RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HSPB3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051456

Ensembl transcript IDs: ENSMUST00000054650.5

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp GCATTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAACTTCTCCGTGGAGGCTaGGTCCTCTGCCAGAGCCTG +
Preference number: 4 (lower is better)
Translates to: AFPGCPWLSSSFLGYEEQLLRGG*VLCQSL
Trigger: CAGGCTCTGGCAGAGGACTCAGCCTCCACGGAGAAG...TTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR GCA 90 bp TCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAACCAATCTGGTTCCGTGCTGTaGCTTGATCAGCAGCCAGCC +
Preference number: 4 (lower is better)
Translates to: SRGVPGFHLPSWGMKSNQSGSVL*LDQQPA
Trigger: GGCTGGCTGCTGATCAAGGCACAGCACGGAACCAGA...TTGGTTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR CCA 90 bp AAGCATTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCCAGCCCTCGAAGGTCTaGATGATGATGTCCTCGGGC +
Preference number: 4 (lower is better)
Translates to: KHSRGVPGFHLPSWGMKSQPSKV*MMMSSG
Trigger: GCCCGAGGACATCATCATCCAGACCTTCGAGGGCTG...GCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAATGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR GCA 90 bp TCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAACCAATCTGGAAACGGGATTTaGCTTCTCCGGGTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: SRGVPGFHLPSWGMKSNQSGNGI*LLRVAS
Trigger: AGAAGCCACCCGGAGAAGGCAAATCCCGTTTCCAGA...TTGGTTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR CCA 90 bp GCATTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAACTCCTGATAACGCACTaGGGTCTCTATGAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: AFPGCPWLSSSFLGYEEQLLITH*GLYEVP
Trigger: AGGCACCTCATAGAGACCCCAGTGCGTTATCAGGAG...TTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR TCA 90 bp TTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAACCAAGTGCGTATAGTGTATaGTCCAGTCTGCAGTCTTCT +
Preference number: 4 (lower is better)
Translates to: FPGCPWLSSSFLGYEEQPSAYSV*SSLQSS
Trigger: AGAAGACTGCAGACTGGATCATACACTATACGCACT...TGGTTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR TCA 90 bp TCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAACCAATCCCTAGTGAATCTTTaGCTTCCACCACCAAGATTC +
Preference number: 4 (lower is better)
Translates to: SRGVPGFHLPSWGMKSNQSLVNL*LPPPRF
Trigger: GAATCTTGGTGGTGGAAGTCAAAGATTCACTAGGGA...TTGGTTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR CCA 90 bp GCATTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAATGGCAGACAAATCTTTaGTTTCGACTCCATCTGGCA +
Preference number: 4 (lower is better)
Translates to: AFPGCPWLSSSFLGYEEQWQTNL*FRLHLA
Trigger: TGCCAGATGGAGTCGAAACCAAAGATTTGTCTGCCA...TTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR CCA 90 bp CATCTCAAAAGTTTAAGCATTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGTTTCGACTCCATCTaGCAGTTTGTACTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: HLKSLSIPGVSLAFIFLPGFDSI*QFVLSG
Trigger: ACCAGACAGTACAAACTGCCAGATGGAGTCGAAACC...AGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAATGCTTAAACTTTTGAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 90 bp GCAGGATCTGGAAACGGGATTTGCCTTCTCCGGGTGGCTTCTCCGTaGAGGCTGAGTCCTCTGCCAGAGCCTGTGGCGTGCCTGCGCCTC +
Preference number: 5 (lower is better)
Translates to: AGSGNGICLLRVASP*RLSPLPEPVACLRL
Trigger: GAGGCGCAGGCACGCCACAGGCTCTGGCAGAGGACTCAGCCTCCACGGAGAAGCCACCCGGAGAAGGCAAATCCCGTTTCCAGATCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 90 bp TGGAGGCTGAGTCCTCTGCCAGAGCCTGTGGCGTGCCTGCGCCTCTaGCTTTACTCAGGTCCTCGATGGTTGGCCCGGGCAGTGCGTATA +
Preference number: 5 (lower is better)
Translates to: WRLSPLPEPVACLRL*LYSGPRWLARAVRI
Trigger: TATACGCACTGCCCGGGCCAACCATCGAGGACCTGAGTAAAGCCAGAGGCGCAGGCACGCCACAGGCTCTGGCAGAGGACTCAGCCTCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 90 bp CTGGTTCCGTGCTGTGCCTTGATCAGCAGCCAGCCCTCGAAGGTCTaGATGATGATGTCCTCGGGCAGGAACTGGACCACATCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: LVPCCALISSQPSKV*MMMSSGRNWTTSSR
Trigger: CCTGCTGGATGTGGTCCAGTTCCTGCCCGAGGACATCATCATCCAGACCTTCGAGGGCTGGCTGCTGATCAAGGCACAGCACGGAACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 90 bp ATGATGATGTCCTCGGGCAGGAACTGGACCACATCCAGCAGGATCTaGAAACGGGATTTGCCTTCTCCGGGTGGCTTCTCCGTGGAGGCT +
Preference number: 5 (lower is better)
Translates to: MMMSSGRNWTTSSRI*KRDLPSPGGFSVEA
Trigger: AGCCTCCACGGAGAAGCCACCCGGAGAAGGCAAATCCCGTTTCCAGATCCTGCTGGATGTGGTCCAGTTCCTGCCCGAGGACATCATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 90 bp AGCCAGCCCTCGAAGGTCTGGATGATGATGTCCTCGGGCAGGAACTaGACCACATCCAGCAGGATCTGGAAACGGGATTTGCCTTCTCCG +
Preference number: 5 (lower is better)
Translates to: SQPSKVWMMMSSGRN*TTSSRIWKRDLPSP
Trigger: CGGAGAAGGCAAATCCCGTTTCCAGATCCTGCTGGATGTGGTCCAGTTCCTGCCCGAGGACATCATCATCCAGACCTTCGAGGGCTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS GCA 90 bp ACTCCGCGATATAAACCCGTGTTCGTCCATTCTGGTTCCGTGCTGTaGCTTGATCAGCAGCCAGCCCTCGAAGGTCTGGATGATGATGTC +
Preference number: 5 (lower is better)
Translates to: TPRYKPVFVHSGSVL*LDQQPALEGLDDDV
Trigger: GACATCATCATCCAGACCTTCGAGGGCTGGCTGCTGATCAAGGCACAGCACGGAACCAGAATGGACGAACACGGGTTTATATCGCGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS GCA 90 bp GTGAAACTCCGCGATATAAACCCGTGTTCGTCCATTCTGGTTCCGTaGTGTGCCTTGATCAGCAGCCAGCCCTCGAAGGTCTGGATGATG +
Preference number: 5 (lower is better)
Translates to: VKLRDINPCSSILVP*CALISSQPSKVWMM
Trigger: CATCATCCAGACCTTCGAGGGCTGGCTGCTGATCAAGGCACAGCACGGAACCAGAATGGACGAACACGGGTTTATATCGCGGAGTTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR CAA 90 bp CATCTCAAAAGTTTAAGCATTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGTTCCGTGCTGTGCCTaGATCAGCAGCCAGCCCTCG +
Preference number: 5 (lower is better)
Translates to: HLKSLSIPGVSLAFIFLPVPCCA*ISSQPS
Trigger: CGAGGGCTGGCTGCTGATCAAGGCACAGCACGGAAC...AGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAATGCTTAAACTTTTGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS TCA 90 bp TTACTCAGGTCCTCGATGGTTGGCCCGGGCAGTGCGTATAGTGTATaGTCCAGTCTGCAGTCTTCTAAGCCTCGAGCTTCAAACTCCTCC +
Preference number: 5 (lower is better)
Translates to: LLRSSMVGPGSAYSV*SSLQSSKPRASNSS
Trigger: GGAGGAGTTTGAAGCTCGAGGCTTAGAAGACTGCAGACTGGATCATACACTATACGCACTGCCCGGGCCAACCATCGAGGACCTGAGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS GCA 90 bp CCTCGATGGTTGGCCCGGGCAGTGCGTATAGTGTATGATCCAGTCTaGAGTCTTCTAAGCCTCGAGCTTCAAACTCCTCCTGATAACGCA +
Preference number: 5 (lower is better)
Translates to: PRWLARAVRIVYDPV*SLLSLELQTPPDNA
Trigger: TGCGTTATCAGGAGGAGTTTGAAGCTCGAGGCTTAGAAGACTGCAGACTGGATCATACACTATACGCACTGCCCGGGCCAACCATCGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR CAA 90 bp GGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAACCAAAAGGCTATCTGGAAACGGGATTaGCCTTCTCCGGGTGGCTTC +
Preference number: 5 (lower is better)
Translates to: GVPGFHLPSWGMKSNQKAIWKRD*PSPGGF
Trigger: GAAGCCACCCGGAGAAGGCAAATCCCGTTTCCAGAT...AGCCTTTTGGTTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS-3UTR CAA 90 bp GCATTCCCGGGGTGTCCCTGGCTTTCATCTTCCTTCCTGGGGTATGAAGAGCAAATGGCAGACAAATCTTaGGTTTCGACTCCATCTGGC +
Preference number: 5 (lower is better)
Translates to: AFPGCPWLSSSFLGYEEQMADKS*VSTPSG
Trigger: GCCAGATGGAGTCGAAACCAAAGATTTGTCTGCCAT...TTGCTCTTCATACCCCAGGAAGGAAGATGAAAGCCAGGGACACCCCGGGAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS TCA 90 bp TTGGTCCCTAGTGAATCTTTGACTTCCACCACCAAGATTCCATCATaGCAGAGGATGGCAGACAAATCTTTGGTTTCGACTCCATCTGGC +
Preference number: 5 (lower is better)
Translates to: LVPSESLTSTTKIPS*QRMADKSLVSTPSG
Trigger: GCCAGATGGAGTCGAAACCAAAGATTTGTCTGCCATCCTCTGTCATGATGGAATCTTGGTGGTGGAAGTCAAAGATTCACTAGGGACCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 90 bp ATCATGACAGAGGATGGCAGACAAATCTTTGGTTTCGACTCCATCTaGCAGTTTGTACTGTCTGGTGAAACTCCGCGATATAAACCCGTG +
Preference number: 5 (lower is better)
Translates to: IMTEDGRQIFGFDSI*QFVLSGETPRYKPV
Trigger: CACGGGTTTATATCGCGGAGTTTCACCAGACAGTACAAACTGCCAGATGGAGTCGAAACCAAAGATTTGTCTGCCATCCTCTGTCATGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 72 bp AGTCCTCTGCCAGAGCCTGTGGCGTGCCTGCGCCTCTaGCTTTACTCAGGTCCTCGATGGTTGGCCCGGGCA +
Preference number: 6 (lower is better)
Translates to: SPLPEPVACLRL*LYSGPRWLARA
Trigger: TGCCCGGGCCAACCATCGAGGACCTGAGTAAAGCCAGAGGCGCAGGCACGCCACAGGCTCTGGCAGAGGACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CAA 90 bp TCGGGCAGGAACTGGACCACATCCAGCAGGATCTGGAAACGGGATTaGCCTTCTCCGGGTGGCTTCTCCGTGGAGGCTGAGTCCTCTGCC +
Preference number: 6 (lower is better)
Translates to: SGRNWTTSSRIWKRD*PSPGGFSVEAESSA
Trigger: GGCAGAGGACTCAGCCTCCACGGAGAAGCCACCCGGAGAAGGCAAATCCCGTTTCCAGATCCTGCTGGATGTGGTCCAGTTCCTGCCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 72 bp TCCTCGGGCAGGAACTGGACCACATCCAGCAGGATCTaGAAACGGGATTTGCCTTCTCCGGGTGGCTTCTCC +
Preference number: 6 (lower is better)
Translates to: SSGRNWTTSSRI*KRDLPSPGGFS
Trigger: GGAGAAGCCACCCGGAGAAGGCAAATCCCGTTTCCAGATCCTGCTGGATGTGGTCCAGTTCCTGCCCGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 72 bp TGCTGTGCCTTGATCAGCAGCCAGCCCTCGAAGGTCTaGATGATGATGTCCTCGGGCAGGAACTGGACCACA +
Preference number: 6 (lower is better)
Translates to: CCALISSQPSKV*MMMSSGRNWTT
Trigger: TGTGGTCCAGTTCCTGCCCGAGGACATCATCATCCAGACCTTCGAGGGCTGGCTGCTGATCAAGGCACAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CAA 90 bp CGCGATATAAACCCGTGTTCGTCCATTCTGGTTCCGTGCTGTGCCTaGATCAGCAGCCAGCCCTCGAAGGTCTGGATGATGATGTCCTCG +
Preference number: 6 (lower is better)
Translates to: RDINPCSSILVPCCA*ISSQPSKVWMMMSS
Trigger: CGAGGACATCATCATCCAGACCTTCGAGGGCTGGCTGCTGATCAAGGCACAGCACGGAACCAGAATGGACGAACACGGGTTTATATCGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS TCA 72 bp TCCTCGATGGTTGGCCCGGGCAGTGCGTATAGTGTATaGTCCAGTCTGCAGTCTTCTAAGCCTCGAGCTTCA +
Preference number: 6 (lower is better)
Translates to: SSMVGPGSAYSV*SSLQSSKPRAS
Trigger: TGAAGCTCGAGGCTTAGAAGACTGCAGACTGGATCATACACTATACGCACTGCCCGGGCCAACCATCGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS GCA 72 bp TATAAACCCGTGTTCGTCCATTCTGGTTCCGTGCTGTaGCTTGATCAGCAGCCAGCCCTCGAAGGTCTGGAT +
Preference number: 6 (lower is better)
Translates to: YKPVFVHSGSVL*LDQQPALEGLD
Trigger: ATCCAGACCTTCGAGGGCTGGCTGCTGATCAAGGCACAGCACGGAACCAGAATGGACGAACACGGGTTTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 72 bp TCGAAGGTCTGGATGATGATGTCCTCGGGCAGGAACTaGACCACATCCAGCAGGATCTGGAAACGGGATTTG +
Preference number: 6 (lower is better)
Translates to: SKVWMMMSSGRN*TTSSRIWKRDL
Trigger: CAAATCCCGTTTCCAGATCCTGCTGGATGTGGTCCAGTTCCTGCCCGAGGACATCATCATCCAGACCTTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CAA 90 bp CAGAGGATGGCAGACAAATCTTTGGTTTCGACTCCATCTGGCAGTTaGTACTGTCTGGTGAAACTCCGCGATATAAACCCGTGTTCGTCC +
Preference number: 6 (lower is better)
Translates to: QRMADKSLVSTPSGS*YCLVKLRDINPCSS
Trigger: GGACGAACACGGGTTTATATCGCGGAGTTTCACCAGACAGTACAAACTGCCAGATGGAGTCGAAACCAAAGATTTGTCTGCCATCCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 72 bp GAGGATGGCAGACAAATCTTTGGTTTCGACTCCATCTaGCAGTTTGTACTGTCTGGTGAAACTCCGCGATAT +
Preference number: 6 (lower is better)
Translates to: EDGRQIFGFDSI*QFVLSGETPRY
Trigger: ATATCGCGGAGTTTCACCAGACAGTACAAACTGCCAGATGGAGTCGAAACCAAAGATTTGTCTGCCATCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CAA 72 bp GCAGACAAATCTTTGGTTTCGACTCCATCTGGCAGTTaGTACTGTCTGGTGAAACTCCGCGATATAAACCCG +
Preference number: 6 (lower is better)
Translates to: ADKSLVSTPSGS*YCLVKLRDINP
Trigger: CGGGTTTATATCGCGGAGTTTCACCAGACAGTACAAACTGCCAGATGGAGTCGAAACCAAAGATTTGTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5
CDS CCA 72 bp AGATTCCATCATGACAGAGGATGGCAGACAAATCTTTaGTTTCGACTCCATCTGGCAGTTTGTACTGTCTGG +
Preference number: 6 (lower is better)
Translates to: RFHHDRGWQTNL*FRLHLAVCTVW
Trigger: CCAGACAGTACAAACTGCCAGATGGAGTCGAAACCAAAGATTTGTCTGCCATCCTCTGTCATGATGGAATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054650.5