Pregenerated sensors for HSPB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036854Ensembl transcript IDs: ENSMUST00000044048.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGGTCTCCGAAGGACATCTAGGTGTGGTTGGGAAAGGCTGTCTTaGCGGCGATTGGGACATCTGGCTGGGCAGTGGAGTCAGATCGGC | + |
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Preference number: 1 (lower is better) Translates to: KGLRRTSRCGWERLS*RRLGHLAGQWSQIG Trigger: GCCGATCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACAGCCTTTCCCAACCACACCTAGATGTCCTTCGGAGACCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CCA 90 bp | GTGTGGTTGGGAAAGGCTGTCTTGACGGCGATTGGGACATCTGGCTaGGCAGTGGAGTCAGATCGGCTTTTAAAAGAGAGCCTAAAGAGG | + |
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Preference number: 1 (lower is better) Translates to: VWLGKAVLTAIGTSG*AVESDRLLKESLKR Trigger: CCTCTTTAGGCTCTCTTTTAAAAGCCGATCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACAGCCTTTCCCAACCACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CCA 90 bp | CTAGGTGTGGTTGGGAAAGGCTGTCTTGACGGCGATTGGGACATCTaGCTGGGCAGTGGAGTCAGATCGGCTTTTAAAAGAGAGCCTAAA | + |
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Preference number: 1 (lower is better) Translates to: LGVVGKGCLDGDWDI*LGSGVRSAFKREPK Trigger: TTTAGGCTCTCTTTTAAAAGCCGATCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACAGCCTTTCCCAACCACACCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CCA 90 bp | GAAGGACATCTAGGTGTGGTTGGGAAAGGCTGTCTTGACGGCGATTaGGACATCTGGCTGGGCAGTGGAGTCAGATCGGCTTTTAAAAGA | + |
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Preference number: 1 (lower is better) Translates to: EGHLGVVGKGCLDGD*DIWLGSGVRSAFKR Trigger: TCTTTTAAAAGCCGATCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACAGCCTTTCCCAACCACACCTAGATGTCCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR TCA 90 bp | TCTGATGTGGAAAGCCCATGCAGTTTCTCCATGTGGAGAATTAGGTaGCTACACTGTACTCTGGTGTCACCTTGGGGTATTCTACACAGG | + |
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Preference number: 1 (lower is better) Translates to: SDVESPCSFSMWRIR*LHCTLVSPWGILHR Trigger: CCTGTGTAGAATACCCCAAGGTGACACCAGAGTACAGTGTAGTCACCTAATTCTCCACATGGAGAAACTGCATGGGCTTTCCACATCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR-3UTR CCA 90 bp | CTGAGGGGTGACAGTAGCGTCCCTAGAGAGGTGTCCTGGGTCGGGCCGGAAAGCGGCGATTGGGACATCTaGCTGGGCAGTGGAGTCAGA | + |
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Preference number: 2 (lower is better) Translates to: LRGDSSVPREVSWVGPESGDWDI*LGSGVR Trigger: TCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCC...GCTTTCCGGCCCGACCCAGGACACCTCTCTAGGGACGCTACTGTCACCCCTCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CAA 90 bp | ATCTGGCTGCAGATGGGCAGCCAGGACAGAGGAACTCAAGGGTTCTaGTTCATTGGCCTAGCACATCTGGAGAAGTTGAAGTGTCCATAC | + |
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Preference number: 2 (lower is better) Translates to: IWLQMGSQDRGTQGF*FIGLAHLEKLKCPY Trigger: GTATGGACACTTCAACTTCTCCAGATGTGCTAGGCCAATGAACAAGAACCCTTGAGTTCCTCTGTCCTGGCTGCCCATCTGCAGCCAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR-3UTR CCA 90 bp | GTTTCTCCATGTGGAGAATTAGGTGACTACACTGTACTCTGGTGTCACCTTGGGTGTCTTGACGGCGATTaGGACATCTGGCTGGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: VSPCGELGDYTVLWCHLGCLDGD*DIWLGS Trigger: ACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACA...CCCAAGGTGACACCAGAGTACAGTGTAGTCACCTAATTCTCCACATGGAGAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR-3UTR GCA 90 bp | TTCAAGAATTTAGGTGCCTGGAGTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGAGATGTGGAAAGCCCATaGAGTTTCTCCATGTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: FKNLGAWSFKSESGLGRGDVESP*SFSMWR Trigger: TCTCCACATGGAGAAACTGCATGGGCTTTCCACATC...TCCTCTGCCCAGCCCACTTTCAGACTTAAAACTCCAGGCACCTAAATTCTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CCA 72 bp | CTAGGTGTGGTTGGGAAAGGCTGTCTTGACGGCGATTaGGACATCTGGCTGGGCAGTGGAGTCAGATCGGCT | + |
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Preference number: 3 (lower is better) Translates to: LGVVGKGCLDGD*DIWLGSGVRSA Trigger: AGCCGATCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACAGCCTTTCCCAACCACACCTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CCA 72 bp | GGAAAGGCTGTCTTGACGGCGATTGGGACATCTGGCTaGGCAGTGGAGTCAGATCGGCTTTTAAAAGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: GKAVLTAIGTSG*AVESDRLLKES Trigger: GCTCTCTTTTAAAAGCCGATCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACAGCCTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CCA 72 bp | GTTGGGAAAGGCTGTCTTGACGGCGATTGGGACATCTaGCTGGGCAGTGGAGTCAGATCGGCTTTTAAAAGA | + |
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Preference number: 3 (lower is better) Translates to: VGKGCLDGDWDI*LGSGVRSAFKR Trigger: TCTTTTAAAAGCCGATCTGACTCCACTGCCCAGCCAGATGTCCCAATCGCCGTCAAGACAGCCTTTCCCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR CCA 72 bp | GGTAGGACTGGTGGACTAGGCTTGGATGTTCTGATGTaGAAAGCCCATGCAGTTTCTCCATGTGGAGAATTA | + |
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Preference number: 3 (lower is better) Translates to: GRTGGLGLDVLM*KAHAVSPCGEL Trigger: TAATTCTCCACATGGAGAAACTGCATGGGCTTTCCACATCAGAACATCCAAGCCTAGTCCACCAGTCCTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR TCA 72 bp | GAAAGCCCATGCAGTTTCTCCATGTGGAGAATTAGGTaGCTACACTGTACTCTGGTGTCACCTTGGGGTATT | + |
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Preference number: 3 (lower is better) Translates to: ESPCSFSMWRIR*LHCTLVSPWGI Trigger: AATACCCCAAGGTGACACCAGAGTACAGTGTAGTCACCTAATTCTCCACATGGAGAAACTGCATGGGCTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| 3UTR-3UTR CAA 90 bp | TTCCCAAGAATTGGAAGTCAGAATAGTATTCAAGAATTTAGGTGCCTGGAGTTTTTGGGAAAGGCTGTCTaGACGGCGATTGGGACATCT | + |
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Preference number: 3 (lower is better) Translates to: FPRIGSQNSIQEFRCLEFLGKAV*TAIGTS Trigger: AGATGTCCCAATCGCCGTCAAGACAGCCTTTCCCAA...AAACTCCAGGCACCTAAATTCTTGAATACTATTCTGACTTCCAATTCTTGGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR TCA 90 bp | GCGTCCCTAGAGAGGTGTCCTGGGTCGGGCCGGAAAGCTGGGAGAGGGCTTAGGCTTGGCAGCAGGTGGTaGCGGAAGTTGGGCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: ASLERCPGSGRKAGRGLRLGSRW*RKLGLG Trigger: GCCCAGGCCCAACTTCCGTCACCACCTGCTGCCAAG...CCTAAGCCCTCTCCCAGCTTTCCGGCCCGACCCAGGACACCTCTCTAGGGACGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR TCA 90 bp | GGGGTGACAGTAGCGTCCCTAGAGAGGTGTCCTGGGTCGGGCCGGAAAGCTGGGCGCAGCAGGGCACAGTaGAGCCAGCTCTGCCTCAAG | + |
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Preference number: 4 (lower is better) Translates to: GVTVASLERCPGSGRKAGRSRAQ*SQLCLK Trigger: CTTGAGGCAGAGCTGGCTTCACTGTGCCCTGCTGCG...CCCAGCTTTCCGGCCCGACCCAGGACACCTCTCTAGGGACGCTACTGTCACCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR CCA 90 bp | GCGTCCCTAGAGAGGTGTCCTGGGTCGGGCCGGAAAGCTGGGAGAGGGCTTAGGCCTTCGCCGAAACGCTaGTCAAAGAGGCGTCCCGGA | + |
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Preference number: 4 (lower is better) Translates to: ASLERCPGSGRKAGRGLRPSPKR*SKRRPG Trigger: TCCGGGACGCCTCTTTGACCAGCGTTTCGGCGAAGG...CCTAAGCCCTCTCCCAGCTTTCCGGCCCGACCCAGGACACCTCTCTAGGGACGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR TCA 90 bp | GCGTCCCTAGAGAGGTGTCCTGGGTCGGGCCGGAAAGCTGGGAGAGGGCTTAGGGGTCGTCAACCACCTTaGCAGAGATTTCCTCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: ASLERCPGSGRKAGRGLRGRQPP*QRFPLA Trigger: TGCCAGAGGAAATCTCTGTCAAGGTGGTTGACGACC...CCTAAGCCCTCTCCCAGCTTTCCGGCCCGACCCAGGACACCTCTCTAGGGACGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR CCA 90 bp | TTCAAGAATTTAGGTGCCTGGAGTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGAGGCCTGGGCCGACGCTaGTGTGGCCTGGATGGACAG | + |
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Preference number: 4 (lower is better) Translates to: FKNLGAWSFKSESGLGRGGLGRR*CGLDGQ Trigger: CTGTCCATCCAGGCCACACCAGCGTCGGCCCAGGCC...TCCTCTGCCCAGCCCACTTTCAGACTTAAAACTCCAGGCACCTAAATTCTTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR GCA 90 bp | AGTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGAGCATTATGTTACAAGAACAGGTCCGGGCGCTCCTCGTaGCGAGCATGGACCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: SFKSESGLGRGALCYKNRSGRSS*RAWTST Trigger: TGTGGAGGTCCATGCTCGGCACGAGGAGCGCCCGGA...CCTGTTCTTGTAACATAATGCTCCTCTGCCCAGCCCACTTTCAGACTTAAAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR TCA 90 bp | TTCAAGAATTTAGGTGCCTGGAGTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGACTCAGGAGACAGTGCTaGGGTCACAGCAGCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: FKNLGAWSFKSESGLGRGLRRQC*GHSSRV Trigger: GACCCTGCTGCTGTGACCTCAGCACTGTCTCCTGAG...TCCTCTGCCCAGCCCACTTTCAGACTTAAAACTCCAGGCACCTAAATTCTTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR GCA 90 bp | TGGAGTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGAGCATTATGTTACAAGAACCGCAGCCAAGAAGGCTaGACAGGCACGGGGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: WSFKSESGLGRGALCYKNRSQEG*TGTGIS Trigger: GGAGATCCCCGTGCCTGTGCAGCCTTCTTGGCTGCG...GTTCTTGTAACATAATGCTCCTCTGCCCAGCCCACTTTCAGACTTAAAACTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR CCA 90 bp | AGTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGAGCATTATGTTACAAGAACAGGGACGCTGGTGTGGCCTaGATGGACAGGACACCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SFKSESGLGRGALCYKNRDAGVA*MDRTPS Trigger: TGAGGGTGTCCTGTCCATCCAGGCCACACCAGCGTC...CCTGTTCTTGTAACATAATGCTCCTCTGCCCAGCCCACTTTCAGACTTAAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR CCA 90 bp | TTCCCAAGAATTGGAAGTCAGAATAGTATTCAAGAATTTAGGTGCCTGGAGTTTGGGCCGACGCTGGTGTaGCCTGGATGGACAGGACAC | + |
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Preference number: 4 (lower is better) Translates to: FPRIGSQNSIQEFRCLEFGPTLV*PGWTGH Trigger: GTGTCCTGTCCATCCAGGCCACACCAGCGTCGGCCC...AAACTCCAGGCACCTAAATTCTTGAATACTATTCTGACTTCCAATTCTTGGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR GCA 90 bp | TGGAGTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGAGCATTATGTTACAAGAACTCCTCTGGCAAGAAGTaGTTCACATCCAGCAGCACG | + |
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Preference number: 4 (lower is better) Translates to: WSFKSESGLGRGALCYKNSSGKK*FTSSST Trigger: CGTGCTGCTGGATGTGAAGCACTTCTTGCCAGAGGA...GTTCTTGTAACATAATGCTCCTCTGCCCAGCCCACTTTCAGACTTAAAACTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR CCA 90 bp | GTTTTAAGTCTGAAAGTGGGCTGGGCAGAGGAGCATTATGTTACAAGAACAGGAGCATGGACCTCCACATaGTCGTCAACCACCTTGACA | + |
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Preference number: 4 (lower is better) Translates to: VLSLKVGWAEEHYVTRTGAWTST*SSTTLT Trigger: TGTCAAGGTGGTTGACGACCATGTGGAGGTCCATGC...TCCTGTTCTTGTAACATAATGCTCCTCTGCCCAGCCCACTTTCAGACTTAAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS TCA 90 bp | ACTGGGGGCGCGCAGATAGTAGGGGGCGATCGCAGCAGGGCACAGTaGAGCCAGCTCTGCCTCAAGCAGCCCTTCGCCGAAACGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: TGGAQIVGGDRSRAQ*SQLCLKQPFAETLV Trigger: GACCAGCGTTTCGGCGAAGGGCTGCTTGAGGCAGAGCTGGCTTCACTGTGCCCTGCTGCGATCGCCCCCTACTATCTGCGCGCCCCCAGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS TCA 90 bp | CGCTGGTGTGGCCTGGATGGACAGGACACCCTCAGGAGACAGTGCTaGGGTCACAGCAGCAGGGTCCACACCAGGAGGCAGGCGGTATCG | + |
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Preference number: 5 (lower is better) Translates to: RWCGLDGQDTLRRQC*GHSSRVHTRRQAVS Trigger: CGATACCGCCTGCCTCCTGGTGTGGACCCTGCTGCTGTGACCTCAGCACTGTCTCCTGAGGGTGTCCTGTCCATCCAGGCCACACCAGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 90 bp | AATACCCAGAGTCCGTGGACACCTGGGCTGTGGGTAACGCCACACTaGGGGCGCGCAGATAGTAGGGGGCGATCGCAGCAGGGCACAGTG | + |
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Preference number: 5 (lower is better) Translates to: NTQSPWTPGLWVTPH*GRADSRGRSQQGTV Trigger: CACTGTGCCCTGCTGCGATCGCCCCCTACTATCTGCGCGCCCCCAGTGTGGCGTTACCCACAGCCCAGGTGTCCACGGACTCTGGGTATT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 90 bp | GCAGGTGGTGACGGAAGTTGGGCCTGGGCCGACGCTGGTGTGGCCTaGATGGACAGGACACCCTCAGGAGACAGTGCTGAGGTCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: AGGDGSWAWADAGVA*MDRTPSGDSAEVTA Trigger: TGCTGTGACCTCAGCACTGTCTCCTGAGGGTGTCCTGTCCATCCAGGCCACACCAGCGTCGGCCCAGGCCCAACTTCCGTCACCACCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS-3UTR CAA 90 bp | CTGAGGGGTGACAGTAGCGTCCCTAGAGAGGTGTCCTGGGTCGGGCCGGAAAGCTGGTCGTCAACCACCTaGACAGAGATTTCCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: LRGDSSVPREVSWVGPESWSSTT*TEISSG Trigger: GCCAGAGGAAATCTCTGTCAAGGTGGTTGACGACCA...GCTTTCCGGCCCGACCCAGGACACCTCTCTAGGGACGCTACTGTCACCCCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 90 bp | CACAGTGAAGCCAGCTCTGCCTCAAGCAGCCCTTCGCCGAAACGCTaGTCAAAGAGGCGTCCCGGAGCAGAGAAACCTGGTAAAGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: HSEASSASSSPSPKR*SKRRPGAEKPGKGA Trigger: AGCTCCTTTACCAGGTTTCTCTGCTCCGGGACGCCTCTTTGACCAGCGTTTCGGCGAAGGGCTGCTTGAGGCAGAGCTGGCTTCACTGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 90 bp | AGAAGTGCTTCACATCCAGCAGCACGGAAAAATACCCAGAGTCCGTaGACACCTGGGCTGTGGGTAACGCCACACTGGGGGCGCGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: RSASHPAARKNTQSP*TPGLWVTPHWGRAD Trigger: ATCTGCGCGCCCCCAGTGTGGCGTTACCCACAGCCCAGGTGTCCACGGACTCTGGGTATTTTTCCGTGCTGCTGGATGTGAAGCACTTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 90 bp | CCGTGTTCATCCGGGCGCTCCTCGTGCCGAGCATGGACCTCCACATaGTCGTCAACCACCTTGACAGAGATTTCCTCTGGCAAGAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: PCSSGRSSCRAWTST*SSTTLTEISSGKKC Trigger: GCACTTCTTGCCAGAGGAAATCTCTGTCAAGGTGGTTGACGACCATGTGGAGGTCCATGCTCGGCACGAGGAGCGCCCGGATGAACACGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS GCA 90 bp | TGGAACTCTCGAGCAATGAATCCGTGTTCATCCGGGCGCTCCTCGTaGCGAGCATGGACCTCCACATGGTCGTCAACCACCTTGACAGAG | + |
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Preference number: 5 (lower is better) Translates to: WNSRAMNPCSSGRSS*RAWTSTWSSTTLTE Trigger: CTCTGTCAAGGTGGTTGACGACCATGTGGAGGTCCATGCTCGGCACGAGGAGCGCCCGGATGAACACGGATTCATTGCTCGAGAGTTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 90 bp | CGAGCAATGAATCCGTGTTCATCCGGGCGCTCCTCGTGCCGAGCATaGACCTCCACATGGTCGTCAACCACCTTGACAGAGATTTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RAMNPCSSGRSSCRA*TSTWSSTTLTEISS Trigger: AGAGGAAATCTCTGTCAAGGTGGTTGACGACCATGTGGAGGTCCATGCTCGGCACGAGGAGCGCCCGGATGAACACGGATTCATTGCTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 72 bp | AGTCCGTGGACACCTGGGCTGTGGGTAACGCCACACTaGGGGCGCGCAGATAGTAGGGGGCGATCGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SPWTPGLWVTPH*GRADSRGRSQQ Trigger: CTGCTGCGATCGCCCCCTACTATCTGCGCGCCCCCAGTGTGGCGTTACCCACAGCCCAGGTGTCCACGGACT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 72 bp | GACGGAAGTTGGGCCTGGGCCGACGCTGGTGTGGCCTaGATGGACAGGACACCCTCAGGAGACAGTGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: DGSWAWADAGVA*MDRTPSGDSAE Trigger: CTCAGCACTGTCTCCTGAGGGTGTCCTGTCCATCCAGGCCACACCAGCGTCGGCCCAGGCCCAACTTCCGTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 72 bp | GTGGTGACGGAAGTTGGGCCTGGGCCGACGCTGGTGTaGCCTGGATGGACAGGACACCCTCAGGAGACAGTG | + |
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Preference number: 6 (lower is better) Translates to: VVTEVGPGPTLV*PGWTGHPQETV Trigger: CACTGTCTCCTGAGGGTGTCCTGTCCATCCAGGCCACACCAGCGTCGGCCCAGGCCCAACTTCCGTCACCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS TCA 72 bp | GCGCAGATAGTAGGGGGCGATCGCAGCAGGGCACAGTaGAGCCAGCTCTGCCTCAAGCAGCCCTTCGCCGAA | + |
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Preference number: 6 (lower is better) Translates to: AQIVGGDRSRAQ*SQLCLKQPFAE Trigger: TTCGGCGAAGGGCTGCTTGAGGCAGAGCTGGCTTCACTGTGCCCTGCTGCGATCGCCCCCTACTATCTGCGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 72 bp | GCCAGCTCTGCCTCAAGCAGCCCTTCGCCGAAACGCTaGTCAAAGAGGCGTCCCGGAGCAGAGAAACCTGGT | + |
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Preference number: 6 (lower is better) Translates to: ASSASSSPSPKR*SKRRPGAEKPG Trigger: ACCAGGTTTCTCTGCTCCGGGACGCCTCTTTGACCAGCGTTTCGGCGAAGGGCTGCTTGAGGCAGAGCTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS GCA 72 bp | CGAGCAATGAATCCGTGTTCATCCGGGCGCTCCTCGTaGCGAGCATGGACCTCCACATGGTCGTCAACCACC | + |
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Preference number: 6 (lower is better) Translates to: RAMNPCSSGRSS*RAWTSTWSSTT Trigger: GGTGGTTGACGACCATGTGGAGGTCCATGCTCGGCACGAGGAGCGCCCGGATGAACACGGATTCATTGCTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 72 bp | TCCGGGCGCTCCTCGTGCCGAGCATGGACCTCCACATaGTCGTCAACCACCTTGACAGAGATTTCCTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SGRSSCRAWTST*SSTTLTEISSG Trigger: GCCAGAGGAAATCTCTGTCAAGGTGGTTGACGACCATGTGGAGGTCCATGCTCGGCACGAGGAGCGCCCGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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| CDS CCA 72 bp | AATCCGTGTTCATCCGGGCGCTCCTCGTGCCGAGCATaGACCTCCACATGGTCGTCAACCACCTTGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: NPCSSGRSSCRA*TSTWSSTTLTE Trigger: CTCTGTCAAGGTGGTTGACGACCATGTGGAGGTCCATGCTCGGCACGAGGAGCGCCCGGATGAACACGGATT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044048.8 |
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