Pregenerated sensors for HSPD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025980

Ensembl transcript IDs: ENSMUST00000027123.15

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	GAAAGGCTGCTTCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTGATGCTCAGGACACTGGTATATaGCTCTTGCACCCAGCATCA	+
Preference number: 2 (lower is better) Translates to: ERLLLNSHVVTQRYSPDAQDTGI*LLHPAS Trigger: TGATGCTGGGTGCAAGAGCCATATACCAGTGTCCTG...AGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027123.15
3UTR-3UTR CCA 90 bp	GAAAGGCTGCTTCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTGATGCTTTGAAAGCAGGACACTaGTATATGGCTCTTGCACCC	+
Preference number: 2 (lower is better) Translates to: ERLLLNSHVVTQRYSPDALKAGH*YMALAP Trigger: GGGTGCAAGAGCCATATACCAGTGTCCTGCTTTCAA...AGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027123.15
3UTR-3UTR CAA 90 bp	GAAAGGCTGCTTCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTGATGCTACTGGTATATGGCTCTaGCACCCAGCATCAGGAATG	+
Preference number: 3 (lower is better) Translates to: ERLLLNSHVVTQRYSPDATGIWL*HPASGM Trigger: CATTCCTGATGCTGGGTGCAAGAGCCATATACCAGT...AGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027123.15
3UTR TCA 72 bp	TCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTaGTGCTCACAGAACAGTAGAGATGCCTCAGTGATT	+
Preference number: 3 (lower is better) Translates to: SELSCGDTALQS*CSQNSRDASVI Trigger: AATCACTGAGGCATCTCTACTGTTCTGTGAGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027123.15
CDS-3UTR GCA 90 bp	GAAAGGCTGCTTCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTGATGCTAATCCAAGGCTGGGATaGACCGAAGCAGAGCGCAGC	+
Preference number: 4 (lower is better) Translates to: ERLLLNSHVVTQRYSPDANPRLG*TEAERS Trigger: GCTGCGCTCTGCTTCGGTGCATCCCAGCCTTGGATT...AGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027123.15
CDS-3UTR CCA 90 bp	GAAAGGCTGCTTCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTGATGCTTCTCCGGATTTCCACTaGATTAGCCCCTTTGCTGAT	+
Preference number: 4 (lower is better) Translates to: ERLLLNSHVVTQRYSPDASPDFH*ISPFAD Trigger: ATCAGCAAAGGGGCTAATCCAGTGGAAATCCGGAGA...AGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027123.15
CDS-3UTR CCA 90 bp	GAAAGGCTGCTTCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTGATGCTTCTATACCTATTTTCTaGTCTTCATTAGCAGGCTTT	+
Preference number: 4 (lower is better) Translates to: ERLLLNSHVVTQRYSPDASIPIF*SSLAGF Trigger: AAAGCCTGCTAATGAAGACCAGAAAATAGGTATAGA...AGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027123.15
CDS-3UTR CAA 90 bp	GAAAGGCTGCTTCTGAACTCTCATGTGGTGACACAGCGCTACAGTCCTGATGCTTTCTCAAAGCCCTCCTaGGCAATAGATCGTGCCAGA	+
Preference number: 5 (lower is better) Translates to: ERLLLNSHVVTQRYSPDAFSKPS*AIDRAR Trigger: TCTGGCACGATCTATTGCCAAGGAGGGCTTTGAGAA...AGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027123.15

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