Pregenerated sensors for HTR1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021721Ensembl transcript IDs: ENSMUST00000022235.6
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGCTCTGGCATAGCTCACTCCTAGAAAAGAAACTGAGGGTGAGGTaGGCCATCCCGGGCATCTCAGCACCCTCAATGAGCCCTCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: LLWHSSLLEKKLRVR*AIPGISAPSMSPPW Trigger: CCAGGGAGGGCTCATTGAGGGTGCTGAGATGCCCGGGATGGCTCACCTCACCCTCAGTTTCTTTTCTAGGAGTGAGCTATGCCAGAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR GCA 90 bp | TCAGCACCCTCAATGAGCCCTCCCTGGCCAGCAGTGGGCGCCTTCTaGAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAA | + |
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Preference number: 1 (lower is better) Translates to: SAPSMSPPWPAVGAF*SPQGLSRTYRKANK Trigger: TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCCCACTGCTGGCCAGGGAGGGCTCATTGAGGGTGCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR TCA 90 bp | GCACAAACTCAAACTTCTCTACTAGCTCCTGGATACTGTGAGAGGTaGGTGGAGGAACCCGGAGGCTGCAAACTCAAGGTGAGCTGCTCT | + |
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Preference number: 1 (lower is better) Translates to: AQTQTSLLAPGYCER*VEEPGGCKLKVSCS Trigger: AGAGCAGCTCACCTTGAGTTTGCAGCCTCCGGGTTCCTCCACTCACCTCTCACAGTATCCAGGAGCTAGTAGAGAAGTTTGAGTTTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR GCA 90 bp | AAATTTACAAACAAGTACTGTTTGTACTGGAGAAGCCCAGCCCAGTaGGTCTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGAC | + |
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Preference number: 1 (lower is better) Translates to: KFTNKYCLYWRSPAQ*VFSTEPPVSLSGVD Trigger: GTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAAATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CCA 90 bp | GACAGGAAAACATCCGCAGGCCTTCTTGGCTCTTCCTTTTGGGCCTaGCTTCTTGCTTATAAGTCCACTCCAGCAGACATCTTTGTCACT | + |
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Preference number: 1 (lower is better) Translates to: DRKTSAGLLGSSFWA*LLAYKSTPADIFVT Trigger: AGTGACAAAGATGTCTGCTGGAGTGGACTTATAAGCAAGAAGCCAGGCCCAAAAGGAAGAGCCAAGAAGGCCTGCGGATGTTTTCCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR GCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTACAGACCAGCCGTGAGTaGATGGAGACCAGAATCAGC | + |
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Preference number: 2 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLQTSRE*METRIS Trigger: GCTGATTCTGGTCTCCATGCACTCACGGCTGGTCTG...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CAA 90 bp | TTGGTGAGTGCTGACACCAGGACAGGAAAACATCCGCAGGCCTTCTaGGCTCTTCCTTTTGGGCCTGGCTTCTTGCTTATAAGTCCACTC | + |
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Preference number: 2 (lower is better) Translates to: LVSADTRTGKHPQAF*ALPFGPGFLLISPL Trigger: GAGTGGACTTATAAGCAAGAAGCCAGGCCCAAAAGGAAGAGCCAAGAAGGCCTGCGGATGTTTTCCTGTCCTGGTGTCAGCACTCACCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAATTCCCAGACCAGCCGTaGGTGCATGGAGACCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: GAFCSPQGLSRTYRKANKFPDQP*VHGDQN Trigger: ATTCTGGTCTCCATGCACTCACGGCTGGTCTGGGAA...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTAGAGACAGAGCAGTCTTaGACCTCAAAGTTCCAGATA | + |
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Preference number: 2 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLETEQS*TSKFQI Trigger: TATCTGGAACTTTGAGGTTCAAGACTGCTCTGTCTC...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CAA 90 bp | GAACAGATGTTTCTAGAGCAAGAGGGAGGGAGAGACAGAGCAGTCTaGAACCTCAAAGTTCCAGATATAGGGCAGAGGGTGGCAGTCCTA | + |
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Preference number: 2 (lower is better) Translates to: EQMFLEQEGGRDRAV*NLKVPDIGQRVAVL Trigger: TAGGACTGCCACCCTCTGCCCTATATCTGGAACTTTGAGGTTCAAGACTGCTCTGTCTCTCCCTCCCTCTTGCTCTAGAAACATCTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | AGCTGGGTGCCCCCTTTCCAGTCTTGTTTAAAGTCTCTTTCTCAAAGTAACAAGAAACTGAGGGTGAGGTaGGCCATCCCGGGCATCTCA | + |
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Preference number: 2 (lower is better) Translates to: SWVPPFQSCLKSLSQSNKKLRVR*AIPGIS Trigger: TGAGATGCCCGGGATGGCTCACCTCACCCTCAGTTT...CTTGTTACTTTGAGAAAGAGACTTTAAACAAGACTGGAAAGGGGGCACCCAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CCA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAACTTGGCTCTTCCTTTTaGGCCTGGCTTCTTGCTTAT | + |
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Preference number: 2 (lower is better) Translates to: GAFCSPQGLSRTYRKANKLGSSF*AWLLAY Trigger: ATAAGCAAGAAGCCAGGCCCAAAAGGAAGAGCCAAG...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CCA 90 bp | AGCTGGGTGCCCCCTTTCCAGTCTTGTTTAAAGTCTCTTTCTCAAAGTAACAAGATCCGCAGGCCTTCTTaGCTCTTCCTTTTGGGCCTG | + |
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Preference number: 2 (lower is better) Translates to: SWVPPFQSCLKSLSQSNKIRRPS*LFLLGL Trigger: CAGGCCCAAAAGGAAGAGCCAAGAAGGCCTGCGGAT...CTTGTTACTTTGAGAAAGAGACTTTAAACAAGACTGGAAAGGGGGCACCCAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CCA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGAATTTGGGGGCTGACTTaGCTGGGACTCCACAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGIWGLT*LGLHRD Trigger: ATCTCTGTGGAGTCCCAGCCAAGTCAGCCCCCAAAT...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | TTACAAACAAGTACTGTTTGTACTGGAGAAGCCCAGCCCAGTGCGTCTTCTCCATTCTTTGGTGAGTGCTaGCACCAGGACAGGAAAACA | + |
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Preference number: 2 (lower is better) Translates to: LQTSTVCTGEAQPSASSPFFGEC*HQDRKT Trigger: TGTTTTCCTGTCCTGGTGTCAGCACTCACCAAAGAA...TGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | CACCCACACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACAGCTCCTGGATACTGTaGGAGGTGAGTGGAGGAACC | + |
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Preference number: 2 (lower is better) Translates to: HPHFLRNSKSPTSCTNSNSSWIL*EVSGGT Trigger: GGTTCCTCCACTCACCTCTCACAGTATCCAGGAGCT...GTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTGTGGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR GCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTATTTCAAAACAGCAGGTaGAGACATTGGAAAGATACA | + |
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Preference number: 2 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLFQNSR*RHWKDT Trigger: TGTATCTTTCCAATGTCTGCACCTGCTGTTTTGAAA...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CCA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAATCTTCCTTTTGGGCCTaGCTTCTTGCTTATAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: GAFCSPQGLSRTYRKANKSSFWA*LLAYKS Trigger: GGACTTATAAGCAAGAAGCCAGGCCCAAAAGGAAGA...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | CACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACTTCTCTCCAGGGCGGGGATATTaGGTGAACAGGAAGGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: HFLRNSKSPTSCTNSNFSPGRGY*VNRKGP Trigger: AGGACCCTTCCTGTTCACTCAATATCCCCGCCCTGG...AGAGAAGTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGATGTCAATTTCTTTGGTaGGTGCTGACACCAGGACAG | + |
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Preference number: 2 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGCQFLW*VLTPGQ Trigger: CTGTCCTGGTGTCAGCACTCACCAAAGAAATTGACA...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAAACTGTCCCCTTAAAATaGGATAGAGAGAGAAGATCT | + |
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Preference number: 2 (lower is better) Translates to: GAFCSPQGLSRTYRKANKTVPLK*DRERRS Trigger: AGATCTTCTCTCTCTATCTCATTTTAAGGGGACAGT...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR GCA 90 bp | CGGAGAATAAATCCGGGCATTTTTAGGAAATGCTACACAATGCTGTTCCTTGAACTTACCTCCTCTACGTaGCTCACACCCACACTTCCT | + |
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Preference number: 2 (lower is better) Translates to: RRINPGIFRKCYTMLFLELTSST*LTPTLP Trigger: AGGAAGTGTGGGTGTGAGGCACGTAGAGGAGGTAAG...TTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CCA 90 bp | CACCCACACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACGTGGGTGCTGTGCATTaGGGAAAGGGATCTTTTGCT | + |
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Preference number: 2 (lower is better) Translates to: HPHFLRNSKSPTSCTNSNVGAVH*GKGSFA Trigger: AGCAAAAGATCCCTTTCCCCAATGCACAGCACCCAC...GTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTGTGGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR GCA 90 bp | CGGAGAATAAATCCGGGCATTTTTAGGAAATGCTACACAATGCTGTTCCTTGAAAGAAAGTGGGTGCTGTaGATTGGGGAAAGGGATCTT | + |
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Preference number: 2 (lower is better) Translates to: RRINPGIFRKCYTMLFLERKWVL*IGERDL Trigger: AAGATCCCTTTCCCCAATGCACAGCACCCACTTTCT...TTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CAA 90 bp | ACAAACAAACAAATAAAGCAAGCTAAATTTACAAACAAGTACTGTTaGTACTGGAGAAGCCCAGCCCAGTGCGTCTTCTCCACAGAACCC | + |
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Preference number: 2 (lower is better) Translates to: TNKQIKQAKFTNKYC*YWRSPAQCVFSTEP Trigger: GGGTTCTGTGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAAATTTAGCTTGCTTTATTTGTTTGTTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR TCA 90 bp | CACCCACACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACTCCTTCCAAATAGTCTaGTTGTCAATTTCTTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: HPHFLRNSKSPTSCTNSNSFQIV*LSISLV Trigger: CACCAAAGAAATTGACAATCAGACTATTTGGAAGGA...GTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTGTGGGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTATTTTACCCTCAGAATTaGGGGGCTGACTTGGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLFYPQN*GADLAG Trigger: CCCAGCCAAGTCAGCCCCCAAATTCTGAGGGTAAAA...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CCA 72 bp | GGAACCCGGAGGCTGCAAACTCAAGGTGAGCTGCTCTaGCATAGCTCACTCCTAGAAAAGAAACTGAGGGTG | + |
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Preference number: 3 (lower is better) Translates to: GTRRLQTQGELL*HSSLLEKKLRV Trigger: CACCCTCAGTTTCTTTTCTAGGAGTGAGCTATGCCAGAGCAGCTCACCTTGAGTTTGCAGCCTCCGGGTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR TCA 72 bp | CAAACTTCTCTACTAGCTCCTGGATACTGTGAGAGGTaGGTGGAGGAACCCGGAGGCTGCAAACTCAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: QTSLLAPGYCER*VEEPGGCKLKV Trigger: CACCTTGAGTTTGCAGCCTCCGGGTTCCTCCACTCACCTCTCACAGTATCCAGGAGCTAGTAGAGAAGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR GCA 72 bp | AACAAGTACTGTTTGTACTGGAGAAGCCCAGCCCAGTaGGTCTTCTCCACAGAACCCCCTGTCAGTCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: NKYCLYWRSPAQ*VFSTEPPVSLS Trigger: TGAGAGACTGACAGGGGGTTCTGTGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CCA 72 bp | ACATCCGCAGGCCTTCTTGGCTCTTCCTTTTGGGCCTaGCTTCTTGCTTATAAGTCCACTCCAGCAGACATC | + |
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Preference number: 3 (lower is better) Translates to: TSAGLLGSSFWA*LLAYKSTPADI Trigger: GATGTCTGCTGGAGTGGACTTATAAGCAAGAAGCCAGGCCCAAAAGGAAGAGCCAAGAAGGCCTGCGGATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGACATCCGCAGGCCTTCTaGGCTCTTCCTTTTGGGCCT | + |
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Preference number: 3 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGHPQAF*ALPFGP Trigger: AGGCCCAAAAGGAAGAGCCAAGAAGGCCTGCGGATG...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CCA 72 bp | AGGAAAACATCCGCAGGCCTTCTTGGCTCTTCCTTTTaGGCCTGGCTTCTTGCTTATAAGTCCACTCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: RKTSAGLLGSSF*AWLLAYKSTPA Trigger: TGCTGGAGTGGACTTATAAGCAAGAAGCCAGGCCCAAAAGGAAGAGCCAAGAAGGCCTGCGGATGTTTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR TCA 72 bp | ACAAACTCAAACTTCTCTACTAGCTCCTGGATACTGTaGGAGGTGAGTGGAGGAACCCGGAGGCTGCAAACT | + |
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Preference number: 3 (lower is better) Translates to: TNSNFSTSSWIL*EVSGGTRRLQT Trigger: AGTTTGCAGCCTCCGGGTTCCTCCACTCACCTCTCACAGTATCCAGGAGCTAGTAGAGAAGTTTGAGTTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | TTACAAACAAGTACTGTTTGTACTGGAGAAGCCCAGCCCAGTGCGTCTTCTCCATTTGGGCCTGGCTTCTaGCTTATAAGTCCACTCCAG | + |
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Preference number: 3 (lower is better) Translates to: LQTSTVCTGEAQPSASSPFGPGF*LISPLQ Trigger: CTGGAGTGGACTTATAAGCAAGAAGCCAGGCCCAAA...TGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR GCA 72 bp | GGTGTTGATACCCTTCACAATGAGAGCCCAGAGATCTaGGAAATTTGTGTGAGCACAGAATGTCCCGGAGAA | + |
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Preference number: 3 (lower is better) Translates to: GVDTLHNESPEI*EICVSTECPGE Trigger: TTCTCCGGGACATTCTGTGCTCACACAAATTTCGCAGATCTCTGGGCTCTCATTGTGAAGGGTATCAACACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | CGGAGAATAAATCCGGGCATTTTTAGGAAATGCTACACAATGCTGTTCCTTGAATCCAGGGCGGGGATATaGAGTGAACAGGAAGGGTCC | + |
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Preference number: 3 (lower is better) Translates to: RRINPGIFRKCYTMLFLESRAGI*SEQEGS Trigger: GGACCCTTCCTGTTCACTCAATATCCCCGCCCTGGA...TTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAATTCCATCGTGAAGAATaGGGATTTCGAATAGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: GAFCSPQGLSRTYRKANKFHREE*GFRIER Trigger: CCTCTCTATTCGAAATCCCAATTCTTCACGATGGAA...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR TCA 72 bp | TTCACAATGAGAGCCCAGAGATCTGCGAAATTTGTGTaGGCACAGAATGTCCCGGAGAATAAATCCGGGCAT | + |
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Preference number: 3 (lower is better) Translates to: FTMRAQRSAKFV*AQNVPENKSGH Trigger: ATGCCCGGATTTATTCTCCGGGACATTCTGTGCTCACACAAATTTCGCAGATCTCTGGGCTCTCATTGTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR GCA 72 bp | ATGTCCCGGAGAATAAATCCGGGCATTTTTAGGAAATaGTACACAATGCTGTTCCTTGAAAGGGGGAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: MSRRINPGIFRK*YTMLFLERGKG Trigger: CCCCTTCCCCCTTTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCGGGACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGAAGAGACAGAGCAGTCTaGAACCTCAAAGTTCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGRDRAV*NLKVPD Trigger: ATCTGGAACTTTGAGGTTCAAGACTGCTCTGTCTCT...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGAAGAGATCTGCGAAATTaGTGTGAGCACAGAATGTCC | + |
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Preference number: 3 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGRDLRN*CEHRMS Trigger: GGACATTCTGTGCTCACACAAATTTCGCAGATCTCT...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGATTTGGGTTTTCTTCCTaGAATCGCCGAGGTTTAAAC | + |
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Preference number: 3 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGFGFSS*NRRGLN Trigger: GTTTAAACCTCGGCGATTCAAGGAAGAAAACCCAAA...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR-3UTR CAA 90 bp | AGCTGGGTGCCCCCTTTCCAGTCTTGTTTAAAGTCTCTTTCTCAAAGTAACAAGAATCAGCAGTGTACATaGACACCCAAAGGGAACAGA | + |
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Preference number: 3 (lower is better) Translates to: SWVPPFQSCLKSLSQSNKNQQCT*TPKGNR Trigger: TCTGTTCCCTTTGGGTGTCAATGTACACTGCTGATT...CTTGTTACTTTGAGAAAGAGACTTTAAACAAGACTGGAAAGGGGGCACCCAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CCA 72 bp | AAGCAAGCTAAATTTACAAACAAGTACTGTTTGTACTaGAGAAGCCCAGCCCAGTGCGTCTTCTCCACAGAA | + |
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Preference number: 3 (lower is better) Translates to: KQAKFTNKYCLY*RSPAQCVFSTE Trigger: TTCTGTGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAAATTTAGCTTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR TCA 72 bp | TCTTTAGAGCTGTGCGGCATGTTGCACTTAGTTCTCTaGTTGCTCTATTACTTGGCAATTATATTCCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: SLELCGMLHLVL*LLYYLAIIFQL Trigger: CAGCTGGAATATAATTGCCAAGTAATAGAGCAATCAGAGAACTAAGTGCAACATGCCGCACAGCTCTAAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR GCA 72 bp | CCACACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTaGACAAACTCAAACTTCTCTACTAGCTCCTGGATA | + |
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Preference number: 3 (lower is better) Translates to: PHFLRNSKSPTS*TNSNFSTSSWI Trigger: TATCCAGGAGCTAGTAGAGAAGTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTGTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| 3UTR CCA 72 bp | TCTGATTGCTCTATTACTTGGCAATTATATTCCAGCTaGGTGCCCCCTTTCCAGTCTTGTTTAAAGTCTCTT | + |
|
Preference number: 3 (lower is better) Translates to: SDCSITWQLYSS*VPPFQSCLKSL Trigger: AAGAGACTTTAAACAAGACTGGAAAGGGGGCACCCAGCTGGAATATAATTGCCAAGTAATAGAGCAATCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| 3UTR-3UTR CAA 90 bp | CACCCACACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACATAGAGAGGAGGTTATaGCAACTATCAAAACTGATC | + |
|
Preference number: 3 (lower is better) Translates to: HPHFLRNSKSPTSCTNSNIERRL*QLSKLI Trigger: GATCAGTTTTGATAGTTGCAATAACCTCCTCTCTAT...GTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTGTGGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR GCA 90 bp | CCTCCCTGGCCAGCAGTGGGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTCCCTGTTCTCAGCACTaGGCCTGCAGTCCCCACTAC | + |
|
Preference number: 4 (lower is better) Translates to: PPWPAVGAFCSPQGLSRTPCSQH*ACSPHY Trigger: GTAGTGGGGACTGCAGGCGCAGTGCTGAGAACAGGG...AGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCCCACTGCTGGCCAGGGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR TCA 90 bp | CCTCCCTGGCCAGCAGTGGGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTGGACCAGGGCCACAATaGAAAAGGGCAGCCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: PPWPAVGAFCSPQGLSRTGPGPQ*KRAASR Trigger: TCTGCTGGCTGCCCTTTTTCATTGTGGCCCTGGTCC...AGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCCCACTGCTGGCCAGGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR GCA 90 bp | CCTCCCTGGCCAGCAGTGGGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTCAACCACGCAGGCATTaGCGAGCACCGCGCAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: PPWPAVGAFCSPQGLSRTQPRRH*RAPRRK Trigger: TTTTCTGCGCGGTGCTCGGCAATGCCTGCGTGGTTG...AGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCCCACTGCTGGCCAGGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR TCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTAGGAAGCGCGCGGCTCTaGAGATGCGCCCATAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLGSARL*RCAHRG Trigger: TCCTCTATGGGCGCATCTTCAGAGCCGCGCGCTTCC...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTACGATCACCTCCAGGGTaGCGTCGTCCTCACCCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLRSPPG*RRPHPV Trigger: GACAGGGTGAGGACGACGCCACCCTGGAGGTGATCG...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| 3UTR CAA 72 bp | GCACGCCGCAGGAGTTGGAAGCACTTAGGAGCCCTTTaGCTCCTTACCTCCTCTACGTGCCTCACACCCACA | + |
|
Preference number: 4 (lower is better) Translates to: ARRRSWKHLGAL*LLTSSTCLTPT Trigger: TGTGGGTGTGAGGCACGTAGAGGAGGTAAGGAGCAAAAGGGCTCCTAAGTGCTTCCAACTCCTGCGGCGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTAGAGGAAGGTGCCCTTTaGAGTTGCCCACTCGATGCA | + |
|
Preference number: 4 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLEEGAL*SCPLDA Trigger: TGCATCGAGTGGGCAACTCCAAAGGGCACCTTCCTC...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTACGAAAGTGGAGTAGATaGTGTACCCGTGGTCCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLRKWSR*CTRGPC Trigger: GCAAGGACCACGGGTACACCATCTACTCCACTTTCG...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR TCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTATCTTTTCCACCTTCTTaGCCGTCTTGCGGATTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLSFPPS*PSCGFG Trigger: TCCGAATCCGCAAGACGGTCAAGAAGGTGGAAAAGA...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR GCA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAAGCAGGATGGACGAAGTaGAGCACAGCACATCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: GAFCSPQGLSRTYRKANKAGWTK*STAHPG Trigger: CCCTGGATGTGCTGTGCTGCACTTCGTCCATCCTGC...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | GAAGCACTTAGGAGCCCTTTTGCTCCTTACCTCCTCTACGTGCCTCACACCCACGTGGTGTTGTTGCCCTaGCCAAGACTGAACATATCC | + |
|
Preference number: 4 (lower is better) Translates to: EALRSPFAPYLLYVPHTHVVLLP*PRLNIS Trigger: GGATATGTTCAGTCTTGGCCAGGGCAACAACACCAC...GTGGGTGTGAGGCACGTAGAGGAGGTAAGGAGCAAAAGGGCTCCTAAGTGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR TCA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAACCAGAGTCCACTTGTTaGGCACCTGGTACAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GAFCSPQGLSRTYRKANKPESTC*APGTEQ Trigger: CTGCTCTGTACCAGGTGCTCAACAAGTGGACTCTGG...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | TTACAAACAAGTACTGTTTGTACTGGAGAAGCCCAGCCCAGTGCGTCTTCTCCACACTTGTTGAGCACCTaGTACAGAGCAGCCATGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LQTSTVCTGEAQPSASSPHLLST*YRAAMG Trigger: GCCCATGGCTGCTCTGTACCAGGTGCTCAACAAGTG...TGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | TTACAAACAAGTACTGTTTGTACTGGAGAAGCCCAGCCCAGTGCGTCTTCTCCAGCAGTCCCCACTACCTaGCTGACCATTCAGGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LQTSTVCTGEAQPSASSPAVPTT*LTIQAL Trigger: AAGAGCCTGAATGGTCAGCCAGGTAGTGGGGACTGC...TGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR TCA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGAATAGGAGGTAGCTCCTaGTTCGCTGGGCAGAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGIGGSS*FAGQRK Trigger: CTTCCTCTGCCCAGCGAATCAGGAGCTACCTCCTAT...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR GCA 90 bp | CACCCACACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACGGGCCAAGGCCATCTTaGGCTTTGCCTCAGCAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: HPHFLRNSKSPTSCTNSNGPRPS*ALPQQC Trigger: GCACTGCTGAGGCAAAGCGCAAGATGGCCTTGGCCC...GTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTGTGGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR GCA 90 bp | AGCTGGGTGCCCCCTTTCCAGTCTTGTTTAAAGTCTCTTTCTCAAAGTAACAAGGGCCATCTTGCGCTTTaGCTCAGCAGTGCGCTCATT | + |
|
Preference number: 4 (lower is better) Translates to: SWVPPFQSCLKSLSQSNKGHLAL*LSSALI Trigger: AATGAGCGCACTGCTGAGGCAAAGCGCAAGATGGCC...CTTGTTACTTTGAGAAAGAGACTTTAAACAAGACTGGAAAGGGGGCACCCAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | CGGAGAATAAATCCGGGCATTTTTAGGAAATGCTACACAATGCTGTTCCTTGAAACCTGTCTAGCGCGATaGCGCACAGGTGCAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: RRINPGIFRKCYTMLFLETCLAR*RTGAGW Trigger: CCATCCTGCACCTGTGCGCCATCGCGCTAGACAGGT...TTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCCACAGAACCCCCTGTCAGTCTCTCAGGTGTGGACACCCTACAGGCTTAATAAGCATAAATAACTaGGTTGAGCAGGGAGTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LLHRTPCQSLRCGHPTGLISINN*VEQGVG Trigger: TCCAACTCCCTGCTCAACCCAGTTATTTATGCTTAT...TAAGCCTGTAGGGTGTCCACACCTGAGAGACTGACAGGGGGTTCTGTGGAGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR TCA 90 bp | CACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACTTCTCTGGGCAGCACCAGCACTaGCACCATGAGATCGGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: HFLRNSKSPTSCTNSNFSGQHQH*HHEIGD Trigger: GTCACCGATCTCATGGTGTCAGTGCTGGTGCTGCCC...AGAGAAGTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR GCA 90 bp | CGGAGAATAAATCCGGGCATTTTTAGGAAATGCTACACAATGCTGTTCCTTGAAGAGTTGCCCACTCGATaGACCTCGATCACCTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RRINPGIFRKCYTMLFLEELPTR*TSITSR Trigger: CCTGGAGGTGATCGAGGTGCATCGAGTGGGCAACTC...TTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CCA 90 bp | TTACAAACAAGTACTGTTTGTACTGGAGAAGCCCAGCCCAGTGCGTCTTCTCCAAACAACTCAGGCATGTaGCAACTGCTCTCACAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LQTSTVCTGEAQPSASSPNNSGM*QLLSQK Trigger: TTTCTGTGAGAGCAGTTGCCACATGCCTGAGTTGTT...TGGAGAAGACGCACTGGGCTGGGCTTCTCCAGTACAAACAGTACTTGTTTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| 3UTR CAA 72 bp | GGACACCCTACAGGCTTACATTCTGAAATGGCTCTGTaGCAAGGGACTGTAATACTCATTCCCACTTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: GHPTGLHSEMAL*QGTVILIPTLE Trigger: CTCTAAAGTGGGAATGAGTATTACAGTCCCTTGCAACAGAGCCATTTCAGAATGTAAGCCTGTAGGGTGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR GCA 90 bp | CGGAGAATAAATCCGGGCATTTTTAGGAAATGCTACACAATGCTGTTCCTTGAACAGGCATGTGGCAACTaGTCTCACAGAAAGGTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: RRINPGIFRKCYTMLFLEQACGN*SHRKVG Trigger: TCCTACCTTTCTGTGAGAGCAGTTGCCACATGCCTG...TTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| 3UTR CAA 72 bp | CCATACAGTTTATATTTTCTGTTTGGGTTTTCTTCCTaGAATCGCCGAGGTTTAAACTTCCATCGTGAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: PYSLYFLFGFSS*NRRGLNFHREE Trigger: TTCTTCACGATGGAAGTTTAAACCTCGGCGATTCAAGGAAGAAAACCCAAACAGAAAATATAAACTGTATGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| 3UTR CAA 72 bp | CAGAAAATTCGAAGTTCAGATATAACGCAAAACCATTaGATGCCCTCTCACTTAGCTAGAAATGTACATTCA | + |
|
Preference number: 4 (lower is better) Translates to: QKIRSSDITQNH*MPSHLARNVHS Trigger: TGAATGTACATTTCTAGCTAAGTGAGAGGGCATCAAATGGTTTTGCGTTATATCTGAACTTCGAATTTTCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS GCA 90 bp | GATTCGCTGGGCAGAGGAAGGTGCCCTTTGGAGTTGCCCACTCGATaGACCTCGATCACCTCCAGGGTGGCGTCGTCCTCACCCTGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: DSLGRGRCPLELPTR*TSITSRVASSSPCL Trigger: GAGACAGGGTGAGGACGACGCCACCCTGGAGGTGATCGAGGTGCATCGAGTGGGCAACTCCAAAGGGCACCTTCCTCTGCCCAGCGAATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | CCTCCCTGGCCAGCAGTGGGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTCTGATGGTGCACTCGTaGGGGTTCGAGCGGTCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: PPWPAVGAFCSPQGLSRTLMVHS*GFERSS Trigger: GGAAGACCGCTCGAACCCCAACGAGTGCACCATCAG...AGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCCCACTGCTGGCCAGGGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS TCA 90 bp | AGAAAGCGCCGAAAGTGGAGTAGATGGTGTACCCGTGGTCCTTGCTaGTGGTGCACTCGTTGGGGTTCGAGCGGTCTTCCGGGGTGCGCC | + |
|
Preference number: 5 (lower is better) Translates to: RKRRKWSRWCTRGPC*WCTRWGSSGLPGCA Trigger: GGCGCACCCCGGAAGACCGCTCGAACCCCAACGAGTGCACCATCAGCAAGGACCACGGGTACACCATCTACTCCACTTTCGGCGCTTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | CCTCCCTGGCCAGCAGTGGGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTTCTTTTCCACCTTCTaGACCGTCTTGCGGATTCGG | + |
|
Preference number: 5 (lower is better) Translates to: PPWPAVGAFCSPQGLSRTFFSTF*TVLRIR Trigger: CCGAATCCGCAAGACGGTCAAGAAGGTGGAAAAGAA...AGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCCCACTGCTGGCCAGGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS TCA 90 bp | GTGCAGCACAGCACATCCAGGGCGATAAACAGGTCACAGGTGACCTaGCCCAGAGTCCACTTGTTGAGCACCTGGTACAGAGCAGCCATG | + |
|
Preference number: 5 (lower is better) Translates to: VQHSTSRAINRSQVT*PRVHLLSTWYRAAM Trigger: CATGGCTGCTCTGTACCAGGTGCTCAACAAGTGGACTCTGGGTCAGGTCACCTGTGACCTGTTTATCGCCCTGGATGTGCTGTGCTGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | GAAGCACTTAGGAGCCCTTTTGCTCCTTACCTCCTCTACGTGCCTCACACCCACAGAGGAAGGTGCCCTTaGGAGTTGCCCACTCGATGC | + |
|
Preference number: 5 (lower is better) Translates to: EALRSPFAPYLLYVPHTHRGRCP*ELPTRC Trigger: GCATCGAGTGGGCAACTCCAAAGGGCACCTTCCTCT...GTGGGTGTGAGGCACGTAGAGGAGGTAAGGAGCAAAAGGGCTCCTAAGTGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | GAAGCACTTAGGAGCCCTTTTGCTCCTTACCTCCTCTACGTGCCTCACACCCACAGGCCATCTTGCGCTTaGCCTCAGCAGTGCGCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: EALRSPFAPYLLYVPHTHRPSCA*PQQCAH Trigger: ATGAGCGCACTGCTGAGGCAAAGCGCAAGATGGCCT...GTGGGTGTGAGGCACGTAGAGGAGGTAAGGAGCAAAAGGGCTCCTAAGTGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | CTGTGCATTGGGGAAAGGGATCTTTTGCTATTCAGCAAGGCAAACAATTCCAGGGCAACCACGCAGGCATaGCCGAGCACCGCGCAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: LCIGERDLLLFSKANNSRATTQA*PSTAQK Trigger: TTTCTGCGCGGTGCTCGGCAATGCCTGCGTGGTTGC...CCTGGAATTGTTTGCCTTGCTGAATAGCAAAAGATCCCTTTCCCCAATGCACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | GGCGCCTTCTGCAGTCCACAAGGCCTTTCCAGAACTTACAGAAAAGCCAACAAAGACGTTGTGGTGTTGTaGCCCTGGCCAAGACTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: GAFCSPQGLSRTYRKANKDVVVL*PWPRLN Trigger: GTTCAGTCTTGGCCAGGGCAACAACACCACAACGTC...TTTGTTGGCTTTTCTGTAAGTTCTGGAAAGGCCTTGTGGACTGCAGAAGGCGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | AAAGTAACAAGAGCAATGCCCCTCCCCCATCACGGTCAAACATTCCTAATTGGACCCAGAGTCCACTTGTaGAGCACCTGGTACAGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: KVTRAMPLPHHGQTFLIGPRVHL*STWYRA Trigger: TGCTCTGTACCAGGTGCTCAACAAGTGGACTCTGGG...TCCAATTAGGAATGTTTGACCGTGATGGGGGAGGGGCATTGCTCTTGTTACTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | CACCCACACTTCCTTAGAAATTCTAAGTCTCCAACCTCTTGCACAAACTCAAACACCTTCTTGACCGTCTaGCGGATTCGGAAGCGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: HPHFLRNSKSPTSCTNSNTFLTV*RIRKRA Trigger: CGCGCGCTTCCGAATCCGCAAGACGGTCAAGAAGGT...GTTTGAGTTTGTGCAAGAGGTTGGAGACTTAGAATTTCTAAGGAAGTGTGGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS-3UTR CAA 90 bp | CGGAGAATAAATCCGGGCATTTTTAGGAAATGCTACACAATGCTGTTCCTTGAAAAGAGAGGTGATCACTaGGTAGCTGAAGGTCACGTT | + |
|
Preference number: 5 (lower is better) Translates to: RRINPGIFRKCYTMLFLEKRGDH*VAEGHV Trigger: AACGTGACCTTCAGCTACCAAGTGATCACCTCTCTT...TTCAAGGAACAGCATTGTGTAGCATTTCCTAAAAATGCCCGGATTTATTCTCCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS CAA 72 bp | GAGCGCTCCAGGGCGATGGCAGCAACCACGCAGGCATaGCCGAGCACCGCGCAGAAAATGAGCGTCCCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ERSRAMAATTQA*PSTAQKMSVPS Trigger: GCTGGGGACGCTCATTTTCTGCGCGGTGCTCGGCAATGCCTGCGTGGTTGCTGCCATCGCCCTGGAGCGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS CCA 72 bp | AGTTGGCAACATTCTGAAGGGAGCGCTCCAGGGCGATaGCAGCAACCACGCAGGCATTGCCGAGCACCGCGC | + |
|
Preference number: 6 (lower is better) Translates to: SWQHSEGSAPGR*QQPRRHCRAPR Trigger: GCGCGGTGCTCGGCAATGCCTGCGTGGTTGCTGCCATCGCCCTGGAGCGCTCCCTTCAGAATGTTGCCAACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS GCA 72 bp | GGCAGAGGAAGGTGCCCTTTGGAGTTGCCCACTCGATaGACCTCGATCACCTCCAGGGTGGCGTCGTCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: GRGRCPLELPTR*TSITSRVASSS Trigger: TGAGGACGACGCCACCCTGGAGGTGATCGAGGTGCATCGAGTGGGCAACTCCAAAGGGCACCTTCCTCTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS CAA 72 bp | CCGAAGCTGGTGCCCGCTCCCTTCTTTTCCACCTTCTaGACCGTCTTGCGGATTCGGAAGCGCGCGGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: PKLVPAPFFSTF*TVLRIRKRAAL Trigger: CAGAGCCGCGCGCTTCCGAATCCGCAAGACGGTCAAGAAGGTGGAAAAGAAGGGAGCGGGCACCAGCTTCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS GCA 72 bp | CTGATTCGCTGGGCAGAGGAAGGTGCCCTTTGGAGTTaGCCACTCGATGCACCTCGATCACCTCCAGGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: LIRWAEEGALWS*PLDAPRSPPGW Trigger: CCACCCTGGAGGTGATCGAGGTGCATCGAGTGGGCAACTCCAAAGGGCACCTTCCTCTGCCCAGCGAATCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS CAA 72 bp | GTGCCCGCTCCCTTCTTTTCCACCTTCTTGACCGTCTaGCGGATTCGGAAGCGCGCGGCTCTGAAGATGCGC | + |
|
Preference number: 6 (lower is better) Translates to: VPAPFFSTFLTV*RIRKRAALKMR Trigger: GCGCATCTTCAGAGCCGCGCGCTTCCGAATCCGCAAGACGGTCAAGAAGGTGGAAAAGAAGGGAGCGGGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
||
| CDS CAA 72 bp | CCTGATTCGCTGGGCAGAGGAAGGTGCCCTTTGGAGTaGCCCACTCGATGCACCTCGATCACCTCCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: PDSLGRGRCPLE*PTRCTSITSRV Trigger: CACCCTGGAGGTGATCGAGGTGCATCGAGTGGGCAACTCCAAAGGGCACCTTCCTCTGCCCAGCGAATCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| CDS CAA 90 bp | GACGATGTTCCGAAGCTGGTGCCCGCTCCCTTCTTTTCCACCTTCTaGACCGTCTTGCGGATTCGGAAGCGCGCGGCTCTGAAGATGCGC | + |
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Preference number: 6 (lower is better) Translates to: DDVPKLVPAPFFSTF*TVLRIRKRAALKMR Trigger: GCGCATCTTCAGAGCCGCGCGCTTCCGAATCCGCAAGACGGTCAAGAAGGTGGAAAAGAAGGGAGCGGGCACCAGCTTCGGAACATCGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| CDS TCA 72 bp | CGAAAGTGGAGTAGATGGTGTACCCGTGGTCCTTGCTaGTGGTGCACTCGTTGGGGTTCGAGCGGTCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: RKWSRWCTRGPC*WCTRWGSSGLP Trigger: CGGAAGACCGCTCGAACCCCAACGAGTGCACCATCAGCAAGGACCACGGGTACACCATCTACTCCACTTTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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| CDS CCA 72 bp | AGCCAGTTAATTATGGCACCCAACAACTCAGGCATGTaGCAACTGCTCTCACAGAAAGGTAGGACCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SQLIMAPNNSGM*QLLSQKGRTRA Trigger: GGCCCTGGTCCTACCTTTCTGTGAGAGCAGTTGCCACATGCCTGAGTTGTTGGGTGCCATAATTAACTGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022235.6 |
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