Pregenerated sensors for HTATSF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067873Ensembl transcript IDs: ENSMUST00000088652.6, ENSMUST00000114751.9
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTAATGGGCAAATGGAGATaGAGGGCTCTCCCTAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: DISQMASYHYAHVAVTLLMGKWR*RALPKK Trigger: CTTCTTAGGGAGAGCCCTGCATCTCCATTTGCCCAT...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| 3UTR-3UTR TCA 90 bp | ATTTTTACACTCTTGATTACATACACTGAGGAAGAGGTCTTTGCAGTGAAATTCAGTCAGGCGGATTTCTaGGTTCGAGGCCAGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: IFTLLITYTEEEVFAVKFSQADF*VRGQPG Trigger: ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGACT...GAATTTCACTGCAAAGACCTCTTCCTCAGTGTATGTAATCAAGAGTGTAAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| 3UTR-3UTR TCA 90 bp | AGCAGTCACGACTTTGCTAGACTCCATTCCAGTTCACTCCAATGTGCAAATAAACTTGATTACATACACTaGGGAAGAGGTCTTTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: SSHDFARLHSSSLQCANKLDYIH*GRGLCS Trigger: ACTGCAAAGACCTCTTCCTCAGTGTATGTAATCAAG...TTTATTTGCACATTGGAGTGAACTGGAATGGAGTCTAGCAAAGTCGTGACTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| 3UTR TCA 72 bp | ATCCCAGCACTACGGAGGCAGAGTCAGGCGGATTTCTaGGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: IPALRRQSQADF*VRGQPGLQSEF Trigger: GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGACTCTGCCTCCGTAGTGCTGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| 3UTR CCA 72 bp | ACATGTTGCTGTAACACTACTATTGACCCTGAAGCATaGGCAAATGGAGATGCAGGGCTCTCCCTAAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: TCCCNTTIDPEA*ANGDAGLSLRS Trigger: GCTTCTTAGGGAGAGCCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | GAAATTCTTGAAGATAAGAGAAGCCCCTCGCCGGGCGTGGTGGAACACGCCTTTGGTTGTCCCAAAGAATaGGCTTCTCCAGAGGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: EILEDKRSPSPGVVEHAFGCPKE*ASPEGS Trigger: TGAGCCCTCTGGAGAAGCCCATTCTTTGGGACAACC...AAAGGCGTGTTCCACCACGCCCGGCGAGGGGCTTCTCTTATCTTCAAGAATTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR TCA 90 bp | ACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTATGGCCTCAGGAGCATTaGGGAATGCCTCCCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: TLRDISQMASYHYAHVAVWPQEH*GMPPSL Trigger: GAGGCTGGGAGGCATTCCTCAATGCTCCTGAGGCCA...TACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | GAAATTCTTGAAGATAAGAGAAGCCCCTCGCCGGGCGTGGTGGAACACGCCTTTGGGTGTCACCTTCCTTaGGGTCTCCTCCATACAATT | + |
|
Preference number: 4 (lower is better) Translates to: EILEDKRSPSPGVVEHAFGCHLP*GLLHTI Trigger: AATTGTATGGAGGAGACCCCAAGGAAGGTGACACCC...AAAGGCGTGTTCCACCACGCCCGGCGAGGGGCTTCTCTTATCTTCAAGAATTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR CCA 90 bp | ACGGAGGCAGAGTCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGGTAAGGAGTGTCATCTaGTGGTTGTCCCAAAGAATG | + |
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Preference number: 4 (lower is better) Translates to: TEAESGGFLSSRPAWSTKVRSVI*WLSQRM Trigger: CATTCTTTGGGACAACCACCAGATGACACTCCTTAC...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGACTCTGCCTCCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR CCA 90 bp | CTGGTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCATGACAACTCGCTCATaGCGCAGCCGGTTTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LVQVRTKPFETLVRWHPTMTTRS*RSRFGP Trigger: TGGACCAAACCGGCTGCGCCATGAGCGAGTTGTCAT...GGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| 3UTR CAA 72 bp | ACATACACTGAGGAAGAGGTCTTTGCAGTGAAATTCTaGAAGATAAGAGAAGCCCCTCGCCGGGCGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: TYTEEEVFAVKF*KIREAPRRAWW Trigger: CCACCACGCCCGGCGAGGGGCTTCTCTTATCTTCAAGAATTTCACTGCAAAGACCTCTTCCTCAGTGTATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR TCA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTAGTCCCATCCCAGGCTTaGGCAGTGATCTGTCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: DISQMASYHYAHVAVTLLVPSQA*AVICRP Trigger: TGGCCGACAGATCACTGCTCAAGCCTGGGATGGGAC...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | TGTTGCTGTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGCTTCCGACTCTTTCTTaGGGCTGTCTTCCCCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: CCCNTTIDPEAWANGDAGLPTLS*GCLPLQ Trigger: CTGAAGGGGAAGACAGCCTCAAGAAAGAGTCGGAAG...CCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR GCA 90 bp | GAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATAGGAGCATTGAGGAATaGCTCCCAGCCTCTCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: ENKTLRDISQMASYHYAHRSIEE*LPASQP Trigger: CGGCTGAGAGGCTGGGAGGCATTCCTCAATGCTCCT...ATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | GTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGCTCTCCCAGAGGCCACACCATCTaGGTGTCTATCAAACAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: VTLLLTLKHGQMEMQGSPRGHTI*VSIKQK Trigger: CTTCTGTTTGATAGACACCCAGATGGTGTGGCCTCT...GGGAGAGCCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | TGTTGCTGTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGATGGTCAGCCTCCTCTaGCTCTCTGAAGGACACAGA | + |
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Preference number: 4 (lower is better) Translates to: CCCNTTIDPEAWANGDAGMVSLL*LSEGHR Trigger: TCTGTGTCCTTCAGAGAGCCAGAGGAGGCTGACCAT...CCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | ACGGAGGCAGAGTCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGAATTTGGACATGAGCTaGATAAATTCATCCACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: TEAESGGFLSSRPAWSTKNLDMS*INSSTV Trigger: CACAGTGGATGAATTTATTCAGCTCATGTCCAAATT...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGACTCTGCCTCCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR GCA 90 bp | GAAATTCTTGAAGATAAGAGAAGCCCCTCGCCGGGCGTGGTGGAACACGCCTTTTCTTGCATTCGCAATTaGTCATCAAACTCATCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: EILEDKRSPSPGVVEHAFSCIRN*SSNSSF Trigger: GAACGATGAGTTTGATGAGCAATTGCGAATGCAAGA...AAAGGCGTGTTCCACCACGCCCGGCGAGGGGCTTCTCTTATCTTCAAGAATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR GCA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTCCCCTTCAGACTCCTTaGCAAGGTCATTGTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: VQVRTKPFETLVRWHPTTPLQTP*QGHCLQ Trigger: CTGAAGACAATGACCTTGGCAAGGAGTCTGAAGGGG...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | ACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAAGGAGTGTCATCTGGTaGTTGTCCCAAAGAATGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TLRDISQMASYHYAHVAVRSVIW*LSQRMG Trigger: GCCCATTCTTTGGGACAACCACCAGATGACACTCCT...TACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | CTGGTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCTATTCACCCTTGAGCTaGAACTTTGCCACCTCCACA | + |
|
Preference number: 4 (lower is better) Translates to: LVQVRTKPFETLVRWHPTYSPLS*NFATST Trigger: TGTGGAGGTGGCAAAGTTCCAGCTCAAGGGTGAATA...GGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTACCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | TGTTGCTGTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGCTTCATTCTCTTTCTTaGAGCAGCCTTCTCCACCCT | + |
|
Preference number: 4 (lower is better) Translates to: CCCNTTIDPEAWANGDAGLHSLS*SSLLHP Trigger: AGGGTGGAGAAGGCTGCTCCAAGAAAGAGAATGAAG...CCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTCAAAGCTGCTGTCTGTaGACTGAGACCCATCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: VQVRTKPFETLVRWHPTTQSCCL*TETHLP Trigger: AGGAAGATGGGTCTCAGTCCACAGACAGCAGCTTTG...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | GAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATCATCGTATTCACCCTTaGGCTGGAACTTTGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: ENKTLRDISQMASYHYAHHRIHP*AGTLPP Trigger: AGGTGGCAAAGTTCCAGCTCAAGGGTGAATACGATG...ATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR GCA 90 bp | CTGGTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCCTTGAGCTGGAACTTTaGCACCTCCACATGCAATTT | + |
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Preference number: 4 (lower is better) Translates to: LVQVRTKPFETLVRWHPTLELEL*HLHMQF Trigger: AAATTGCATGTGGAGGTGGCAAAGTTCCAGCTCAAG...GGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTACCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTAGGTTGTCCCAAAGAATaGGCTTCTCCAGAGGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: DISQMASYHYAHVAVTLLGCPKE*ASPEGS Trigger: TGAGCCCTCTGGAGAAGCCCATTCTTTGGGACAACC...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | TGTTGCTGTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGGTAAGGAGTGTCATCTaGTGGTTGTCCCAAAGAATG | + |
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Preference number: 4 (lower is better) Translates to: CCCNTTIDPEAWANGDAGVRSVI*WLSQRM Trigger: CATTCTTTGGGACAACCACCAGATGACACTCCTTAC...CCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | GTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGCTCTCCCTCAAAGTCCATGGGGTaGAACATATTTTTGAGAATG | + |
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Preference number: 4 (lower is better) Translates to: VTLLLTLKHGQMEMQGSPSKSMG*NIFLRM Trigger: CATTCTCAAAAATATGTTTCACCCCATGGACTTTGA...GGGAGAGCCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTCTCGCAGATCTTCTCTaGTCTCATTCAGTACCAATG | + |
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Preference number: 4 (lower is better) Translates to: VQVRTKPFETLVRWHPTTLADLL*SHSVPM Trigger: CATTGGTACTGAATGAGATCAGAGAAGATCTGCGAG...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTAGGGTGTCACCTTCCTTaGGGTCTCCTCCATACAATT | + |
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Preference number: 4 (lower is better) Translates to: DISQMASYHYAHVAVTLLGCHLP*GLLHTI Trigger: AATTGTATGGAGGAGACCCCAAGGAAGGTGACACCC...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | ACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTATTGAGATTGCTTTTCTaGGCTGTCTTCCTCAGATTC | + |
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Preference number: 4 (lower is better) Translates to: TLRDISQMASYHYAHVAVLRLLF*AVFLRF Trigger: GAATCTGAGGAAGACAGCTCAGAAAAGCAATCTCAA...TACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR GCA 90 bp | TGTTGCTGTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGTCTTGCATTCGCAATTaGTCATCAAACTCATCGTTC | + |
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Preference number: 4 (lower is better) Translates to: CCCNTTIDPEAWANGDAGSCIRN*SSNSSF Trigger: GAACGATGAGTTTGATGAGCAATTGCGAATGCAAGA...CCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | TGTTGCTGTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGAATTTGGACATGAGCTaGATAAATTCATCCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: CCCNTTIDPEAWANGDAGNLDMS*INSSTV Trigger: CACAGTGGATGAATTTATTCAGCTCATGTCCAAATT...CCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTACATACTTGGGTGCTCTaGAAAATGCCTCATTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: DISQMASYHYAHVAVTLLHTWVL*KMPHSG Trigger: TCCAGAATGAGGCATTTTTCAGAGCACCCAAGTATG...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTACTGTCTTCTTCAACATaGAACCATCCAGATTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: DISQMASYHYAHVAVTLLLSSST*NHPDSA Trigger: GGCTGAATCTGGATGGTTCCATGTTGAAGAAGACAG...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | AGCAGTCACGACTTTGCTAGACTCCATTCCAGTTCACTCCAATGTGCAAATAAACTGTCTTCTTCAACATaGAACCATCCAGATTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SSHDFARLHSSSLQCANKLSSST*NHPDSA Trigger: GGCTGAATCTGGATGGTTCCATGTTGAAGAAGACAG...TTTATTTGCACATTGGAGTGAACTGGAATGGAGTCTAGCAAAGTCGTGACTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR CCA 90 bp | ACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTACAAACAACTTCTCATTaGGACCTTCTTCCTCATCAA | + |
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Preference number: 4 (lower is better) Translates to: TLRDISQMASYHYAHVAVQTTSH*DLLPHQ Trigger: TTGATGAGGAAGAAGGTCCCAATGAGAAGTTGTTTG...TACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR TCA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTGTCTTCAGACTCTTTTaGAAAGCCATTCTTCTCATA | + |
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Preference number: 4 (lower is better) Translates to: VQVRTKPFETLVRWHPTTVFRLF*KAILLI Trigger: TATGAGAAGAATGGCTTTTCAAAAGAGTCTGAAGAC...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| 3UTR CAA 72 bp | AAACTGTATTTGCAAAAACAGACAGCAGTCACGACTTaGCTAGACTCCATTCCAGTTCACTCCAATGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: KLYLQKQTAVTT*LDSIPVHSNVQ Trigger: TTGCACATTGGAGTGAACTGGAATGGAGTCTAGCAAAGTCGTGACTGCTGTCTGTTTTTGCAAATACAGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
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| CDS-3UTR TCA 90 bp | CAACAAAATGACAGATATCCAGTTTACTTGCATGGTAACTGTGAAGTTTTGAACCTCCTCTCTTTCTCTTaGGGTCTCCTCTACCTGATA | + |
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Preference number: 4 (lower is better) Translates to: QQNDRYPVYLHGNCEVLNLLSFS*GLLYLI Trigger: TATCAGGTAGAGGAGACCTCAAGAGAAAGAGAGGAG...GTTCAAAACTTCACAGTTACCATGCAAGTAAACTGGATATCTGTCATTTTGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CCA 90 bp | CAACAAAATGACAGATATCCAGTTTACTTGCATGGTAACTGTGAAGTTTTGAACGAATCTGCCCAAACTTaGAACATTCTACTCGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: QQNDRYPVYLHGNCEVLNESAQT*NILLAD Trigger: ATCTGCGAGTAGAATGTTCCAAGTTTGGGCAGATTC...GTTCAAAACTTCACAGTTACCATGCAAGTAAACTGGATATCTGTCATTTTGTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS TCA 90 bp | CGATGGAATCCATCCGCCGGAGGCCTCTGCTGGCCTCAGGAGCATTaGGGAATGCCTCCCAGCCTCTCAGCCGCTCCTCTCTTTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: RWNPSAGGLCWPQEH*GMPPSLSAAPLFLL Trigger: CAAGAGAAAGAGAGGAGCGGCTGAGAGGCTGGGAGGCATTCCTCAATGCTCCTGAGGCCAGCAGAGGCCTCCGGCGGATGGATTCCATCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS CCA 90 bp | GTCAGCCTCCTCTGGCTCTCTGAAGGACACAGAGGCCACACCATCTaGGTGTCTATCAAACAGAAGGAGCTTCCGAATCTGCCCAAACTT | + |
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Preference number: 5 (lower is better) Translates to: VSLLWLSEGHRGHTI*VSIKQKELPNLPKL Trigger: AAGTTTGGGCAGATTCGGAAGCTCCTTCTGTTTGATAGACACCCAGATGGTGTGGCCTCTGTGTCCTTCAGAGAGCCAGAGGAGGCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CAA 90 bp | CTGGTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCAGTCCCATCCCAGGCTaGAGCAGTGATCTGTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: LVQVRTKPFETLVRWHPTSPIPG*SSDLSA Trigger: GGCCGACAGATCACTGCTCAAGCCTGGGATGGGACT...GGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS-3UTR CAA 90 bp | ACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTACTGGCCTCAGGAGCATaGAGGAATGCCTCCCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: TLRDISQMASYHYAHVAVLASGA*RNASQP Trigger: AGGCTGGGAGGCATTCCTCAATGCTCCTGAGGCCAG...TACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS CCA 90 bp | TCTGGTGGTTGTCCCAAAGAATGGGCTTCTCCAGAGGGCTCATTCTaGGTGTCACCTTCCTTGGGGTCTCCTCCATACAATTCTTGCATT | + |
|
Preference number: 5 (lower is better) Translates to: SGGCPKEWASPEGSF*VSPSLGSPPYNSCI Trigger: AATGCAAGAATTGTATGGAGGAGACCCCAAGGAAGGTGACACCCAGAATGAGCCCTCTGGAGAAGCCCATTCTTTGGGACAACCACCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CCA 90 bp | GAACCAAGCCTTCTTATCAAGGTCCCACTCGTAAGGAGTGTCATCTaGTGGTTGTCCCAAAGAATGGGCTTCTCCAGAGGGCTCATTCTG | + |
|
Preference number: 5 (lower is better) Translates to: EPSLLIKVPLVRSVI*WLSQRMGFSRGLIL Trigger: CAGAATGAGCCCTCTGGAGAAGCCCATTCTTTGGGACAACCACCAGATGACACTCCTTACGAGTGGGACCTTGATAAGAAGGCTTGGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS-3UTR CAA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTACATGGCGCAGCCGGTTaGGTCCAGCTCGTCTCTCAG | + |
|
Preference number: 5 (lower is better) Translates to: DISQMASYHYAHVAVTLLHGAAG*VQLVSQ Trigger: CTGAGAGACGAGCTGGACCAAACCGGCTGCGCCATG...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | GTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGCTCTCCCTCCCCTTCAGACTCCTaGCCAAGGTCATTGTCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: VTLLLTLKHGQMEMQGSPSPSDS*PRSLSS Trigger: TGAAGACAATGACCTTGGCAAGGAGTCTGAAGGGGA...GGGAGAGCCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS TCA 90 bp | TCATCATCATCACTACTACTGAGGGCAAAGCTGCTGTCTGTGGACTaGGACCCATCTTCCTTCACATTCCCCACAGTCCCTCTCTCATCA | + |
|
Preference number: 5 (lower is better) Translates to: SSSSLLLRAKLLSVD*DPSSFTFPTVPLSS Trigger: TGATGAGAGAGGGACTGTGGGGAATGTGAAGGAAGATGGGTCTCAGTCCACAGACAGCAGCTTTGCCCTCAGTAGTAGTGATGATGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CCA 90 bp | ACTTCTTTTTGTGGAGGTTCTTCTACAGCCTTAGTGTTGGCGTCCTaGACGTTCGCAGTAGAGCTGGATGCACCATCACTAGAAAAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: TSFCGGSSTALVLAS*TFAVELDAPSLEKP Trigger: CGGCTTTTCTAGTGATGGTGCATCCAGCTCTACTGCGAACGTCCAGGACGCCAACACTAAGGCTGTAGAAGAACCTCCACAAAAAGAAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS-3UTR CAA 90 bp | ACGGAGGCAGAGTCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTTCTTGCATTCGCAATaGCTCATCAAACTCATCGTT | + |
|
Preference number: 5 (lower is better) Translates to: TEAESGGFLSSRPAWSTKFLHSQ*LIKLIV Trigger: AACGATGAGTTTGATGAGCAATTGCGAATGCAAGAA...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGACTCTGCCTCCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
||
| CDS-3UTR CAA 90 bp | TGTTGCTGTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGTGGGTGTCACCTTCCTaGGGGTCTCCTCCATACAAT | + |
|
Preference number: 5 (lower is better) Translates to: CCCNTTIDPEAWANGDAGWVSPS*GSPPYN Trigger: ATTGTATGGAGGAGACCCCAAGGAAGGTGACACCCA...CCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTACAGCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CCA 90 bp | AAACATATTTTTGAGAATGACAACTCGCTCATGGCGCAGCCGGTTTaGTCCAGCTCGTCTCTCAGGTCTCCAATCCAACTGCTTCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: KHIFENDNSLMAQPV*SSSSLRSPIQLLLL Trigger: CAACAGAAGCAGTTGGATTGGAGACCTGAGAGACGAGCTGGACCAAACCGGCTGCGCCATGAGCGAGTTGTCATTCTCAAAAATATGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | CTGGTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCTCTTCATTCTCTTTCTaGGAGCAGCCTTCTCCACCC | + |
|
Preference number: 5 (lower is better) Translates to: LVQVRTKPFETLVRWHPTSSFSF*EQPSPP Trigger: GGGTGGAGAAGGCTGCTCCAAGAAAGAGAATGAAGA...GGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS GCA 90 bp | TCATTCTGGGTGTCACCTTCCTTGGGGTCTCCTCCATACAATTCTTaGATTCGCAATTGCTCATCAAACTCATCGTTCCCGCTCAAGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SFWVSPSLGSPPYNS*IRNCSSNSSFPLKL Trigger: CAACTTGAGCGGGAACGATGAGTTTGATGAGCAATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAAGGAAGGTGACACCCAGAATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS GCA 90 bp | GCCACACCATCTGGGTGTCTATCAAACAGAAGGAGCTTCCGAATCTaGCCAAACTTGGAACATTCTACTCGCAGATCTTCTCTGATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: ATPSGCLSNRRSFRI*PNLEHSTRRSSLIS Trigger: TGAGATCAGAGAAGATCTGCGAGTAGAATGTTCCAAGTTTGGGCAGATTCGGAAGCTCCTTCTGTTTGATAGACACCCAGATGGTGTGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | GAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATGCTCCTCTCTTTCTCTaGAGGTCTCCTCTACCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: ENKTLRDISQMASYHYAHAPLFL*RSPLPD Trigger: ATCAGGTAGAGGAGACCTCAAGAGAAAGAGAGGAGC...ATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | GACATTAGTCAGATGGCATCCTACCACTATGCACATGTTGCTGTAACACTACTACTCCGGGACTTCTTTTaGTGGAGGTTCTTCTACAGC | + |
|
Preference number: 5 (lower is better) Translates to: DISQMASYHYAHVAVTLLLRDFF*WRFFYS Trigger: GCTGTAGAAGAACCTCCACAAAAAGAAGTCCCGGAG...TAGTAGTGTTACAGCAACATGTGCATAGTGGTAGGATGCCATCTGACTAATGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | CTGGTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTTCTTCTTCTTCTTaGAGGCATCGTATTCACCCT | + |
|
Preference number: 5 (lower is better) Translates to: LVQVRTKPFETLVRWHPTTSSSS*RHRIHP Trigger: AGGGTGAATACGATGCCTCAAAGAAGAAGAAGAAGT...GGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTTCAGACCCACCTTCTTaGGCATCTTTTTCAGAAGCA | + |
|
Preference number: 5 (lower is better) Translates to: VQVRTKPFETLVRWHPTTSDPPS*ASFSEA Trigger: TGCTTCTGAAAAAGATGCCAAAGAAGGTGGGTCTGA...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | GTAACACTACTATTGACCCTGAAGCATGGGCAAATGGAGATGCAGGGCTCTCCCTGTCTTCAGACTCTTTaGAAAAGCCATTCTTCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: VTLLLTLKHGQMEMQGSPCLQTL*KSHSSH Trigger: ATGAGAAGAATGGCTTTTCAAAAGAGTCTGAAGACA...GGGAGAGCCCTGCATCTCCATTTGCCCATGCTTCAGGGTCAATAGTAGTGTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | TCCAACAAAACTGTATTTGCAAAAACAGACAGCAGTCACGACTTTGCTAGACTCCTCCGGGACTTCTTTTaGTGGAGGTTCTTCTACAGC | + |
|
Preference number: 5 (lower is better) Translates to: SNKTVFAKTDSSHDFARLLRDFF*WRFFYS Trigger: GCTGTAGAAGAACCTCCACAAAAAGAAGTCCCGGAG...GAGTCTAGCAAAGTCGTGACTGCTGTCTGTTTTTGCAAATACAGTTTTGTTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
||
| CDS-3UTR CAA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTTCATTGTCTTCCTCTTaGTCATCAGCATCTTCACAC | + |
|
Preference number: 5 (lower is better) Translates to: VQVRTKPFETLVRWHPTTSLSSS*SSASSH Trigger: GTGTGAAGATGCTGATGACAAAGAGGAAGACAATGA...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTTCAAACAACTTCTCATaGGGACCTTCTTCCTCATCA | + |
|
Preference number: 5 (lower is better) Translates to: VQVRTKPFETLVRWHPTTSNNFS*GPSSSS Trigger: TGATGAGGAAGAAGGTCCCAATGAGAAGTTGTTTGA...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | GAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTATGCACATTCCTTGCCAAGGTCATaGTCTTCAGACTCTTTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: ENKTLRDISQMASYHYAHSLPRS*SSDSFE Trigger: TTCAAAAGAGTCTGAAGACAATGACCTTGGCAAGGA...ATGTGCATAGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | ATTTTTACACTCTTGATTACATACACTGAGGAAGAGGTCTTTGCAGTGAAATTCTGGGTGTCACCTTCCTaGGGGTCTCCTCCATACAAT | + |
|
Preference number: 5 (lower is better) Translates to: IFTLLITYTEEEVFAVKFWVSPS*GSPPYN Trigger: ATTGTATGGAGGAGACCCCAAGGAAGGTGACACCCA...GAATTTCACTGCAAAGACCTCTTCCTCAGTGTATGTAATCAAGAGTGTAAAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114751.9 |
||
| CDS-3UTR CAA 90 bp | GTACAGGTGAGAACAAAACCCTTCGAGACATTAGTCAGATGGCATCCTACCACTTCAAACAACTTCTCATaGGAATTGTCTTCGAATACC | + |
|
Preference number: 5 (lower is better) Translates to: VQVRTKPFETLVRWHPTTSNNFS*ELSSNT Trigger: GGTATTCGAAGACAATTCCAATGAGAAGTTGTTTGA...AGTGGTAGGATGCCATCTGACTAATGTCTCGAAGGGTTTTGTTCTCACCTGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | CAACAAAATGACAGATATCCAGTTTACTTGCATGGTAACTGTGAAGTTTTGAACAGTGTCATCTGGTGGTaGTCCCAAAGAATGGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: QQNDRYPVYLHGNCEVLNSVIWW*SQRMGF Trigger: GAAGCCCATTCTTTGGGACAACCACCAGATGACACT...GTTCAAAACTTCACAGTTACCATGCAAGTAAACTGGATATCTGTCATTTTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | CAACAAAATGACAGATATCCAGTTTACTTGCATGGTAACTGTGAAGTTTTGAACTCTTCCGACTCTTTCTaGAGGCTGTCTTCCCCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: QQNDRYPVYLHGNCEVLNSSDSF*RLSSPS Trigger: TGAAGGGGAAGACAGCCTCAAGAAAGAGTCGGAAGA...GTTCAAAACTTCACAGTTACCATGCAAGTAAACTGGATATCTGTCATTTTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | CAACAAAATGACAGATATCCAGTTTACTTGCATGGTAACTGTGAAGTTTTGAACTCTTCTGGGAACTCCTaGTCAGAGACATCCTGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: QQNDRYPVYLHGNCEVLNSSGNS*SETSWS Trigger: TGACCAGGATGTCTCTGACAAGGAGTTCCCAGAAGA...GTTCAAAACTTCACAGTTACCATGCAAGTAAACTGGATATCTGTCATTTTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS-3UTR CAA 90 bp | CAACAAAATGACAGATATCCAGTTTACTTGCATGGTAACTGTGAAGTTTTGAACTTCTTGCATTCGCAATaGCTCATCAAACTCATCGTT | + |
|
Preference number: 5 (lower is better) Translates to: QQNDRYPVYLHGNCEVLNFLHSQ*LIKLIV Trigger: AACGATGAGTTTGATGAGCAATTGCGAATGCAAGAA...GTTCAAAACTTCACAGTTACCATGCAAGTAAACTGGATATCTGTCATTTTGTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CAA 72 bp | TCCATCCGCCGGAGGCCTCTGCTGGCCTCAGGAGCATaGAGGAATGCCTCCCAGCCTCTCAGCCGCTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: SIRRRPLLASGA*RNASQPLSRSS Trigger: AGAGGAGCGGCTGAGAGGCTGGGAGGCATTCCTCAATGCTCCTGAGGCCAGCAGAGGCCTCCGGCGGATGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CAA 90 bp | GCGATGGAATCCATCCGCCGGAGGCCTCTGCTGGCCTCAGGAGCATaGAGGAATGCCTCCCAGCCTCTCAGCCGCTCCTCTCTTTCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: AMESIRRRPLLASGA*RNASQPLSRSSLSL Trigger: AAGAGAAAGAGAGGAGCGGCTGAGAGGCTGGGAGGCATTCCTCAATGCTCCTGAGGCCAGCAGAGGCCTCCGGCGGATGGATTCCATCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CCA 72 bp | TCATTCTGGAAGGCCCTGGCCTTTCTGAACCAGCGATaGAATCCATCCGCCGGAGGCCTCTGCTGGCCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: SFWKALAFLNQR*NPSAGGLCWPQ Trigger: CTGAGGCCAGCAGAGGCCTCCGGCGGATGGATTCCATCGCTGGTTCAGAAAGGCCAGGGCCTTCCAGAATGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CAA 90 bp | TTTCTTCCTAGCTTCCCTTTCAGGGCCATTCTCTTGAGCCTCGGTTaGAGGATTACCCTCCTCAGGCTCAAGCGCCCTCTCAGGGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: FLPSFPFRAILLSLG*RITLLRLKRPLRAA Trigger: GGCTGCCCTGAGAGGGCGCTTGAGCCTGAGGAGGGTAATCCTCAAACCGAGGCTCAAGAGAATGGCCCTGAAAGGGAAGCTAGGAAGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS TCA 72 bp | TGCCTCCCAGCCTCTCAGCCGCTCCTCTCTTTCTCTTaGGGTCTCCTCTACCTGATAATCTGTAGTCCCATC | + |
|
Preference number: 6 (lower is better) Translates to: CLPASQPLLSFS*GLLYLIICSPI Trigger: GATGGGACTACAGATTATCAGGTAGAGGAGACCTCAAGAGAAAGAGAGGAGCGGCTGAGAGGCTGGGAGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CCA 72 bp | TTTGAGAATGACAACTCGCTCATGGCGCAGCCGGTTTaGTCCAGCTCGTCTCTCAGGTCTCCAATCCAACTG | + |
|
Preference number: 6 (lower is better) Translates to: FENDNSLMAQPV*SSSSLRSPIQL Trigger: CAGTTGGATTGGAGACCTGAGAGACGAGCTGGACCAAACCGGCTGCGCCATGAGCGAGTTGTCATTCTCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CAA 72 bp | CTCCTCTACCTGATAATCTGTAGTCCCATCCCAGGCTaGAGCAGTGATCTGTCGGCCACCAAACCACCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LLYLIICSPIPG*SSDLSATKPPS Trigger: GGAAGGTGGTTTGGTGGCCGACAGATCACTGCTCAAGCCTGGGATGGGACTACAGATTATCAGGTAGAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CCA 72 bp | TGTCCCAAAGAATGGGCTTCTCCAGAGGGCTCATTCTaGGTGTCACCTTCCTTGGGGTCTCCTCCATACAAT | + |
|
Preference number: 6 (lower is better) Translates to: CPKEWASPEGSF*VSPSLGSPPYN Trigger: ATTGTATGGAGGAGACCCCAAGGAAGGTGACACCCAGAATGAGCCCTCTGGAGAAGCCCATTCTTTGGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CCA 72 bp | TGTGGAGGTTCTTCTACAGCCTTAGTGTTGGCGTCCTaGACGTTCGCAGTAGAGCTGGATGCACCATCACTA | + |
|
Preference number: 6 (lower is better) Translates to: CGGSSTALVLAS*TFAVELDAPSL Trigger: TAGTGATGGTGCATCCAGCTCTACTGCGAACGTCCAGGACGCCAACACTAAGGCTGTAGAAGAACCTCCACA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CCA 72 bp | CTCTGGCTCTCTGAAGGACACAGAGGCCACACCATCTaGGTGTCTATCAAACAGAAGGAGCTTCCGAATCTG | + |
|
Preference number: 6 (lower is better) Translates to: LWLSEGHRGHTI*VSIKQKELPNL Trigger: CAGATTCGGAAGCTCCTTCTGTTTGATAGACACCCAGATGGTGTGGCCTCTGTGTCCTTCAGAGAGCCAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CAA 72 bp | GCTTTTCTTCCTAGCTTCCCTTTCAGGGCCATTCTCTaGAGCCTCGGTTTGAGGATTACCCTCCTCAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: AFLPSFPFRAIL*SLGLRITLLRL Trigger: GAGCCTGAGGAGGGTAATCCTCAAACCGAGGCTCAAGAGAATGGCCCTGAAAGGGAAGCTAGGAAGAAAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CAA 90 bp | AGCCTTCTTATCAAGGTCCCACTCGTAAGGAGTGTCATCTGGTGGTaGTCCCAAAGAATGGGCTTCTCCAGAGGGCTCATTCTGGGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SLLIKVPLVRSVIWW*SQRMGFSRGLILGV Trigger: GACACCCAGAATGAGCCCTCTGGAGAAGCCCATTCTTTGGGACAACCACCAGATGACACTCCTTACGAGTGGGACCTTGATAAGAAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CAA 90 bp | GTCTCCGGGACTTCTTTTTGTGGAGGTTCTTCTACAGCCTTAGTGTaGGCGTCCTGGACGTTCGCAGTAGAGCTGGATGCACCATCACTA | + |
|
Preference number: 6 (lower is better) Translates to: VSGTSFCGGSSTALV*ASWTFAVELDAPSL Trigger: TAGTGATGGTGCATCCAGCTCTACTGCGAACGTCCAGGACGCCAACACTAAGGCTGTAGAAGAACCTCCACAAAAAGAAGTCCCGGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CAA 90 bp | ATCCATTTTGCTTTTCTTCCTAGCTTCCCTTTCAGGGCCATTCTCTaGAGCCTCGGTTTGAGGATTACCCTCCTCAGGCTCAAGCGCCCT | + |
|
Preference number: 6 (lower is better) Translates to: IHFAFLPSFPFRAIL*SLGLRITLLRLKRP Trigger: AGGGCGCTTGAGCCTGAGGAGGGTAATCCTCAAACCGAGGCTCAAGAGAATGGCCCTGAAAGGGAAGCTAGGAAGAAAAGCAAAATGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS CCA 72 bp | CTTCTTATCAAGGTCCCACTCGTAAGGAGTGTCATCTaGTGGTTGTCCCAAAGAATGGGCTTCTCCAGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: LLIKVPLVRSVI*WLSQRMGFSRG Trigger: CCCTCTGGAGAAGCCCATTCTTTGGGACAACCACCAGATGACACTCCTTACGAGTGGGACCTTGATAAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CAA 72 bp | GCTTCTCCAGAGGGCTCATTCTGGGTGTCACCTTCCTaGGGGTCTCCTCCATACAATTCTTGCATTCGCAAT | + |
|
Preference number: 6 (lower is better) Translates to: ASPEGSFWVSPS*GSPPYNSCIRN Trigger: ATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAAGGAAGGTGACACCCAGAATGAGCCCTCTGGAGAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CAA 72 bp | ATCAAGGTCCCACTCGTAAGGAGTGTCATCTGGTGGTaGTCCCAAAGAATGGGCTTCTCCAGAGGGCTCATT | + |
|
Preference number: 6 (lower is better) Translates to: IKVPLVRSVIWW*SQRMGFSRGLI Trigger: AATGAGCCCTCTGGAGAAGCCCATTCTTTGGGACAACCACCAGATGACACTCCTTACGAGTGGGACCTTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CAA 90 bp | AAAGAATGGGCTTCTCCAGAGGGCTCATTCTGGGTGTCACCTTCCTaGGGGTCTCCTCCATACAATTCTTGCATTCGCAATTGCTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: KEWASPEGSFWVSPS*GSPPYNSCIRNCSS Trigger: TGATGAGCAATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAAGGAAGGTGACACCCAGAATGAGCCCTCTGGAGAAGCCCATTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS TCA 72 bp | ATTCCTCCTCTGAATCATCATCTTCCGACTCTTTCTTaGGGCTGTCTTCCCCTTCAGACTCCTTGCCAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: IPPLNHHLPTLS*GCLPLQTPCQG Trigger: ACCTTGGCAAGGAGTCTGAAGGGGAAGACAGCCTCAAGAAAGAGTCGGAAGATGATGATTCAGAGGAGGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
||
| CDS GCA 72 bp | GTGTCACCTTCCTTGGGGTCTCCTCCATACAATTCTTaGATTCGCAATTGCTCATCAAACTCATCGTTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: VSPSLGSPPYNS*IRNCSSNSSFP Trigger: CGGGAACGATGAGTTTGATGAGCAATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAAGGAAGGTGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
||
| CDS CAA 72 bp | GGTGTCACCTTCCTTGGGGTCTCCTCCATACAATTCTaGCATTCGCAATTGCTCATCAAACTCATCGTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: GVTFLGVSSIQF*HSQLLIKLIVP Trigger: GGGAACGATGAGTTTGATGAGCAATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAAGGAAGGTGACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
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| CDS CAA 90 bp | GTCACCTTCCTTGGGGTCTCCTCCATACAATTCTTGCATTCGCAATaGCTCATCAAACTCATCGTTCCCGCTCAAGTTGTTGCCACTCAT | + |
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Preference number: 6 (lower is better) Translates to: VTFLGVSSIQFLHSQ*LIKLIVPAQVVATH Trigger: ATGAGTGGCAACAACTTGAGCGGGAACGATGAGTTTGATGAGCAATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAAGGAAGGTGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
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| CDS TCA 72 bp | TTCCTGAGCCTTCATATTAGACATACTTGGGTGCTCTaGAAAATGCCTCATTCTGGAAGGCCCTGGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: FLSLHIRHTWVL*KMPHSGRPWPF Trigger: GAAAGGCCAGGGCCTTCCAGAATGAGGCATTTTTCAGAGCACCCAAGTATGTCTAATATGAAGGCTCAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS CAA 90 bp | TCTGGGTGTCTATCAAACAGAAGGAGCTTCCGAATCTGCCCAAACTaGGAACATTCTACTCGCAGATCTTCTCTGATCTCATTCAGTACC | + |
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Preference number: 6 (lower is better) Translates to: SGCLSNRRSFRICPN*EHSTRRSSLISFST Trigger: GGTACTGAATGAGATCAGAGAAGATCTGCGAGTAGAATGTTCCAAGTTTGGGCAGATTCGGAAGCTCCTTCTGTTTGATAGACACCCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS GCA 72 bp | TTGGGGTCTCCTCCATACAATTCTTGCATTCGCAATTaGTCATCAAACTCATCGTTCCCGCTCAAGTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: LGSPPYNSCIRN*SSNSSFPLKLL Trigger: CAACAACTTGAGCGGGAACGATGAGTTTGATGAGCAATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
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| CDS CAA 72 bp | CTTGGGGTCTCCTCCATACAATTCTTGCATTCGCAATaGCTCATCAAACTCATCGTTCCCGCTCAAGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: LGVSSIQFLHSQ*LIKLIVPAQVV Trigger: AACAACTTGAGCGGGAACGATGAGTTTGATGAGCAATTGCGAATGCAAGAATTGTATGGAGGAGACCCCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088652.6 ENSMUST00000114751.9 |
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| CDS TCA 72 bp | ACTTCTTCTTCTTCTTTGAGGCATCGTATTCACCCTTaGGCTGGAACTTTGCCACCTCCACATGCAATTTGT | + |
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Preference number: 6 (lower is better) Translates to: TSSSSLRHRIHP*AGTLPPPHAIC Trigger: ACAAATTGCATGTGGAGGTGGCAAAGTTCCAGCTCAAGGGTGAATACGATGCCTCAAAGAAGAAGAAGAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS TCA 72 bp | GCCCAAACTTGGAACATTCTACTCGCAGATCTTCTCTaGTCTCATTCAGTACCAATGGGTCATCCTCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: AQTWNILLADLL*SHSVPMGHPQS Trigger: ACTTTGAGGATGACCCATTGGTACTGAATGAGATCAGAGAAGATCTGCGAGTAGAATGTTCCAAGTTTGGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS CAA 72 bp | CTATCAAACAGAAGGAGCTTCCGAATCTGCCCAAACTaGGAACATTCTACTCGCAGATCTTCTCTGATCTCA | + |
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Preference number: 6 (lower is better) Translates to: LSNRRSFRICPN*EHSTRRSSLIS Trigger: TGAGATCAGAGAAGATCTGCGAGTAGAATGTTCCAAGTTTGGGCAGATTCGGAAGCTCCTTCTGTTTGATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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| CDS TCA 72 bp | TTCAGTACCAATGGGTCATCCTCAAAGTCCATGGGGTaGAACATATTTTTGAGAATGACAACTCGCTCATGG | + |
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Preference number: 6 (lower is better) Translates to: FSTNGSSSKSMG*NIFLRMTTRSW Trigger: CCATGAGCGAGTTGTCATTCTCAAAAATATGTTTCACCCCATGGACTTTGAGGATGACCCATTGGTACTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088652.6 |
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