCCGCTCCTCATAGAGGAATTTGAT +
Preference number: 6 (lower is better)
Translates to: IRVALKAHKRPF*PTVPLLIEEFD
Trigger: ATCAAATTCCTCTATGAGGAGCGGCACAGTGGGCAAGAACGGCCTCTTATGTGCCTTCAAGGCGACTCTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 72 bp TCTGGATATCAAAGGGGAAAGCATATGTCTGCAAACTaGATGCGGAGACCACCTGGATGGGCTTGTGGTTTC +
Preference number: 6 (lower is better)
Translates to: SGYQRGKHMSAN*MRRPPGWACGF
Trigger: GAAACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGACATATGCTTTCCCCTTTGATATCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 72 bp TTCCTCAGGAAGCCCAGGTCTATGTCTTCCACTGTGTaGAGAATGCTATTAAAGGTGAGGCTGCAGTTCTGG +
Preference number: 6 (lower is better)
Translates to: FLRKPRSMSSTV*RMLLKVRLQFW
Trigger: CCAGAACTGCAGCCTCACCTTTAATAGCATTCTGCACACAGTGGAAGACATAGACCTGGGCTTCCTGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 72 bp TGCAAACTGCATGCGGAGACCACCTGGATGGGCTTGTaGTTTCTAATGGTGCCAGAAGAGTTCACGTATACA +
Preference number: 6 (lower is better)
Translates to: CKLHAETTWMGL*FLMVPEEFTYT
Trigger: TGTATACGTGAACTCTTCTGGCACCATTAGAAACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 72 bp AAAGCATATGTCTGCAAACTGCATGCGGAGACCACCTaGATGGGCTTGTGGTTTCTAATGGTGCCAGAAGAG +
Preference number: 6 (lower is better)
Translates to: KAYVCKLHAETT*MGLWFLMVPEE
Trigger: CTCTTCTGGCACCATTAGAAACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGACATATGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CAA 90 bp GATGATATCAGGGGCCCAGAGGGCACTGAGAGGGAGAGAGATCTCTaGAATCTCATCGAACAGACTAGAGTTCCAGGACAAAAACTCATC +
Preference number: 6 (lower is better)
Translates to: DDIRGPEGTERERDL*NLIEQTRVPGQKLI
Trigger: GATGAGTTTTTGTCCTGGAACTCTAGTCTGTTCGATGAGATTCAAGAGATCTCTCTCCCTCTCAGTGCCCTCTGGGCCCCTGATATCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS GCA 72 bp GATATCAAAGGGGAAAGCATATGTCTGCAAACTGCATaGGGAGACCACCTGGATGGGCTTGTGGTTTCTAAT +
Preference number: 6 (lower is better)
Translates to: DIKGESICLQTA*GDHLDGLVVSN
Trigger: ATTAGAAACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGACATATGCTTTCCCCTTTGATATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS TCA 72 bp CAAACCTCTCGGTACCACACGCTTGTCTTTAATTTTTaGTTCTGCACATCCACATCCAATACAGCATGGACG +
Preference number: 6 (lower is better)
Translates to: QTSRYHTLVFNF*FCTSTSNTAWT
Trigger: CGTCCATGCTGTATTGGATGTGGATGTGCAGAATCAAAAATTAAAGACAAGCGTGTGGTACCGAGAGGTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CCA 72 bp GTGTGCAGAATGCTATTAAAGGTGAGGCTGCAGTTCTaGATATCAAAGGGGAAAGCATATGTCTGCAAACTG +
Preference number: 6 (lower is better)
Translates to: VCRMLLKVRLQF*ISKGKAYVCKL
Trigger: CAGTTTGCAGACATATGCTTTCCCCTTTGATATCCAGAACTGCAGCCTCACCTTTAATAGCATTCTGCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5
CDS CAA 72 bp AAAACTCATCGTTCCAAACCTCTCGGTACCACACGCTaGTCTTTAATTTTTGATTCTGCACATCCACATCCA +
Preference number: 6 (lower is better)
Translates to: KTHRSKPLGTTR*SLIFDSAHPHP
Trigger: TGGATGTGGATGTGCAGAATCAAAAATTAAAGACAAGCGTGTGGTACCGAGAGGTTTGGAACGATGAGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008734.5