RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HTR2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026228

Ensembl transcript IDs: ENSMUST00000027431.7, ENSMUST00000155077.2

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp ACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTaGCGCGTGCGTCCTGCTCATCACCTCTCTCAGATGAGGGCGGCC +
Preference number: 2 (lower is better)
Translates to: TQERVGFSFTLYLSM*RVRPAHHLSQMRAA
Trigger: GGCCGCCCTCATCTGAGAGAGGTGATGAGCAGGACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp CTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTCATCACCTCTCTCAGATGAGGAGGAGAGCTGCCCAGTaGACTGTATGCCCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: LYLSMLRVRPAHHLSQMRRRAAQ*TVCPCP
Trigger: GGGACAGGGGCATACAGTGCACTGGGCAGCTCTCCT...CCTCATCTGAGAGAGGTGATGAGCAGGACGCACGCGCAACATGGAAAGGTACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp AGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTAGGACACAGGGCCAGTaGGAGGGGCCATATAGCCTC +
Preference number: 4 (lower is better)
Translates to: RVGFSFTLYLSMLRVRPARTQGQ*EGPYSL
Trigger: GAGGCTATATGGCCCCTCCCACTGGCCCTGTGTCCT...AGCAGGACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp ACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGACTTCGGAGCCTCATTaGGCTCTGGTACATGGCAGG +
Preference number: 4 (lower is better)
Translates to: TQERVGFSFTLYLSMLRVTSEPH*ALVHGR
Trigger: CCTGCCATGTACCAGAGCCCAATGAGGCTCCGAAGT...CACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR TCA 90 bp CAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTCACCGTGTTAGGCGTTaGGGTGGCTTATTTTTGACC +
Preference number: 4 (lower is better)
Translates to: QERVGFSFTLYLSMLRVRHRVRR*GGLFLT
Trigger: GGTCAAAAATAAGCCACCTCAACGCCTAACACGGTG...ACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp CAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTGGATGTTCCCACCAATaGTGGGTATTATCACCGCGA +
Preference number: 4 (lower is better)
Translates to: QERVGFSFTLYLSMLRVRGCSHQ*WVLSPR
Trigger: TCGCGGTGATAATACCCACCATTGGTGGGAACATCC...ACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp ATGTTGCGCGTGCGTCCTGCTCATCACCTCTCTCAGATGAGGGCGGCCCGTTCTACAGGTGACATTGTGTaGATTAATCACATCAGTCTC +
Preference number: 4 (lower is better)
Translates to: MLRVRPAHHLSQMRAARSTGDIV*INHISL
Trigger: GAGACTGATGTGATTAATCCACACAATGTCACCTGT...AGAACGGGCCGCCCTCATCTGAGAGAGGTGATGAGCAGGACGCACGCGCAACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp TCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTCATCACCTCTCTCAGATGAGCCCTTAGGAAAACTGTaGGCACAGTCCACCGTGTTA +
Preference number: 4 (lower is better)
Translates to: SVPFHVARASCSSPLSDEPLGKL*AQSTVL
Trigger: TAACACGGTGGACTGTGCCCACAGTTTTCCTAAGGG...CTCATCTGAGAGAGGTGATGAGCAGGACGCACGCGCAACATGGAAAGGTACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR TCA 90 bp CAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTTGGCACAGAGATGCATaGTGGAGGCAGTTGAAAAGA +
Preference number: 4 (lower is better)
Translates to: QERVGFSFTLYLSMLRVRWHRDA*WRQLKR
Trigger: TCTTTTCAACTGCCTCCATCATGCATCTCTGTGCCA...ACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp TCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTCATCACCTCTCTCAGATGAGTGTCCCTCCACAGTCTaGTTCATTTCCTCTGCTACT +
Preference number: 4 (lower is better)
Translates to: SVPFHVARASCSSPLSDECPSTV*FISSAT
Trigger: AGTAGCAGAGGAAATGAAGCAGACTGTGGAGGGACA...CTCATCTGAGAGAGGTGATGAGCAGGACGCACGCGCAACATGGAAAGGTACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR TCA 90 bp GGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTCAATGATTGATGAGGACTaGATGGTTGAACTTCGGAGC +
Preference number: 4 (lower is better)
Translates to: GGVFIHSVPFHVARASCSMIDED*MVELRS
Trigger: GCTCCGAAGTTCAACCATTCAGTCCTCATCAATCAT...TGAGCAGGACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp GGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTCATCACCGCCTTCGAGGCTCTCTaGTCATTAGAAATGGTTTGG +
Preference number: 4 (lower is better)
Translates to: GFHSLCTFPCCACVLLITAFEAL*SLEMVW
Trigger: CCAAACCATTTCTAATGAGCAGAGAGCCTCGAAGGC...GGTGATGAGCAGGACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR TCA 90 bp ACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCCTGAATTGGCTTTTTaGTGGCTATATAGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: TQERVGFSFTLYLSMLRVPELAF*WLYSGP
Trigger: TGGACCGCTATATAGCCATCAAAAAGCCAATTCAGG...CACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR TCA 90 bp TGGACAGCCTTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTAAGAATTTTATCCCTGTaGGACCCATCCAGCATTGCC +
Preference number: 4 (lower is better)
Translates to: WTALVLHSGEGGVFIHSVRILSL*DPSSIA
Trigger: GGCAATGCTGGATGGGTCTCACAGGGATAAAATTCT...TACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAAGGCTGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp TGGACAGCCTTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTATGTTCCCACCAATGGTaGGTATTATCACCGCGAGTA +
Preference number: 4 (lower is better)
Translates to: WTALVLHSGEGGVFIHSVCSHQW*VLSPRV
Trigger: TACTCGCGGTGATAATACCCACCATTGGTGGGAACA...TACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAAGGCTGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR TCA 90 bp TGGACAGCCTTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTAGAAGAAAGCAGCCAGTaGCCCAAAGACCATAAAACT +
Preference number: 4 (lower is better)
Translates to: WTALVLHSGEGGVFIHSVEESSQ*PKDHKT
Trigger: AGTTTTATGGTCTTTGGGTCACTGGCTGCTTTCTTC...TACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAAGGCTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp CAGCCTTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTGTAATCTTGATGAATaGAGTAGCCCGGGAGTTGCA +
Preference number: 4 (lower is better)
Translates to: QPWYFTQERVGFSFTLYLCNLDE*SSPGVA
Trigger: TGCAACTCCCGGGCTACTGCATTCATCAAGATTACA...AAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAAGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp ACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGAAATGGCACAGAGATaGATGATGGAGGCAGTTGAA +
Preference number: 4 (lower is better)
Translates to: TSLRRGWGFHSLCTFPCCEMAQR*MMEAVE
Trigger: TTCAACTGCCTCCATCATGCATCTCTGTGCCATTTC...GCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp GGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTCATCACCTGTGCTCAGAAGTTGTaGTTTGTTCAGACATTTTAT +
Preference number: 4 (lower is better)
Translates to: GFHSLCTFPCCACVLLITCAQKL*FVQTFY
Trigger: ATAAAATGTCTGAACAAAGCACAACTTCTGAGCACA...GGTGATGAGCAGGACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp GGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTCATCACCTCATTAGAAATGGTTTaGGCTGATCTTTTTCCAACT +
Preference number: 4 (lower is better)
Translates to: GFHSLCTFPCCACVLLITSLEMV*ADLFPT
Trigger: AGTTGGAAAAAGATCAGCCCAAACCATTTCTAATGA...GGTGATGAGCAGGACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp TTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTCTTCTGTAAAATGTaGTCAGAAGTTGTGCTTTGT +
Preference number: 4 (lower is better)
Translates to: LVLHSGEGGVFIHSVPFHVFCKM*SEVVLC
Trigger: ACAAAGCACAACTTCTGAGCACATTTTACAGAAGAC...ATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp TTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATCTGATTGGCCTGAATTaGCTTTTTGATGGCTATATA +
Preference number: 4 (lower is better)
Translates to: LVLHSGEGGVFIHSVPFHLIGLN*LFDGYI
Trigger: TATATAGCCATCAAAAAGCCAATTCAGGCCAATCAG...ATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR TCA 90 bp GTATTTGAAAACCAGAGTAGAGATTGCGTTTGTTTGAAGCCATCAGATCTACTTGGTACATGGCAGGGTTaGTCCCATTTCGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: VFENQSRDCVCLKPSDLLGTWQG*SHFEFH
Trigger: ATGGAATTCGAAATGGGATCAACCCTGCCATGTACC...AAGTAGATCTGATGGCTTCAAACAAACGCAATCTCTACTCTGGTTTTCAAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CCA 90 bp GTATTTGAAAACCAGAGTAGAGATTGCGTTTGTTTGAAGCCATCAGATCTACTTTTGATGAGGACTGAATaGTTGAACTTCGGAGCCTCA +
Preference number: 4 (lower is better)
Translates to: VFENQSRDCVCLKPSDLLLMRTE*LNFGAS
Trigger: TGAGGCTCCGAAGTTCAACCATTCAGTCCTCATCAA...AAGTAGATCTGATGGCTTCAAACAAACGCAATCTCTACTCTGGTTTTCAAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR GCA 90 bp GTATTTGAAAACCAGAGTAGAGATTGCGTTTGTTTGAAGCCATCAGATCTACTTGATGTACCTGCCAAATaGTTCCCGAAATGTCTTATT +
Preference number: 4 (lower is better)
Translates to: VFENQSRDCVCLKPSDLLDVPAK*FPKCLI
Trigger: AATAAGACATTTCGGGAAGCATTTGGCAGGTACATC...AAGTAGATCTGATGGCTTCAAACAAACGCAATCTCTACTCTGGTTTTCAAATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CAA 90 bp ATGTTGCGCGTGCGTCCTGCTCATCACCTCTCTCAGATGAGGGCGGCCCGTTCTGAGACCCATCCAGCATaGCCACCTTTTCTGGTGATG +
Preference number: 5 (lower is better)
Translates to: MLRVRPAHHLSQMRAARSETHPA*PPFLVM
Trigger: CATCACCAGAAAAGGTGGCAATGCTGGATGGGTCTC...AGAACGGGCCGCCCTCATCTGAGAGAGGTGATGAGCAGGACGCACGCGCAACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS GCA 90 bp GTTCCCACCAATGGTGGGTATTATCACCGCGAGTATCAGGAGAGCTaGCCAGTGCACTGTATGCCCCTGTCCCTCCACAGTCTGCTTCAT +
Preference number: 5 (lower is better)
Translates to: VPTNGGYYHREYQES*PVHCMPLSLHSLLH
Trigger: ATGAAGCAGACTGTGGAGGGACAGGGGCATACAGTGCACTGGGCAGCTCTCCTGATACTCGCGGTGATAATACCCACCATTGGTGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS GCA 90 bp GGTATTATCACCGCGAGTATCAGGAGAGCTGCCCAGTGCACTGTATaGCCCTGTCCCTCCACAGTCTGCTTCATTTCCTCTGCTACTGAG +
Preference number: 5 (lower is better)
Translates to: GIITASIRRAAQCTV*PCPSTVCFISSATE
Trigger: CTCAGTAGCAGAGGAAATGAAGCAGACTGTGGAGGGACAGGGGCATACAGTGCACTGGGCAGCTCTCCTGATACTCGCGGTGATAATACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS GCA 90 bp CCAATGGTGGGTATTATCACCGCGAGTATCAGGAGAGCTGCCCAGTaGACTGTATGCCCCTGTCCCTCCACAGTCTGCTTCATTTCCTCT +
Preference number: 5 (lower is better)
Translates to: PMVGIITASIRRAAQ*TVCPCPSTVCFISS
Trigger: AGAGGAAATGAAGCAGACTGTGGAGGGACAGGGGCATACAGTGCACTGGGCAGCTCTCCTGATACTCGCGGTGATAATACCCACCATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 90 bp TCTCCAGTGCAACAGCCAGAATCACAAGGATGTTCCCACCAATGGTaGGTATTATCACCGCGAGTATCAGGAGAGCTGCCCAGTGCACTG +
Preference number: 5 (lower is better)
Translates to: SPVQQPESQGCSHQW*VLSPRVSGELPSAL
Trigger: CAGTGCACTGGGCAGCTCTCCTGATACTCGCGGTGATAATACCCACCATTGGTGGGAACATCCTTGTGATTCTGGCTGTTGCACTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 90 bp TTTTCTCCAGTGCAACAGCCAGAATCACAAGGATGTTCCCACCAATaGTGGGTATTATCACCGCGAGTATCAGGAGAGCTGCCCAGTGCA +
Preference number: 5 (lower is better)
Translates to: FSPVQQPESQGCSHQ*WVLSPRVSGELPSA
Trigger: TGCACTGGGCAGCTCTCCTGATACTCGCGGTGATAATACCCACCATTGGTGGGAACATCCTTGTGATTCTGGCTGTTGCACTGGAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CAA 90 bp GCTGGACAGCCTTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGATGAGGACTGAATGGTaGAACTTCGGAGCCTCATTG +
Preference number: 5 (lower is better)
Translates to: AGQPWYFTQERVGFSFTLMRTEW*NFGASL
Trigger: CAATGAGGCTCCGAAGTTCAACCATTCAGTCCTCAT...CAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAAGGCTGTCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CAA 90 bp AGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCGCGTGCGTCCTGCTGGATGGCGATGCCTATaGAAATTAACCATACCACTG +
Preference number: 5 (lower is better)
Translates to: RVGFSFTLYLSMLRVRPAGWRCL*KLTIPL
Trigger: CAGTGGTATGGTTAATTTCAATAGGCATCGCCATCC...AGCAGGACGCACGCGCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS TCA 90 bp TCGTTTTCAGTGAGAAGGGTATCGAGGAGGATGATTGATGAGGACTaGATGGTTGAACTTCGGAGCCTCATTGGGCTCTGGTACATGGCA +
Preference number: 5 (lower is better)
Translates to: SFSVRRVSRRMIDED*MVELRSLIGLWYMA
Trigger: TGCCATGTACCAGAGCCCAATGAGGCTCCGAAGTTCAACCATTCAGTCCTCATCAATCATCCTCCTCGATACCCTTCTCACTGAAAACGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 90 bp ACGACTCCAAGGGCCTTCGAGGCTCTCTGCTCATTAGAAATGGTTTaGGCTGATCTTTTTCCAACTGAGGACATTCTTCGCATAAGTGTC +
Preference number: 5 (lower is better)
Translates to: TTPRAFEALCSLEMV*ADLFPTEDILRISV
Trigger: GACACTTATGCGAAGAATGTCCTCAGTTGGAAAAAGATCAGCCCAAACCATTTCTAATGAGCAGAGAGCCTCGAAGGCCCTTGGAGTCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CAA 90 bp ACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCCATACCACTGTAATCTaGATGAATGCAGTAGCCCGG +
Preference number: 5 (lower is better)
Translates to: TSLRRGWGFHSLCTFPCCHTTVI*MNAVAR
Trigger: CCGGGCTACTGCATTCATCAAGATTACAGTGGTATG...GCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CAA 90 bp TGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGGTGCTTTTACTGACTTaGTGGCTCGGTAATTGCAGG +
Preference number: 5 (lower is better)
Translates to: WYFTQERVGFSFTLYLSMVLLLT*WLGNCR
Trigger: CCTGCAATTACCGAGCCACAAAGTCAGTAAAAGCAC...CATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS TCA 90 bp CCGAGGAAACGTAGCCTATCCACACAAATATCTCCAGGAGTGTTTTaGGAGTGGTCTGATTGCAGGAATCACACAGAGCTAAAGTTAGAT +
Preference number: 5 (lower is better)
Translates to: PRKRSLSTQISPGVF*EWSDCRNHTELKLD
Trigger: ATCTAACTTTAGCTCTGTGTGATTCCTGCAATCAGACCACTCTCAAAACACTCCTGGAGATATTTGTGTGGATAGGCTACGTTTCCTCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 90 bp AAAACTGCCAAAGCGGTCCTTTGTCAGCTCACAGGTGACATTGTGTaGATTAATCACATCAGTCTCGATTCCTTTAATAGGGACTGGGAT +
Preference number: 5 (lower is better)
Translates to: KTAKAVLCQLTGDIV*INHISLDSFNRDWD
Trigger: ATCCCAGTCCCTATTAAAGGAATCGAGACTGATGTGATTAATCCACACAATGTCACCTGTGAGCTGACAAAGGACCGCTTTGGCAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027431.7
ENSMUST00000155077.2
CDS-3UTR CAA 90 bp TTGGTACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATAGCTCACAGGTGACATaGTGTGGATTAATCACATCA +
Preference number: 5 (lower is better)
Translates to: LVLHSGEGGVFIHSVPFHSSQVT*CGLITS
Trigger: TGATGTGATTAATCCACACAATGTCACCTGTGAGCT...ATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGTACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS TCA 90 bp GCTACTGAGTCTGTCTCTAATCCAGAACGGTTAGTCAGGATCAGGTaGTCACATGTCTTCTGTAAAATGTGCTCAGAAGTTGTGCTTTGT +
Preference number: 5 (lower is better)
Translates to: ATESVSNPERLVRIR*SHVFCKMCSEVVLC
Trigger: ACAAAGCACAACTTCTGAGCACATTTTACAGAAGACATGTGATCACCTGATCCTGACTAACCGTTCTGGATTAGAGACAGACTCAGTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CAA 90 bp ACTTCACTCAGGAGAGGGTGGGGTTTTCATTCACTCTGTACCTTTCCATGTTGCAAATGTGCTCAGAAGTaGTGCTTTGTTCAGACATTT +
Preference number: 5 (lower is better)
Translates to: TSLRRGWGFHSLCTFPCCKCAQK*CFVQTF
Trigger: AAATGTCTGAACAAAGCACAACTTCTGAGCACATTT...GCAACATGGAAAGGTACAGAGTGAATGAAAACCCCACCCTCTCCTGAGTGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS-3UTR CAA 90 bp GTATTTGAAAACCAGAGTAGAGATTGCGTTTGTTTGAAGCCATCAGATCTACTTTGGTACATGGCAGGGTaGATCCCATTTCGAATTCCA +
Preference number: 5 (lower is better)
Translates to: VFENQSRDCVCLKPSDLLWYMAG*IPFRIP
Trigger: TGGAATTCGAAATGGGATCAACCCTGCCATGTACCA...AAGTAGATCTGATGGCTTCAAACAAACGCAATCTCTACTCTGGTTTTCAAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS GCA 72 bp ACCGCGAGTATCAGGAGAGCTGCCCAGTGCACTGTATaGCCCTGTCCCTCCACAGTCTGCTTCATTTCCTCT +
Preference number: 6 (lower is better)
Translates to: TASIRRAAQCTV*PCPSTVCFISS
Trigger: AGAGGAAATGAAGCAGACTGTGGAGGGACAGGGGCATACAGTGCACTGGGCAGCTCTCCTGATACTCGCGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS GCA 72 bp GGTATTATCACCGCGAGTATCAGGAGAGCTGCCCAGTaGACTGTATGCCCCTGTCCCTCCACAGTCTGCTTC +
Preference number: 6 (lower is better)
Translates to: GIITASIRRAAQ*TVCPCPSTVCF
Trigger: GAAGCAGACTGTGGAGGGACAGGGGCATACAGTGCACTGGGCAGCTCTCCTGATACTCGCGGTGATAATACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS GCA 72 bp GCCCAGTGCACTGTATGCCCCTGTCCCTCCACAGTCTaGTTCATTTCCTCTGCTACTGAGTCTGTCTCTAAT +
Preference number: 6 (lower is better)
Translates to: AQCTVCPCPSTV*FISSATESVSN
Trigger: ATTAGAGACAGACTCAGTAGCAGAGGAAATGAAGCAGACTGTGGAGGGACAGGGGCATACAGTGCACTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 72 bp ATAGGGACTGGGATGGCGATGCCAGAGCTGGCATTCTaGCCATATGGAAATAGAGGCATTCCCCACATACCT +
Preference number: 6 (lower is better)
Translates to: IGTGMAMPELAF*PYGNRGIPHIP
Trigger: AGGTATGTGGGGAATGCCTCTATTTCCATATGGCCAGAATGCCAGCTCTGGCATCGCCATCCCAGTCCCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155077.2
CDS TCA 72 bp CCCGGGAGTTGCACTGATTGGCCTGAATTGGCTTTTTaGTGGCTATATAGCGGTCCAGGGAAATGGCACAGA +
Preference number: 6 (lower is better)
Translates to: PGSCTDWPELAF*WLYSGPGKWHR
Trigger: TCTGTGCCATTTCCCTGGACCGCTATATAGCCATCAAAAAGCCAATTCAGGCCAATCAGTGCAACTCCCGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027431.7
ENSMUST00000155077.2
CDS TCA 72 bp GTGAGAAGGGTATCGAGGAGGATGATTGATGAGGACTaGATGGTTGAACTTCGGAGCCTCATTGGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: VRRVSRRMIDED*MVELRSLIGLW
Trigger: CCAGAGCCCAATGAGGCTCCGAAGTTCAACCATTCAGTCCTCATCAATCATCCTCCTCGATACCCTTCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 72 bp GTGATGAAAAGGATGAGTCTTCCCTTAGGAAAACTGTaGGCACAGTCCACCGTGTTAGGCGTTGAGGTGGCT +
Preference number: 6 (lower is better)
Translates to: VMKRMSLPLGKL*AQSTVLGVEVA
Trigger: AGCCACCTCAACGCCTAACACGGTGGACTGTGCCCACAGTTTTCCTAAGGGAAGACTCATCCTTTTCATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS TCA 72 bp TACCATGATGGTGAGAGGTGCGAAGAAAGCAGCCAGTaGCCCAAAGACCATAAAACTGCCAAAGCGGTCCTT +
Preference number: 6 (lower is better)
Translates to: YHDGERCEESSQ*PKDHKTAKAVL
Trigger: AAGGACCGCTTTGGCAGTTTTATGGTCTTTGGGTCACTGGCTGCTTTCTTCGCACCTCTCACCATCATGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 72 bp TGCAGTAGCCCGGGAGTTGCACTGATTGGCCTGAATTaGCTTTTTGATGGCTATATAGCGGTCCAGGGAAAT +
Preference number: 6 (lower is better)
Translates to: CSSPGVALIGLN*LFDGYIAVQGN
Trigger: ATTTCCCTGGACCGCTATATAGCCATCAAAAAGCCAATTCAGGCCAATCAGTGCAACTCCCGGGCTACTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027431.7
ENSMUST00000155077.2
CDS CCA 72 bp ATTAATCACATCAGTCTCGATTCCTTTAATAGGGACTaGGATGGCGATGCCAGAGCTGGCATTCTGGCCATA +
Preference number: 6 (lower is better)
Translates to: INHISLDSFNRD*DGDARAGILAI
Trigger: TATGGCCAGAATGCCAGCTCTGGCATCGCCATCCCAGTCCCTATTAAAGGAATCGAGACTGATGTGATTAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155077.2
CDS TCA 72 bp CGTAGCCTATCCACACAAATATCTCCAGGAGTGTTTTaGGAGTGGTCTGATTGCAGGAATCACACAGAGCTA +
Preference number: 6 (lower is better)
Translates to: RSLSTQISPGVF*EWSDCRNHTEL
Trigger: TAGCTCTGTGTGATTCCTGCAATCAGACCACTCTCAAAACACTCCTGGAGATATTTGTGTGGATAGGCTACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CAA 72 bp CTGCCAAAGCGGTCCTTTGTCAGCTCACAGGTGACATaGTGTGGATTAATCACATCAGTCTCGATTCCTTTA +
Preference number: 6 (lower is better)
Translates to: LPKRSFVSSQVT*CGLITSVSIPL
Trigger: TAAAGGAATCGAGACTGATGTGATTAATCCACACAATGTCACCTGTGAGCTGACAAAGGACCGCTTTGGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027431.7
ENSMUST00000155077.2
CDS CAA 90 bp ACCATAAAACTGCCAAAGCGGTCCTTTGTCAGCTCACAGGTGACATaGTGTGGATTAATCACATCAGTCTCGATTCCTTTAATAGGGACT +
Preference number: 6 (lower is better)
Translates to: TIKLPKRSFVSSQVT*CGLITSVSIPLIGT
Trigger: AGTCCCTATTAAAGGAATCGAGACTGATGTGATTAATCCACACAATGTCACCTGTGAGCTGACAAAGGACCGCTTTGGCAGTTTTATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027431.7
ENSMUST00000155077.2
CDS GCA 72 bp TGTGGCTCGGTAATTGCAGGTGATGTACCTGCCAAATaGTTCCCGAAATGTCTTATTGAAGAGTGTATAGAT +
Preference number: 6 (lower is better)
Translates to: CGSVIAGDVPAK*FPKCLIEECID
Trigger: ATCTATACACTCTTCAATAAGACATTTCGGGAAGCATTTGGCAGGTACATCACCTGCAATTACCGAGCCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS CCA 72 bp AAAGCGGTCCTTTGTCAGCTCACAGGTGACATTGTGTaGATTAATCACATCAGTCTCGATTCCTTTAATAGG +
Preference number: 6 (lower is better)
Translates to: KAVLCQLTGDIV*INHISLDSFNR
Trigger: CCTATTAAAGGAATCGAGACTGATGTGATTAATCCACACAATGTCACCTGTGAGCTGACAAAGGACCGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027431.7
ENSMUST00000155077.2
CDS TCA 72 bp TCTGTCTCTAATCCAGAACGGTTAGTCAGGATCAGGTaGTCACATGTCTTCTGTAAAATGTGCTCAGAAGTT +
Preference number: 6 (lower is better)
Translates to: SVSNPERLVRIR*SHVFCKMCSEV
Trigger: AACTTCTGAGCACATTTTACAGAAGACATGTGATCACCTGATCCTGACTAACCGTTCTGGATTAGAGACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS TCA 72 bp ACAAAGTGTACTGGAAAACTTCCTAAGTGCTTTTACTaGCTTTGTGGCTCGGTAATTGCAGGTGATGTACCT +
Preference number: 6 (lower is better)
Translates to: TKCTGKLPKCFY*LCGSVIAGDVP
Trigger: AGGTACATCACCTGCAATTACCGAGCCACAAAGTCAGTAAAAGCACTTAGGAAGTTTTCCAGTACACTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7
CDS TCA 72 bp CACACAAATATCTCCAGGAGTGTTTTGAGAGTGGTCTaGTTGCAGGAATCACACAGAGCTAAAGTTAGATTT +
Preference number: 6 (lower is better)
Translates to: HTNISRSVLRVV*LQESHRAKVRF
Trigger: AAATCTAACTTTAGCTCTGTGTGATTCCTGCAATCAGACCACTCTCAAAACACTCCTGGAGATATTTGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027431.7