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Pregenerated sensors for HTR1F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050783

Ensembl transcript IDs: ENSMUST00000063076.6

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGAGCTTCATATCTTCTCTGCTAAGGCTAAATAGGAGCTGCTGTTaGTATATCTCCACCTTTGTAGTGGAGAAGATGGAGAAGGGGCAA +
Preference number: 1 (lower is better)
Translates to: LSFISSLLRLNRSCC*YISTFVVEKMEKGQ
Trigger: TTGCCCCTTCTCCATCTTCTCCACTACAAAGGTGGAGATATAGCAACAGCAGCTCCTATTTAGCCTTAGCAGAGAAGATATGAAGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
3UTR GCA 90 bp AAGCCGCTGAGCTTCATATCTTCTCTGCTAAGGCTAAATAGGAGCTaGTGTTGCTATATCTCCACCTTTGTAGTGGAGAAGATGGAGAAG +
Preference number: 1 (lower is better)
Translates to: KPLSFISSLLRLNRS*CCYISTFVVEKMEK
Trigger: CTTCTCCATCTTCTCCACTACAAAGGTGGAGATATAGCAACAGCAGCTCCTATTTAGCCTTAGCAGAGAAGATATGAAGCTCAGCGGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
3UTR GCA 72 bp AGCTTCATATCTTCTCTGCTAAGGCTAAATAGGAGCTaGTGTTGCTATATCTCCACCTTTGTAGTGGAGAAG +
Preference number: 3 (lower is better)
Translates to: SFISSLLRLNRS*CCYISTFVVEK
Trigger: CTTCTCCACTACAAAGGTGGAGATATAGCAACAGCAGCTCCTATTTAGCCTTAGCAGAGAAGATATGAAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 90 bp CATGATGCCGGCATGCCTGGGAGTCCTCTTCCTGGCGTATTCAACTaGATCTGTGATGGCGCGGTACCTATCCAAGGCTATAGCCGACAG +
Preference number: 5 (lower is better)
Translates to: HDAGMPGSPLPGVFN*ICDGAVPIQGYSRQ
Trigger: CTGTCGGCTATAGCCTTGGATAGGTACCGCGCCATCACAGATGCAGTTGAATACGCCAGGAAGAGGACTCCCAGGCATGCCGGCATCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS TCA 90 bp GTGGAGACCAGTTTAATGCTCTTCTCACCGCTCTCCAAGAAGACTTaGCCGTTCAGCTCCTCCTTTATCATCCGACTCGCTTGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: VETSLMLFSPLSKKT*PFSSSFIIRLACLL
Trigger: CAAGAGACAAGCGAGTCGGATGATAAAGGAGGAGCTGAACGGTCAAGTCTTCTTGGAGAGCGGTGAGAAGAGCATTAAACTGGTCTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS TCA 90 bp CAAGATCAATCCCAGGGTAGTGGCTGCTTTGCGTTCTCTGGTGCCTaGGATTTTCTGTCTTCTCCAAGATTTCTCATGCTTCAGTTCCGA +
Preference number: 5 (lower is better)
Translates to: QDQSQGSGCFAFSGA*DFLSSPRFLMLQFR
Trigger: TCGGAACTGAAGCATGAGAAATCTTGGAGAAGACAGAAAATCTCAGGCACCAGAGAACGCAAAGCAGCCACTACCCTGGGATTGATCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 90 bp TCCAAGATTTCTCATGCTTCAGTTCCGATCTGGGACTTTTCACGGTaGTGTGAATTCTATCAAAGTCCGTTGATGGATCGGACAAGGATT +
Preference number: 5 (lower is better)
Translates to: SKISHASVPIWDFSR*CEFYQSPLMDRTRI
Trigger: AATCCTTGTCCGATCCATCAACGGACTTTGATAGAATTCACAGCACCGTGAAAAGTCCCAGATCGGAACTGAAGCATGAGAAATCTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS TCA 90 bp GATTTCTCATGCTTCAGTTCCGATCTGGGACTTTTCACGGTGCTGTaGATTCTATCAAAGTCCGTTGATGGATCGGACAAGGATTTTTCT +
Preference number: 5 (lower is better)
Translates to: DFSCFSSDLGLFTVL*ILSKSVDGSDKDFS
Trigger: AGAAAAATCCTTGTCCGATCCATCAACGGACTTTGATAGAATTCACAGCACCGTGAAAAGTCCCAGATCGGAACTGAAGCATGAGAAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 90 bp CTTTATCATCCGACTCGCTTGTCTCTTGTGGTACAGTGTCCTTGCTaGTCTGTATATTTTGTAGTAGAGGATCAATATCAATACAAGCGG +
Preference number: 5 (lower is better)
Translates to: LYHPTRLSLVVQCPC*SVYFVVEDQYQYKR
Trigger: CCGCTTGTATTGATATTGATCCTCTACTACAAAATATACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATGATAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 90 bp CTCCTTTATCATCCGACTCGCTTGTCTCTTGTGGTACAGTGTCCTTaGTGCTCTGTATATTTTGTAGTAGAGGATCAATATCAATACAAG +
Preference number: 5 (lower is better)
Translates to: LLYHPTRLSLVVQCP*CSVYFVVEDQYQYK
Trigger: CTTGTATTGATATTGATCCTCTACTACAAAATATACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATGATAAAGGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 72 bp GGCATGCCTGGGAGTCCTCTTCCTGGCGTATTCAACTaGATCTGTGATGGCGCGGTACCTATCCAAGGCTAT +
Preference number: 6 (lower is better)
Translates to: GMPGSPLPGVFN*ICDGAVPIQGY
Trigger: ATAGCCTTGGATAGGTACCGCGCCATCACAGATGCAGTTGAATACGCCAGGAAGAGGACTCCCAGGCATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 90 bp TGGTGCAGCTTCCGAGTCACAATGATCGCAGCGATCACGAGGGAGTaGATGGTGGTTGTCATCAATGCCAGCCCAGACAGAGTGAGGGAT +
Preference number: 6 (lower is better)
Translates to: WCSFRVTMIAAITRE*MVVVINASPDRVRD
Trigger: ATCCCTCACTCTGTCTGGGCTGGCATTGATGACAACCACCATCAACTCCCTCGTGATCGCTGCGATCATTGTGACTCGGAAGCTGCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 72 bp GATATAACCCACACGATCGTGATCATGATGCCGGCATaGCTGGGAGTCCTCTTCCTGGCGTATTCAACTGCA +
Preference number: 6 (lower is better)
Translates to: DITHTIVIMMPA*LGVLFLAYSTA
Trigger: TGCAGTTGAATACGCCAGGAAGAGGACTCCCAGGCATGCCGGCATCATGATCACGATCGTGTGGGTTATATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 72 bp TTCCGAGTCACAATGATCGCAGCGATCACGAGGGAGTaGATGGTGGTTGTCATCAATGCCAGCCCAGACAGA +
Preference number: 6 (lower is better)
Translates to: FRVTMIAAITRE*MVVVINASPDR
Trigger: TCTGTCTGGGCTGGCATTGATGACAACCACCATCAACTCCCTCGTGATCGCTGCGATCATTGTGACTCGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 72 bp TTGACCGTTCAGCTCCTCCTTTATCATCCGACTCGCTaGTCTCTTGTGGTACAGTGTCCTTGCTGCTCTGTA +
Preference number: 6 (lower is better)
Translates to: LTVQLLLYHPTR*SLVVQCPCCSV
Trigger: TACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATGATAAAGGAGGAGCTGAACGGTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 90 bp TGTGGAGACCAGTTTAATGCTCTTCTCACCGCTCTCCAAGAAGACTaGACCGTTCAGCTCCTCCTTTATCATCCGACTCGCTTGTCTCTT +
Preference number: 6 (lower is better)
Translates to: CGDQFNALLTALQED*TVQLLLYHPTRLSL
Trigger: AAGAGACAAGCGAGTCGGATGATAAAGGAGGAGCTGAACGGTCAAGTCTTCTTGGAGAGCGGTGAGAAGAGCATTAAACTGGTCTCCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS TCA 72 bp AGTTTAATGCTCTTCTCACCGCTCTCCAAGAAGACTTaGCCGTTCAGCTCCTCCTTTATCATCCGACTCGCT +
Preference number: 6 (lower is better)
Translates to: SLMLFSPLSKKT*PFSSSFIIRLA
Trigger: AGCGAGTCGGATGATAAAGGAGGAGCTGAACGGTCAAGTCTTCTTGGAGAGCGGTGAGAAGAGCATTAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 72 bp TTGATGACACACTCATCATCACGGCTAGTTCCTTGGTaGCTCCAGAAGAGAGGAGGCATAGAGATGAACACA +
Preference number: 6 (lower is better)
Translates to: LMTHSSSRLVPW*LQKRGGIEMNT
Trigger: TGTGTTCATCTCTATGCCTCCTCTCTTCTGGAGGCACCAAGGAACTAGCCGTGATGATGAGTGTGTCATCAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CCA 72 bp TGTTTGATGACACACTCATCATCACGGCTAGTTCCTTaGTGCCTCCAGAAGAGAGGAGGCATAGAGATGAAC +
Preference number: 6 (lower is better)
Translates to: CLMTHSSSRLVP*CLQKRGGIEMN
Trigger: GTTCATCTCTATGCCTCCTCTCTTCTGGAGGCACCAAGGAACTAGCCGTGATGATGAGTGTGTCATCAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 72 bp AATGCCAGCCCAGACAGAGTGAGGGATACCAGAATTTaGGATGGCATTCGGTTTAACAGTTCCTCAGAGGTC +
Preference number: 6 (lower is better)
Translates to: NASPDRVRDTRI*DGIRFNSSSEV
Trigger: GACCTCTGAGGAACTGTTAAACCGAATGCCATCCAAAATTCTGGTATCCCTCACTCTGTCTGGGCTGGCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 90 bp GTTGTCATCAATGCCAGCCCAGACAGAGTGAGGGATACCAGAATTTaGGATGGCATTCGGTTTAACAGTTCCTCAGAGGTCAAGTTTTGG +
Preference number: 6 (lower is better)
Translates to: VVINASPDRVRDTRI*DGIRFNSSSEVKFW
Trigger: CCAAAACTTGACCTCTGAGGAACTGTTAAACCGAATGCCATCCAAAATTCTGGTATCCCTCACTCTGTCTGGGCTGGCATTGATGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 72 bp ATGTTTGATGACACACTCATCATCACGGCTAGTTCCTaGGTGCCTCCAGAAGAGAGGAGGCATAGAGATGAA +
Preference number: 6 (lower is better)
Translates to: MFDDTLIITASS*VPPEERRHRDE
Trigger: TTCATCTCTATGCCTCCTCTCTTCTGGAGGCACCAAGGAACTAGCCGTGATGATGAGTGTGTCATCAAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 90 bp CAAGAAGACTTGACCGTTCAGCTCCTCCTTTATCATCCGACTCGCTaGTCTCTTGTGGTACAGTGTCCTTGCTGCTCTGTATATTTTGTA +
Preference number: 6 (lower is better)
Translates to: QEDLTVQLLLYHPTR*SLVVQCPCCSVYFV
Trigger: TACAAAATATACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATGATAAAGGAGGAGCTGAACGGTCAAGTCTTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 72 bp GATGATGTCGACACTCAGCCAAATGTCACAGAGTACTaGTCCCATAATCCAGCTCTCTCTCACAATGTACAC +
Preference number: 6 (lower is better)
Translates to: DDVDTQPNVTEY*SHNPALSHNVH
Trigger: GTGTACATTGTGAGAGAGAGCTGGATTATGGGACAAGTACTCTGTGACATTTGGCTGAGTGTCGACATCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 72 bp TTCAGCTCCTCCTTTATCATCCGACTCGCTTGTCTCTaGTGGTACAGTGTCCTTGCTGCTCTGTATATTTTG +
Preference number: 6 (lower is better)
Translates to: FSSSFIIRLACL*WYSVLAALYIL
Trigger: CAAAATATACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATGATAAAGGAGGAGCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 90 bp CCGATCTGGGACTTTTCACGGTGCTGTGAATTCTATCAAAGTCCGTaGATGGATCGGACAAGGATTTTTCTAACATGTAGGATGTGGAGA +
Preference number: 6 (lower is better)
Translates to: PIWDFSRCCEFYQSP*MDRTRIFLTCRMWR
Trigger: TCTCCACATCCTACATGTTAGAAAAATCCTTGTCCGATCCATCAACGGACTTTGATAGAATTCACAGCACCGTGAAAAGTCCCAGATCGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS GCA 72 bp CATCCGACTCGCTTGTCTCTTGTGGTACAGTGTCCTTaGTGCTCTGTATATTTTGTAGTAGAGGATCAATAT +
Preference number: 6 (lower is better)
Translates to: HPTRLSLVVQCP*CSVYFVVEDQY
Trigger: ATATTGATCCTCTACTACAAAATATACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 72 bp TCATCCGACTCGCTTGTCTCTTGTGGTACAGTGTCCTaGCTGCTCTGTATATTTTGTAGTAGAGGATCAATA +
Preference number: 6 (lower is better)
Translates to: SSDSLVSCGTVS*LLCIFCSRGSI
Trigger: TATTGATCCTCTACTACAAAATATACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6
CDS CAA 90 bp CCTCCTTTATCATCCGACTCGCTTGTCTCTTGTGGTACAGTGTCCTaGCTGCTCTGTATATTTTGTAGTAGAGGATCAATATCAATACAA +
Preference number: 6 (lower is better)
Translates to: PPLSSDSLVSCGTVS*LLCIFCSRGSISIQ
Trigger: TTGTATTGATATTGATCCTCTACTACAAAATATACAGAGCAGCAAGGACACTGTACCACAAGAGACAAGCGAGTCGGATGATAAAGGAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063076.6