Pregenerated sensors for HTR1D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070687Ensembl transcript IDs: ENSMUST00000088677.5, ENSMUST00000117699.2, ENSMUST00000121571.8
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCTGCTGCCTCTTTCTGACTTTCTCTCCATCTACGCTGGGCCACTaGTACCACTTTCCTTATGGACAGCCAGGACCCAGTGGAAACAAT | + |
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Preference number: 1 (lower is better) Translates to: SCCLFLTFSPSTLGH*YHFPYGQPGPSGNN Trigger: ATTGTTTCCACTGGGTCCTGGCTGTCCATAAGGAAAGTGGTATCAGTGGCCCAGCGTAGATGGAGAGAAAGTCAGAAAGAGGCAGCAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR TCA 90 bp | GAGCTGATCTGGTCCCAAGTATACCTCTCTCCTGCTGCCTCTTTCTaGCTTTCTCTCCATCTACGCTGGGCCACTGATACCACTTTCCTT | + |
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Preference number: 1 (lower is better) Translates to: ELIWSQVYLSPAASF*LSLHLRWATDTTFL Trigger: AAGGAAAGTGGTATCAGTGGCCCAGCGTAGATGGAGAGAAAGTCAGAAAGAGGCAGCAGGAGAGAGGTATACTTGGGACCAGATCAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR TCA 90 bp | CTCACCTGGGTCCTACAGTTATATTTCTTCCAACCCAGAGAACCATaGGAATATTATGTTAAGGGATGCTGTCAGTCCTGTCTCCCCTTT | + |
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Preference number: 1 (lower is better) Translates to: LTWVLQLYFFQPREP*EYYVKGCCQSCLPF Trigger: AAAGGGGAGACAGGACTGACAGCATCCCTTAACATAATATTCTCATGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGACCCAGGTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR-3UTR CCA 90 bp | CACCTGGGTCCTACAGTTATATTTCTTCCAACCCAGAGAACCATGAGAATATTAGGGTCTGGAGGATGCTaGCAATCAAACACAGAACAA | + |
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Preference number: 2 (lower is better) Translates to: HLGPTVIFLPTQRTMRILGSGGC*QSNTEQ Trigger: TTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCC...TAATATTCTCATGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGACCCAGGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR CCA 72 bp | GAGACAGAGGGAAGAATGAAGGATGCAGAGCTGATCTaGTCCCAAGTATACCTCTCTCCTGCTGCCTCTTTC | + |
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Preference number: 3 (lower is better) Translates to: ETEGRMKDAELI*SQVYLSPAASF Trigger: GAAAGAGGCAGCAGGAGAGAGGTATACTTGGGACCAGATCAGCTCTGCATCCTTCATTCTTCCCTCTGTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR-3UTR CAA 90 bp | GTTTATTTGGTAACGCTCAACATCTTAAGAACTCCAAGGACAAGGGTTGTAAAATACCGGTCAGTCTTCTaGAGCGGCAGGATGGTGGGT | + |
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Preference number: 3 (lower is better) Translates to: VYLVTLNILRTPRTRVVKYRSVF*SGRMVG Trigger: ACCCACCATCCTGCCGCTCAAGAAGACTGACCGGTA...TTTTACAACCCTTGTCCTTGGAGTTCTTAAGATGTTGAGCGTTACCAAATAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR CCA 72 bp | CAACACAGTGACCTAGCTTTAGATGATTCAGGGGTCTaGAGGATGCTGGCAATCAAACACAGAACAAATCTA | + |
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Preference number: 3 (lower is better) Translates to: QHSDLALDDSGV*RMLAIKHRTNL Trigger: TAGATTTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCCCTGAATCATCTAAAGCTAGGTCACTGTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR TCA 72 bp | AGTGGAAACAATTCCTGGGTGTTATCTTCTAATCAATaGGCTCCAGGAGATGACAACCCCTCCTTTCTAACT | + |
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Preference number: 3 (lower is better) Translates to: SGNNSWVLSSNQ*APGDDNPSFLT Trigger: AGTTAGAAAGGAGGGGTTGTCATCTCCTGGAGCTCATTGATTAGAAGATAACACCCAGGAATTGTTTCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| 3UTR TCA 72 bp | GTCCTACAGTTATATTTCTTCCAACCCAGAGAACCATaGGAATATTATGTTAAGGGATGCTGTCAGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: VLQLYFFQPREP*EYYVKGCCQSC Trigger: ACAGGACTGACAGCATCCCTTAACATAATATTCTCATGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR GCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCCGCAATCATGGCTGCTaGGTGGCCTGCGGTTCGACG | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPRNHGC*VACGST Trigger: CGTCGAACCGCAGGCCACGCAGCAGCCATGATTGCG...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCTCTCCTCGTGAGCCGTaGCCTGCCGCCAGAAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPSPREP*PAARRV Trigger: CACTCTTCTGGCGGCAGGCCACGGCTCACGAGGAGA...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCCTGTTGGAGGCCTCCTaGGGAAGGCCTTCTAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPLLEAS*GRPSRD Trigger: GTCCCTAGAAGGCCTTCCTCAGGAGGCCTCCAACAG...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 57% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCAGGCCGTGCAGCACGTaGTGTCAGAAGACACCCAGA | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPRPCST*CQKTPR Trigger: TCTGGGTGTCTTCTGACATCACGTGCTGCACGGCCT...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCACTCCAGGGCATCGGTaGTGGCCCAGTATCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPTPGHR*WPSICP Trigger: TGGACAGATACTGGGCCATCACCGATGCCCTGGAGT...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCCCAACTGTGTGTGTGTaGCTCTCATGGAGGCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPPTVCV*LSWRLG Trigger: CCCCAGCCTCCATGAGAGCCACACACACACAGTTGG...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 56% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | AAAAACTCTGTAAAATCCCAGGTAGACCAGAAGGCCTTCCCTCCAAGCCTGCTACCACGAGCGAGATTCTaGGAGCCTGCAGGACCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KNSVKSQVDQKAFPPSLLPRARF*EPAGPL Trigger: CAGAGGTCCTGCAGGCTCTCAGAATCTCGCTCGTGG...TAGCAGGCTTGGAGGGAAGGCCTTCTGGTCTACCTGGGATTTTACAGAGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | GACAGAGGGAAGAATGAAGGATGCAGAGCTGATCTGGTCCCAAGTATACCTCTCAGGCCGTGCAGCACGTaGTGTCAGAAGACACCCAGA | + |
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Preference number: 4 (lower is better) Translates to: DRGKNEGCRADLVPSIPLRPCST*CQKTPR Trigger: TCTGGGTGTCTTCTGACATCACGTGCTGCACGGCCT...GAGAGGTATACTTGGGACCAGATCAGCTCTGCATCCTTCATTCTTCCCTCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | GACATTTTCTCACCTGGGTCCTACAGTTATATTTCTTCCAACCCAGAGAACCATTCGGACATCTCCTCGTaGGCCGTGGCCTGCCGCCAG | + |
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Preference number: 4 (lower is better) Translates to: DIFSPGSYSYISSNPENHSDISS*AVACRQ Trigger: CTGGCGGCAGGCCACGGCTCACGAGGAGATGTCCGA...ATGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGACCCAGGTGAGAAAATGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR CCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCATGTCACACAGGATCTaGCCAAAGTTCCAGGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPMSHRI*PKFQVR Trigger: CCGCACCTGGAACTTTGGCCAGATCCTGTGTGACAT...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| 3UTR CAA 72 bp | TTCAAAGCCTCGAGTGTCCCGTACCGGTCAGTCTTCTaGAGCGGCAGGATGGTGGGTTTTAACTTCGGAACA | + |
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Preference number: 4 (lower is better) Translates to: FKASSVPYRSVF*SGRMVGFNFGT Trigger: TGTTCCGAAGTTAAAACCCACCATCCTGCCGCTCAAGAAGACTGACCGGTACGGGACACTCGAGGCTTTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | AGGGGTCTGGAGGATGCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCTCGGACATCTCCTCGTaGGCCGTGGCCTGCCGCCAG | + |
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Preference number: 4 (lower is better) Translates to: RGLEDAGNQTQNKSINLSSDISS*AVACRQ Trigger: CTGGCGGCAGGCCACGGCTCACGAGGAGATGTCCGA...GCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCAATAACCTAGCCACGTaGAGAAGTCAAAGAGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPNNLAT*RSQRGP Trigger: CGGCCCTCTTTGACTTCTTCACGTGGCTAGGTTATT...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | GAGACAGAGGGAAGAATGAAGGATGCAGAGCTGATCTGGTCCCAAGTATACCTCCATTCAGGGATCTGTTaGAGGCCTCCTGAGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: ETEGRMKDAELIWSQVYLHSGIC*RPPEEG Trigger: GCCTTCCTCAGGAGGCCTCCAACAGATCCCTGAATG...GAGGTATACTTGGGACCAGATCAGCTCTGCATCCTTCATTCTTCCCTCTGTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | ATAGAGACAGAGGGAAGAATGAAGGATGCAGAGCTGATCTGGTCCCAAGTATACACTCCAGGGCATCGGTaGTGGCCCAGTATCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: IETEGRMKDAELIWSQVYTPGHR*WPSICP Trigger: TGGACAGATACTGGGCCATCACCGATGCCCTGGAGT...GTATACTTGGGACCAGATCAGCTCTGCATCCTTCATTCTTCCCTCTGTCTCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR CCA 90 bp | ATTATGTTAAGGGATGCTGTCAGTCCTGTCTCCCCTTTACACAACACAGTGACCCCAACTGTGTGTGTGTaGCTCTCATGGAGGCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: IMLRDAVSPVSPLHNTVTPTVCV*LSWRLG Trigger: CCCCAGCCTCCATGAGAGCCACACACACACAGTTGG...GGTCACTGTGTTGTGTAAAGGGGAGACAGGACTGACAGCATCCCTTAACATAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | AGACCCAAGATAGCACAAATCAACCCGGGTCTCAGAGAAATGGCAGTAATTTTTCCACGAGCGAGATTCTaGGAGCCTGCAGGACCTCTG | + |
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Preference number: 4 (lower is better) Translates to: RPKIAQINPGLREMAVIFPRARF*EPAGPL Trigger: CAGAGGTCCTGCAGGCTCTCAGAATCTCGCTCGTGG...AAAAATTACTGCCATTTCTCTGAGACCCGGGTTGATTTGTGCTATCTTGGGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR GCA 90 bp | ACTTTCCTTATGGACAGCCAGGACCCAGTGGAAACAATTCCTGGGTGTTATCTTGAGATTCTGAGAGCCTaGAGGACCTCTGGGTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: TFLMDSQDPVETIPGCYLEILRA*RTSGSQ Trigger: TTGGGACCCAGAGGTCCTGCAGGCTCTCAGAATCTC...AAGATAACACCCAGGAATTGTTTCCACTGGGTCCTGGCTGTCCATAAGGAAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR GCA 90 bp | CAGGTAGACCAGAAGGCCTTCCCTCCAAGCCTGCTAGAGAGAAAGACATTTTCTTTTCCTTTCTCGGGCTaGAGAGATCCTCTTGCGTTC | + |
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Preference number: 4 (lower is better) Translates to: QVDQKAFPPSLLERKTFSFPFSG*RDPLAF Trigger: GAACGCAAGAGGATCTCTGCAGCCCGAGAAAGGAAA...AGAAAATGTCTTTCTCTCTAGCAGGCTTGGAGGGAAGGCCTTCTGGTCTACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR CCA 90 bp | AGGGGTCTGGAGGATGCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCAGCCTGCAGGACCTCTaGGTCCCAAGCCCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: RGLEDAGNQTQNKSINLSSLQDL*VPSPCH Trigger: GTGACAGGGGCTTGGGACCCAGAGGTCCTGCAGGCT...GCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | AAGTCAGTAATCACACCCATTCTCAAAAACTCTGTAAAATCCCAGGTAGACCAGCTGTTGGAGGCCTCCTaGGGAAGGCCTTCTAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: KSVITPILKNSVKSQVDQLLEAS*GRPSRD Trigger: GTCCCTAGAAGGCCTTCCTCAGGAGGCCTCCAACAG...CTGGTCTACCTGGGATTTTACAGAGTTTTTGAGAATGGGTGTGATTACTGACTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | AGACCCAAGATAGCACAAATCAACCCGGGTCTCAGAGAAATGGCAGTAATTTTTACTCCAGGGCATCGGTaGTGGCCCAGTATCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: RPKIAQINPGLREMAVIFTPGHR*WPSICP Trigger: TGGACAGATACTGGGCCATCACCGATGCCCTGGAGT...AAAAATTACTGCCATTTCTCTGAGACCCGGGTTGATTTGTGCTATCTTGGGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | GGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCATCGGACATCTCCTCGTaGGCCGTGGCCTGCCGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GNQTQNKSINLSQRPKIASDISS*AVACRQ Trigger: CTGGCGGCAGGCCACGGCTCACGAGGAGATGTCCGA...TGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR GCA 90 bp | AGACCCAAGATAGCACAAATCAACCCGGGTCTCAGAGAAATGGCAGTAATTTTTGCCTGTGATAAGCTGTaGCGTGGTGAAGCGCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RPKIAQINPGLREMAVIFACDKL*RGEALP Trigger: GGGAAGCGCTTCACCACGGCACAGCTTATCACAGGC...AAAAATTACTGCCATTTCTCTGAGACCCGGGTTGATTTGTGCTATCTTGGGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | TACCACTTTCCTTATGGACAGCCAGGACCCAGTGGAAACAATTCCTGGGTGTTACTGCCGCCAGAAGAGTaGAGGGATGGAGATACAAAT | + |
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Preference number: 4 (lower is better) Translates to: YHFPYGQPGPSGNNSWVLLPPEE*RDGDTN Trigger: ATTTGTATCTCCATCCCTCCACTCTTCTGGCGGCAG...TAACACCCAGGAATTGTTTCCACTGGGTCCTGGCTGTCCATAAGGAAAGTGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR GCA 90 bp | AGACCCAAGATAGCACAAATCAACCCGGGTCTCAGAGAAATGGCAGTAATTTTTGAGATTCTGAGAGCCTaGAGGACCTCTGGGTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: RPKIAQINPGLREMAVIFEILRA*RTSGSQ Trigger: TTGGGACCCAGAGGTCCTGCAGGCTCTCAGAATCTC...AAAAATTACTGCCATTTCTCTGAGACCCGGGTTGATTTGTGCTATCTTGGGTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR GCA 90 bp | AAGCCTGCTAGAGAGAAAGACATTTTCTCACCTGGGTCCTACAGTTATATTTCTGCCTGTGATAAGCTGTaGCGTGGTGAAGCGCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: KPAREKDIFSPGSYSYISACDKL*RGEALP Trigger: GGGAAGCGCTTCACCACGGCACAGCTTATCACAGGC...AGAAATATAACTGTAGGACCCAGGTGAGAAAATGTCTTTCTCTCTAGCAGGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR CCA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGAGCCTGCAGGACCTCTaGGTCCCAAGCCCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: QNKSINLSQRPKIAQINPSLQDL*VPSPCH Trigger: GTGACAGGGGCTTGGGACCCAGAGGTCCTGCAGGCT...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGTCTCCTCGTGAGCCGTaGCCTGCCGCCAGAAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: QNKSINLSQRPKIAQINPSPREP*PAARRV Trigger: CACTCTTCTGGCGGCAGGCCACGGCTCACGAGGAGA...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGCTGTTGGAGGCCTCCTaGGGAAGGCCTTCTAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: QNKSINLSQRPKIAQINPLLEAS*GRPSRD Trigger: GTCCCTAGAAGGCCTTCCTCAGGAGGCCTCCAACAG...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | GACATTTTCTCACCTGGGTCCTACAGTTATATTTCTTCCAACCCAGAGAACCATTGGCCAAGGAGCCAATaGGATAATTGGCTGGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: DIFSPGSYSYISSNPENHWPRSQ*DNWLGC Trigger: ACACCCCAGCCAATTATCTCATTGGCTCCTTGGCCA...ATGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGACCCAGGTGAGAAAATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR GCA 90 bp | GCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATACGCAATCATGGCTGCTaGGTGGCCTGCGGTTCGACG | + |
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Preference number: 4 (lower is better) Translates to: AGNQTQNKSINLSQRPKIRNHGC*VACGST Trigger: CGTCGAACCGCAGGCCACGCAGCAGCCATGATTGCG...TATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR GCA 90 bp | GACATTTTCTCACCTGGGTCCTACAGTTATATTTCTTCCAACCCAGAGAACCATTCCAACAAGAGTCCCTaGAGATGGGGAGGACCAATG | + |
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Preference number: 4 (lower is better) Translates to: DIFSPGSYSYISSNPENHSNKSP*RWGGPM Trigger: CATTGGTCCTCCCCATCTGCAGGGACTCTTGTTGGA...ATGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGACCCAGGTGAGAAAATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR CCA 90 bp | AGACCCAAGATAGCACAAATCAACCCGGGTCTCAGAGAAATGGCAGTAATTTTTATGTCACACAGGATCTaGCCAAAGTTCCAGGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: RPKIAQINPGLREMAVIFMSHRI*PKFQVR Trigger: CCGCACCTGGAACTTTGGCCAGATCCTGTGTGACAT...AAAAATTACTGCCATTTCTCTGAGACCCGGGTTGATTTGTGCTATCTTGGGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | GGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCATCTCCTCGTGAGCCGTaGCCTGCCGCCAGAAGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: GNQTQNKSINLSQRPKIASPREP*PAARRV Trigger: CACTCTTCTGGCGGCAGGCCACGGCTCACGAGGAGA...TGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| 3UTR CAA 72 bp | TTGAGCGGCAGGATGGTGGGTTTTAACTTCGGAACATaGCGTAATAGAGACAGAGGGAAGAATGAAGGATGC | + |
|
Preference number: 4 (lower is better) Translates to: LSGRMVGFNFGT*RNRDRGKNEGC Trigger: GCATCCTTCATTCTTCCCTCTGTCTCTATTACGCAATGTTCCGAAGTTAAAACCCACCATCCTGCCGCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGAGGCCGTGCAGCACGTaGTGTCAGAAGACACCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: QNKSINLSQRPKIAQINPRPCST*CQKTPR Trigger: TCTGGGTGTCTTCTGACATCACGTGCTGCACGGCCT...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR GCA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGGCCTGTGATAAGCTGTaGCGTGGTGAAGCGCTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: QNKSINLSQRPKIAQINPACDKL*RGEALP Trigger: GGGAAGCGCTTCACCACGGCACAGCTTATCACAGGC...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCTGGAGGATGCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCATGTCACACAGGATCTaGCCAAAGTTCCAGGTGCGG | + |
|
Preference number: 4 (lower is better) Translates to: RGLEDAGNQTQNKSINLSMSHRI*PKFQVR Trigger: CCGCACCTGGAACTTTGGCCAGATCCTGTGTGACAT...GCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCTGGAGGATGCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCAATAACCTAGCCACGTaGAGAAGTCAAAGAGGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: RGLEDAGNQTQNKSINLSNNLAT*RSQRGP Trigger: CGGCCCTCTTTGACTTCTTCACGTGGCTAGGTTATT...GCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGCATTCAGGGATCTGTTaGAGGCCTCCTGAGGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: QNKSINLSQRPKIAQINPHSGIC*RPPEEG Trigger: GCCTTCCTCAGGAGGCCTCCAACAGATCCCTGAATG...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | GGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACCAACTGTGTGTGTGTaGCTCTCATGGAGGCTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GNQTQNKSINLSQRPKIAPTVCV*LSWRLG Trigger: CCCCAGCCTCCATGAGAGCCACACACACACAGTTGG...TGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR GCA 90 bp | GCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGAGATTCTGAGAGCCTaGAGGACCTCTGGGTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: AGNQTQNKSINLSQRPKIEILRA*RTSGSQ Trigger: TTGGGACCCAGAGGTCCTGCAGGCTCTCAGAATCTC...TATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR CCA 90 bp | GGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACATTCAGGGATCTGTTaGAGGCCTCCTGAGGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GNQTQNKSINLSQRPKIAHSGIC*RPPEEG Trigger: GCCTTCCTCAGGAGGCCTCCAACAGATCCCTGAATG...TGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR TCA 90 bp | GGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCATGGCCAAGGAGCCAATaGGATAATTGGCTGGGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: GNQTQNKSINLSQRPKIAWPRSQ*DNWLGC Trigger: ACACCCCAGCCAATTATCTCATTGGCTCCTTGGCCA...TGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR TCA 90 bp | GCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATATGGCCAAGGAGCCAATaGGATAATTGGCTGGGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: AGNQTQNKSINLSQRPKIWPRSQ*DNWLGC Trigger: ACACCCCAGCCAATTATCTCATTGGCTCCTTGGCCA...TATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR GCA 90 bp | GGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCATCCAACAAGAGTCCCTaGAGATGGGGAGGACCAATG | + |
|
Preference number: 4 (lower is better) Translates to: GNQTQNKSINLSQRPKIASNKSP*RWGGPM Trigger: CATTGGTCCTCCCCATCTGCAGGGACTCTTGTTGGA...TGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR CCA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGCTGCCGCCAGAAGAGTaGAGGGATGGAGATACAAAT | + |
|
Preference number: 4 (lower is better) Translates to: QNKSINLSQRPKIAQINPLPPEE*RDGDTN Trigger: ATTTGTATCTCCATCCCTCCACTCTTCTGGCGGCAG...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | AGACATTTTCTCACCTGGGTCCTACAGTTATATTTCTTCCAACCCAGAGAACCACACAGGTCGAGTAGATaGTGTAAGAAATCTGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: RHFLTWVLQLYFFQPREPHRSSR*CKKSEM Trigger: CATCTCAGATTTCTTACACCATCTACTCGACCTGTG...TGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGACCCAGGTGAGAAAATGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR TCA 90 bp | GCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAAATAACCTAGCCACGTaGAGAAGTCAAAGAGGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: AGNQTQNKSINLSQRPKINNLAT*RSQRGP Trigger: CGGCCCTCTTTGACTTCTTCACGTGGCTAGGTTATT...TATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR GCA 90 bp | GCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATATTTCCTTTCTCGGGCTaGAGAGATCCTCTTGCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: AGNQTQNKSINLSQRPKIFPFSG*RDPLAF Trigger: GAACGCAAGAGGATCTCTGCAGCCCGAGAAAGGAAA...TATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR CCA 90 bp | GCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATACTGCCGCCAGAAGAGTaGAGGGATGGAGATACAAAT | + |
|
Preference number: 4 (lower is better) Translates to: AGNQTQNKSINLSQRPKILPPEE*RDGDTN Trigger: ATTTGTATCTCCATCCCTCCACTCTTCTGGCGGCAG...TATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR CCA 90 bp | GCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATACACAGGTCGAGTAGATaGTGTAAGAAATCTGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: AGNQTQNKSINLSQRPKIHRSSR*CKKSEM Trigger: CATCTCAGATTTCTTACACCATCTACTCGACCTGTG...TATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CCA 90 bp | GGCAATCAAACACAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACACAGGTCGAGTAGATaGTGTAAGAAATCTGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: GNQTQNKSINLSQRPKIAHRSSR*CKKSEM Trigger: CATCTCAGATTTCTTACACCATCTACTCGACCTGTG...TGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 90 bp | GGACAGCACCACCACGAGCGAGATTCTGAGAGCCTGCAGGACCTCTaGGTCCCAAGCCCCTGTCACATTCAGGGATCTGTTGGAGGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: GQHHHERDSESLQDL*VPSPCHIQGSVGGL Trigger: GAGGCCTCCAACAGATCCCTGAATGTGACAGGGGCTTGGGACCCAGAGGTCCTGCAGGCTCTCAGAATCTCGCTCGTGGTGGTGCTGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS GCA 90 bp | GTTGAGCGAGCAGAGCGAAGAGCCAGCAGAGCCTGTGATAAGCTGTaGCGTGGTGAAGCGCTTCCCGTAGAGGGAGGGTGGGTTCAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: VERAERRASRACDKL*RGEALPVEGGWVQD Trigger: ATCCTGAACCCACCCTCCCTCTACGGGAAGCGCTTCACCACGGCACAGCTTATCACAGGCTCTGCTGGCTCTTCGCTCTGCTCGCTCAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 90 bp | GCAGGACCTCTGGGTCCCAAGCCCCTGTCACATTCAGGGATCTGTTaGAGGCCTCCTGAGGAAGGCCTTCTAGGGACTGGTTTGGAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: AGPLGPKPLSHSGIC*RPPEEGLLGTGLEE Trigger: CTCCTCCAAACCAGTCCCTAGAAGGCCTTCCTCAGGAGGCCTCCAACAGATCCCTGAATGTGACAGGGGCTTGGGACCCAGAGGTCCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 90 bp | TGTGATAAGCTGTGCCGTGGTGAAGCGCTTCCCGTAGAGGGAGGGTaGGTTCAGGATTCGACTCCGGGCGGCCACGTATATGCGGCCATA | + |
|
Preference number: 5 (lower is better) Translates to: CDKLCRGEALPVEGG*VQDSTPGGHVYAAI Trigger: TATGGCCGCATATACGTGGCCGCCCGGAGTCGAATCCTGAACCCACCCTCCCTCTACGGGAAGCGCTTCACCACGGCACAGCTTATCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS GCA 90 bp | AGTGTGATGACGGACAGCACCACCACGAGCGAGATTCTGAGAGCCTaGAGGACCTCTGGGTCCCAAGCCCCTGTCACATTCAGGGATCTG | + |
|
Preference number: 5 (lower is better) Translates to: SVMTDSTTTSEILRA*RTSGSQAPVTFRDL Trigger: CAGATCCCTGAATGTGACAGGGGCTTGGGACCCAGAGGTCCTGCAGGCTCTCAGAATCTCGCTCGTGGTGGTGCTGTCCGTCATCACACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS GCA 90 bp | GGAGATACAAATAGAGATGATCCAGACGGCCGCAATCATGGCTGCTaGGTGGCCTGCGGTTCGACGCTTGCTGTACTCCAGGGCATCGGT | + |
|
Preference number: 5 (lower is better) Translates to: GDTNRDDPDGRNHGC*VACGSTLAVLQGIG Trigger: ACCGATGCCCTGGAGTACAGCAAGCGTCGAACCGCAGGCCACGCAGCAGCCATGATTGCGGCCGTCTGGATCATCTCTATTTGTATCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 90 bp | GCAGTCGGACATCTCCTCGTGAGCCGTGGCCTGCCGCCAGAAGAGTaGAGGGATGGAGATACAAATAGAGATGATCCAGACGGCCGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: AVGHLLVSRGLPPEE*RDGDTNRDDPDGRN Trigger: ATTGCGGCCGTCTGGATCATCTCTATTTGTATCTCCATCCCTCCACTCTTCTGGCGGCAGGCCACGGCTCACGAGGAGATGTCCGACTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS GCA 90 bp | GATGGAGATACAAATAGAGATGATCCAGACGGCCGCAATCATGGCTaGTGCGTGGCCTGCGGTTCGACGCTTGCTGTACTCCAGGGCATC | + |
|
Preference number: 5 (lower is better) Translates to: DGDTNRDDPDGRNHG*CVACGSTLAVLQGI Trigger: GATGCCCTGGAGTACAGCAAGCGTCGAACCGCAGGCCACGCAGCAGCCATGATTGCGGCCGTCTGGATCATCTCTATTTGTATCTCCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 90 bp | ATACAAATAGAGATGATCCAGACGGCCGCAATCATGGCTGCTGCGTaGCCTGCGGTTCGACGCTTGCTGTACTCCAGGGCATCGGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: IQIEMIQTAAIMAAA*PAVRRLLYSRASVM Trigger: CATCACCGATGCCCTGGAGTACAGCAAGCGTCGAACCGCAGGCCACGCAGCAGCCATGATTGCGGCCGTCTGGATCATCTCTATTTGTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 90 bp | GGCGGCCACGTATATGCGGCCATACAGGATAATGAGCAAGATGGATaGGATATAGAAGGCGCCACAGGTCGAGTAGATGGTGTAAGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: GGHVYAAIQDNEQDG*DIEGATGRVDGVRN Trigger: ATTTCTTACACCATCTACTCGACCTGTGGCGCCTTCTATATCCCATCCATCTTGCTCATTATCCTGTATGGCCGCATATACGTGGCCGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CAA 90 bp | GACATTTTCTCACCTGGGTCCTACAGTTATATTTCTTCCAACCCAGAGAACCATGTAAGGACGAAGGCATaGGAGAGGACAGTGGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: DIFSPGSYSYISSNPENHVRTKA*ERTVAS Trigger: ACTGGCCACTGTCCTCTCCAATGCCTTCGTCCTTAC...ATGGTTCTCTGGGTTGGAAGAAATATAACTGTAGGACCCAGGTGAGAAAATGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR CAA 90 bp | AAAGGCAACCCCAGTGGGGTTACAGGACATAACAGGCAAACAAGAGTCACCCCCATGCTATCAGCAAGCTaGATTTTCACCTGGTTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: KGNPSGVTGHNRQTRVTPMLSAS*IFTWLK Trigger: TTTCAACCAGGTGAAAATCAAGCTTGCTGATAGCAT...GGGGGTGACTCTTGTTTGCCTGTTATGTCCTGTAACCCCACTGGGGTTGCCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CAA 90 bp | AGGGGTCTGGAGGATGCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCGTAAGGACGAAGGCATaGGAGAGGACAGTGGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: RGLEDAGNQTQNKSINLSVRTKA*ERTVAS Trigger: ACTGGCCACTGTCCTCTCCAATGCCTTCGTCCTTAC...GCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CAA 90 bp | AGACCCAAGATAGCACAAATCAACCCGGGTCTCAGAGAAATGGCAGTAATTTTTGGGGTGTGGAGCTTCTaGGTGAGTAGAATGGTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: RPKIAQINPGLREMAVIFGVWSF*VSRMVV Trigger: TACCACCATTCTACTCACCAAGAAGCTCCACACCCC...AAAAATTACTGCCATTTCTCTGAGACCCGGGTTGATTTGTGCTATCTTGGGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS-3UTR CAA 90 bp | AAGCCTGCTAGAGAGAAAGACATTTTCTCACCTGGGTCCTACAGTTATATTTCTGGGGTGTGGAGCTTCTaGGTGAGTAGAATGGTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: KPAREKDIFSPGSYSYISGVWSF*VSRMVV Trigger: TACCACCATTCTACTCACCAAGAAGCTCCACACCCC...AGAAATATAACTGTAGGACCCAGGTGAGAAAATGTCTTTCTCTCTAGCAGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088677.5 |
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| CDS-3UTR CAA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGGTAAGGACGAAGGCATaGGAGAGGACAGTGGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: QNKSINLSQRPKIAQINPVRTKA*ERTVAS Trigger: ACTGGCCACTGTCCTCTCCAATGCCTTCGTCCTTAC...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR CAA 90 bp | AGGGGTCTGGAGGATGCTGGCAATCAAACACAGAACAAATCTATTAATTTAAGCATGCTATCAGCAAGCTaGATTTTCACCTGGTTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: RGLEDAGNQTQNKSINLSMLSAS*IFTWLK Trigger: TTTCAACCAGGTGAAAATCAAGCTTGCTGATAGCAT...GCTTAAATTAATAGATTTGTTCTGTGTTTGATTGCCAGCATCCTCCAGACCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS-3UTR CAA 90 bp | CAGAACAAATCTATTAATTTAAGCCAAAGACCCAAGATAGCACAAATCAACCCGATGCTATCAGCAAGCTaGATTTTCACCTGGTTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: QNKSINLSQRPKIAQINPMLSAS*IFTWLK Trigger: TTTCAACCAGGTGAAAATCAAGCTTGCTGATAGCAT...CGGGTTGATTTGTGCTATCTTGGGTCTTTGGCTTAAATTAATAGATTTGTTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS GCA 72 bp | GATCCAGACGGCCGCAATCATGGCTGCTGCGTGGCCTaGGGTTCGACGCTTGCTGTACTCCAGGGCATCGGT | + |
|
Preference number: 6 (lower is better) Translates to: DPDGRNHGCCVA*GSTLAVLQGIG Trigger: ACCGATGCCCTGGAGTACAGCAAGCGTCGAACCGCAGGCCACGCAGCAGCCATGATTGCGGCCGTCTGGATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS GCA 72 bp | GCAGAGCGAAGAGCCAGCAGAGCCTGTGATAAGCTGTaGCGTGGTGAAGCGCTTCCCGTAGAGGGAGGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: AERRASRACDKL*RGEALPVEGGW Trigger: CCACCCTCCCTCTACGGGAAGCGCTTCACCACGGCACAGCTTATCACAGGCTCTGCTGGCTCTTCGCTCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS CCA 72 bp | CTGTGCCGTGGTGAAGCGCTTCCCGTAGAGGGAGGGTaGGTTCAGGATTCGACTCCGGGCGGCCACGTATAT | + |
|
Preference number: 6 (lower is better) Translates to: LCRGEALPVEGG*VQDSTPGGHVY Trigger: ATATACGTGGCCGCCCGGAGTCGAATCCTGAACCCACCCTCCCTCTACGGGAAGCGCTTCACCACGGCACAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
||
| CDS GCA 72 bp | ACGGACAGCACCACCACGAGCGAGATTCTGAGAGCCTaGAGGACCTCTGGGTCCCAAGCCCCTGTCACATTC | + |
|
Preference number: 6 (lower is better) Translates to: TDSTTTSEILRA*RTSGSQAPVTF Trigger: GAATGTGACAGGGGCTTGGGACCCAGAGGTCCTGCAGGCTCTCAGAATCTCGCTCGTGGTGGTGCTGTCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 72 bp | TGTTCACCAGGCAGTCGGACATCTCCTCGTGAGCCGTaGCCTGCCGCCAGAAGAGTGGAGGGATGGAGATAC | + |
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Preference number: 6 (lower is better) Translates to: CSPGSRTSPREP*PAARRVEGWRY Trigger: GTATCTCCATCCCTCCACTCTTCTGGCGGCAGGCCACGGCTCACGAGGAGATGTCCGACTGCCTGGTGAACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 72 bp | CTGGGTCCCAAGCCCCTGTCACATTCAGGGATCTGTTaGAGGCCTCCTGAGGAAGGCCTTCTAGGGACTGGT | + |
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Preference number: 6 (lower is better) Translates to: LGPKPLSHSGIC*RPPEEGLLGTG Trigger: ACCAGTCCCTAGAAGGCCTTCCTCAGGAGGCCTCCAACAGATCCCTGAATGTGACAGGGGCTTGGGACCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 72 bp | CATCTCCTCGTGAGCCGTGGCCTGCCGCCAGAAGAGTaGAGGGATGGAGATACAAATAGAGATGATCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: HLLVSRGLPPEE*RDGDTNRDDPD Trigger: GTCTGGATCATCTCTATTTGTATCTCCATCCCTCCACTCTTCTGGCGGCAGGCCACGGCTCACGAGGAGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 72 bp | AGAGGGCCGGGTGGATCCAACAAGAGTCCCTGCAGATaGGGAGGACCAATGATACTACAAAGAAAGGCAACC | + |
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Preference number: 6 (lower is better) Translates to: RGPGGSNKSPCR*GGPMILQRKAT Trigger: GGTTGCCTTTCTTTGTAGTATCATTGGTCCTCCCCATCTGCAGGGACTCTTGTTGGATCCACCCGGCCCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CCA 72 bp | GTATATGCGGCCATACAGGATAATGAGCAAGATGGATaGGATATAGAAGGCGCCACAGGTCGAGTAGATGGT | + |
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Preference number: 6 (lower is better) Translates to: VYAAIQDNEQDG*DIEGATGRVDG Trigger: ACCATCTACTCGACCTGTGGCGCCTTCTATATCCCATCCATCTTGCTCATTATCCTGTATGGCCGCATATAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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| CDS CAA 72 bp | TTAGTGGCTTTCCTTTCTCGGGCTGCAGAGATCCTCTaGCGTTCTAGGATGCTATCAGCAAGCTTGATTTTC | + |
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Preference number: 6 (lower is better) Translates to: LVAFLSRAAEIL*RSRMLSASLIF Trigger: GAAAATCAAGCTTGCTGATAGCATCCTAGAACGCAAGAGGATCTCTGCAGCCCGAGAAAGGAAAGCCACTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088677.5 ENSMUST00000117699.2 ENSMUST00000121571.8 |
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