Pregenerated sensors for HSPB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038086Ensembl transcript IDs: ENSMUST00000042790.5, ENSMUST00000217159.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGATGCTaGTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACGGGAGG | + |
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Preference number: 1 (lower is better) Translates to: TIHCGPCTDAISQGC*SLWGVVDLWNHHGR Trigger: CCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR TCA 90 bp | AGGTTTTGGTTTATTCAGCCCCACCCAGAATTAAATCAAAGGCTTTaGTACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGA | + |
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Preference number: 1 (lower is better) Translates to: RFWFIQPHPELNQRL*YIKGPNHTLWTMHR Trigger: TCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGGGGCTGAATAAACCAAAACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR-3UTR CCA 90 bp | ACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGATGCTGCTCCCTCTaGGGTGTGGTGGATTTATGG | + |
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Preference number: 2 (lower is better) Translates to: TSRDQTIHCGPCTDAISQGCCSL*GVVDLW Trigger: CCATAAATCCACCACACCCCAGAGGGAGCAGCATCC...CTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGCTTTGATACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGAGACAGGGGATTCACTaGGTGCTGGGTCTATCGCTG | + |
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Preference number: 2 (lower is better) Translates to: KALIHQGTKPYTVDHAPMRQGIH*VLGLSL Trigger: CAGCGATAGACCCAGCACCCAGTGAATCCCCTGTCT...CATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR CAA 90 bp | CAGGTTTTGGTTTATTCAGCCCCACCCAGAATTAAATCAAAGGCTTaGATACATCAAGGGACCAAACCATACACTGTGGACCATGCACCG | + |
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Preference number: 2 (lower is better) Translates to: QVLVYSAPPRIKSKA*IHQGTKPYTVDHAP Trigger: CGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGGGGCTGAATAAACCAAAACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR CCA 72 bp | CCATCTCCCAGGGATGCTGCTCCCTCTGGGGTGTGGTaGATTTATGGAATCACCACGGGAGGTAGACAGGGG | + |
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Preference number: 3 (lower is better) Translates to: PSPRDAAPSGVW*IYGITTGGRQG Trigger: CCCCTGTCTACCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR GCA 72 bp | AAGGGACCAAACCATACACTGTGGACCATGCACCGATaGCATCTCCCAGGGATGCTGCTCCCTCTGGGGTGT | + |
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Preference number: 3 (lower is better) Translates to: KGPNHTLWTMHR*HLPGMLLPLGC Trigger: ACACCCCAGAGGGAGCAGCATCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR GCA 72 bp | TGTGGACCATGCACCGATGCCATCTCCCAGGGATGCTaGTCCCTCTGGGGTGTGGTGGATTTATGGAATCAC | + |
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Preference number: 3 (lower is better) Translates to: CGPCTDAISQGC*SLWGVVDLWNH Trigger: GTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATGGCATCGGTGCATGGTCCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR CCA 72 bp | ATGCCATCTCCCAGGGATGCTGCTCCCTCTGGGGTGTaGTGGATTTATGGAATCACCACGGGAGGTAGACAG | + |
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Preference number: 3 (lower is better) Translates to: MPSPRDAAPSGV*WIYGITTGGRQ Trigger: CTGTCTACCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATGGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| 3UTR TCA 72 bp | TTTATTCAGCCCCACCCAGAATTAAATCAAAGGCTTTaGTACATCAAGGGACCAAACCATACACTGTGGACC | + |
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Preference number: 3 (lower is better) Translates to: FIQPHPELNQRL*YIKGPNHTLWT Trigger: GGTCCACAGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGGGGCTGAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | CCATCTCCCAGGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCGGCTGGGTGGGCGTGTaGCACTGTGCGGCCCGACAT | + |
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Preference number: 4 (lower is better) Translates to: PSPRDAAPSGVWWIYGITGWVGV*HCAARH Trigger: ATGTCGGGCCGCACAGTGCCACACGCCCACCCAGCC...GGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | AGGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACGGGAGGTTCGGCAGTGGCTGGGTaGGCGTGTGGCACTGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: RDAAPSGVWWIYGITTGGSAVAG*ACGTVR Trigger: CCGCACAGTGCCACACGCCCACCCAGCCACTGCCGA...ACCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | GGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACGGGAGGTATCGGCAGTGGCTGGGTaGGCGTGTGGCACTGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: GMLLPLGCGGFMESPREVSAVAG*ACGTVR Trigger: CCGCACAGTGCCACACGCCCACCCAGCCACTGCCGA...TACCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR GCA 90 bp | GATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACGGGAGGTAGACCTTCTCCGAAGCGCTaGTCGCCCAGACGGCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: DAAPSGVWWIYGITTGGRPSPKR*SPRRLG Trigger: CCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGG...TCTACCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CCA 90 bp | CAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGATGGCTGGGTGGGCGTGTaGCACTGTGCGGCCCGACAT | + |
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Preference number: 4 (lower is better) Translates to: QGTKPYTVDHAPMPSPRDGWVGV*HCAARH Trigger: ATGTCGGGCCGCACAGTGCCACACGCCCACCCAGCC...ATCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | TCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGAATTCGTACTCGGCAGTaGCTGGGTGGGCGTGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: SRDQTIHCGPCTDAISQGIRTRQ*LGGRVA Trigger: TGCCACACGCCCACCCAGCCACTGCCGAGTACGAAT...TCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | GGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACGGGAGGTACCAGACGGCTGGGGTTaGCAAATTCGTACTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GMLLPLGCGGFMESPREVPDGWG*QIRTRQ Trigger: CTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGG...TACCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | CCATCTCCCAGGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCGCTCGCCCAGACGGCTaGGGTTGGCAAATTCGTACT | + |
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Preference number: 4 (lower is better) Translates to: PSPRDAAPSGVWWIYGITARPDG*GWQIRT Trigger: AGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGC...GGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | ATACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCTGGCGATCCAGACGCTaGGGGTGTCGGGCAGACACC | + |
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Preference number: 4 (lower is better) Translates to: IHQGTKPYTVDHAPMPSPWRSRR*GCRADT Trigger: GGTGTCTGCCCGACACCCCCAGCGTCTGGATCGCCA...GGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CCA 90 bp | ACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGCTCGCCCAGACGGCTaGGGTTGGCAAATTCGTACT | + |
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Preference number: 4 (lower is better) Translates to: TSRDQTIHCGPCTDAISQARPDG*GWQIRT Trigger: AGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGC...CTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | TCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGAGGTCAGGATCTCTTCTaGCAGGAGGCCTTCTCCGAA | + |
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Preference number: 4 (lower is better) Translates to: SRDQTIHCGPCTDAISQGGQDLF*QEAFSE Trigger: TTCGGAGAAGGCCTCCTGCCAGAAGAGATCCTGACC...TCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CCA 90 bp | CATCTCCCAGGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACACCGTCACCTCATCTaGGGTAAAGTGGCTCACATC | + |
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Preference number: 4 (lower is better) Translates to: HLPGMLLPLGCGGFMESPHRHLI*GKVAHI Trigger: GATGTGAGCCACTTTACCCCAGATGAGGTGACGGTG...TGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CCA 90 bp | TATTCAGCCCCACCCAGAATTAAATCAAAGGCTTTGATACATCAAGGGACCAAACGCCCTCGCCAGCTCTaGCGGCCCGAGGCCGAACAT | + |
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Preference number: 4 (lower is better) Translates to: YSAPPRIKSKALIHQGTKRPRQL*RPEAEH Trigger: ATGTTCGGCCTCGGGCCGCCAGAGCTGGCGAGGGCG...TTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGGGGCTGAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CCA 90 bp | TCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGAACATCCAGAAACGCCTaGAACTTGCCTTCACTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SRDQTIHCGPCTDAISQGTSRNA*NLPSLS Trigger: GCTCAGTGAAGGCAAGTTCCAGGCGTTTCTGGATGT...TCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CCA 90 bp | ATCTCCCAGGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACTCATCTGGGGTAAAGTaGCTCACATCCAGAAACGCC | + |
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Preference number: 4 (lower is better) Translates to: ISQGCCSLWGVVDLWNHHSSGVK*LTSRNA Trigger: GGCGTTTCTGGATGTGAGCCACTTTACCCCAGATGA...GTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR TCA 90 bp | GCCATCTCCCAGGGATGCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACAGATGTAGACTTCATTaGCTTCCGTGTCCAAATGCC | + |
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Preference number: 4 (lower is better) Translates to: AISQGCCSLWGVVDLWNHRCRLH*LPCPNA Trigger: GGCATTTGGACACGGAAGTCAATGAAGTCTACATCT...GTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGCATCCCTGGGAGATGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | CCACCCAGAATTAAATCAAAGGCTTTGATACATCAAGGGACCAAACCATACACTCGGGACACGAAGCCGTaGCGATCCAGACGCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: PPRIKSKALIHQGTKPYTRDTKP*RSRRWG Trigger: CCCCCAGCGTCTGGATCGCCACGGCTTCGTGTCCCG...AGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CCA 90 bp | CAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGATTTAAGGATGCCATCATaGGATAGAGCAGCTCGAACC | + |
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Preference number: 4 (lower is better) Translates to: QGTKPYTVDHAPMPSPRDLRMPS*DRAART Trigger: GGTTCGAGCTGCTCTATCCCATGATGGCATCCTTAA...ATCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR GCA 90 bp | AAGGCTTTGATACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCAGGCAGGACATAGGTaGGACAGAACTCTCGGGACA | + |
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Preference number: 4 (lower is better) Translates to: KALIHQGTKPYTVDHAPMQAGHR*DRTLGT Trigger: TGTCCCGAGAGTTCTGTCGCACCTATGTCCTGCCTG...CATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR GCA 90 bp | TATTCAGCCCCACCCAGAATTAAATCAAAGGCTTTGATACATCAAGGGACCAAATCTTCTCCGAAGCGCTaGTCGCCCAGACGGCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: YSAPPRIKSKALIHQGTKSSPKR*SPRRLG Trigger: CCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGA...TTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGGGGCTGAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS-3UTR TCA 90 bp | ACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGAGATGTAGACTTCATTaGCTTCCGTGTCCAAATGCC | + |
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Preference number: 4 (lower is better) Translates to: TSRDQTIHCGPCTDAISQRCRLH*LPCPNA Trigger: GGCATTTGGACACGGAAGTCAATGAAGTCTACATCT...CTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | ATACATCAAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCTTAAGGATGCCATCATaGGATAGAGCAGCTCGAACC | + |
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Preference number: 4 (lower is better) Translates to: IHQGTKPYTVDHAPMPSPLRMPS*DRAART Trigger: GGTTCGAGCTGCTCTATCCCATGATGGCATCCTTAA...GGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | CCACCCAGAATTAAATCAAAGGCTTTGATACATCAAGGGACCAAACCATACACTCCAGACGGCTGGGGTTaGCAAATTCGTACTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PPRIKSKALIHQGTKPYTPDGWG*QIRTRQ Trigger: CTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGG...AGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CCA 90 bp | TATTCAGCCCCACCCAGAATTAAATCAAAGGCTTTGATACATCAAGGGACCAAAAGCCGTGATAGAGGGTaGGGGTCAGGATCTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: YSAPPRIKSKALIHQGTKSRDRG*GSGSLL Trigger: CAGAAGAGATCCTGACCCCCACCCTCTATCACGGCT...TTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGGGGCTGAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| 3UTR CAA 72 bp | GTTTATTCAGCCCCACCCAGAATTAAATCAAAGGCTTaGATACATCAAGGGACCAAACCATACACTGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: VYSAPPRIKSKA*IHQGTKPYTVD Trigger: GTCCACAGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTTTGATTTAATTCTGGGTGGGGCTGAATAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS CCA 90 bp | GCAGGAGGCCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTGGGGTTaGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCGTGTGGCACTG | + |
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Preference number: 5 (lower is better) Translates to: AGGLLRSAARPDGWG*QIRTRQWLGGRVAL Trigger: CAGTGCCACACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGGCCTCCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 90 bp | CTTCTGGCAGGAGGCCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTaGGGTTGGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCGTGTG | + |
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Preference number: 5 (lower is better) Translates to: LLAGGLLRSAARPDG*GWQIRTRQWLGGRV Trigger: CACACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGGCCTCCTGCCAGAAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 90 bp | GCCAGGGGTCCACATCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTaGGGTTGGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCGTGTG | + |
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Preference number: 5 (lower is better) Translates to: ARGPHLLRSAARPDG*GWQIRTRQWLGGRV Trigger: CACACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGATGTGGACCCCTGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS CCA 90 bp | GGTCCACATCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTGGGGTTaGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCGTGTGGCACTG | + |
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Preference number: 5 (lower is better) Translates to: GPHLLRSAARPDGWG*QIRTRQWLGGRVAL Trigger: CAGTGCCACACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGATGTGGACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS GCA 90 bp | GTGGGGGTCAGGATCTCTTCTGGCAGGAGGCCTTCTCCGAAGCGCTaGTCGCCCAGACGGCTGGGGTTGGCAAATTCGTACTCGGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: VGVRISSGRRPSPKR*SPRRLGLANSYSAV Trigger: CACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGGCCTCCTGCCAGAAGAGATCCTGACCCCCAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 90 bp | GTGCGACAGAACTCTCGGGACACGAAGCCGTGGCGATCCAGACGCTaGGGGTGTCGGGCAGACACCTCCAGCAGGTTATCCACAGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: VRQNSRDTKPWRSRR*GCRADTSSRLSTVL Trigger: GAGGACTGTGGATAACCTGCTGGAGGTGTCTGCCCGACACCCCCAGCGTCTGGATCGCCACGGCTTCGTGTCCCGAGAGTTCTGTCGCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 90 bp | AAATGCCGGCCACCCCGCGGCGCCTCCAAGTTAAGGATGCCATCATaGGATAGAGCAGCTCGAACCCGCCAGGGGTCCACATCTGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: KCRPPRGASKLRMPS*DRAARTRQGSTSAG Trigger: GCCTGCAGATGTGGACCCCTGGCGGGTTCGAGCTGCTCTATCCCATGATGGCATCCTTAACTTGGAGGCGCCGCGGGGTGGCCGGCATTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 90 bp | AAATGCCGGCCACCCCGCGGCGCCTCCAAGTTAAGGATGCCATCATaGGATAGAGCAGCTCGAACCCGCCAGGGGTCCACATCTTCTCCG | + |
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Preference number: 5 (lower is better) Translates to: KCRPPRGASKLRMPS*DRAARTRQGSTSSP Trigger: CGGAGAAGATGTGGACCCCTGGCGGGTTCGAGCTGCTCTATCCCATGATGGCATCCTTAACTTGGAGGCGCCGCGGGGTGGCCGGCATTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS-3UTR CAA 90 bp | GCTGCTCCCTCTGGGGTGTGGTGGATTTATGGAATCACCACGGGAGGTAGACAGCCCAGACGGCTGGGGTaGGCAAATTCGTACTCGGCA | + |
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Preference number: 5 (lower is better) Translates to: AAPSGVWWIYGITTGGRQPRRLG*ANSYSA Trigger: TGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGG...CTGTCTACCTCCCGTGGTGATTCCATAAATCCACCACACCCCAGAGGGAGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS-3UTR CAA 90 bp | AAGGGACCAAACCATACACTGTGGACCATGCACCGATGCCATCTCCCAGGGATGCCCAGACGGCTGGGGTaGGCAAATTCGTACTCGGCA | + |
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Preference number: 5 (lower is better) Translates to: KGPNHTLWTMHRCHLPGMPRRLG*ANSYSA Trigger: TGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGG...CATCCCTGGGAGATGGCATCGGTGCATGGTCCACAGTGTATGGTTTGGTCCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS CCA 90 bp | AGCAGGTTATCCACAGTCCTCACCGTCACCTCATCTGGGGTAAAGTaGCTCACATCCAGAAACGCCTGGAACTTGCCTTCACTGAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: SRLSTVLTVTSSGVK*LTSRNAWNLPSLSL Trigger: CAGGCTCAGTGAAGGCAAGTTCCAGGCGTTTCTGGATGTGAGCCACTTTACCCCAGATGAGGTGACGGTGAGGACTGTGGATAACCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 90 bp | AGACACCTCCAGCAGGTTATCCACAGTCCTCACCGTCACCTCATCTaGGGTAAAGTGGCTCACATCCAGAAACGCCTGGAACTTGCCTTC | + |
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Preference number: 5 (lower is better) Translates to: RHLQQVIHSPHRHLI*GKVAHIQKRLELAF Trigger: GAAGGCAAGTTCCAGGCGTTTCTGGATGTGAGCCACTTTACCCCAGATGAGGTGACGGTGAGGACTGTGGATAACCTGCTGGAGGTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS-3UTR CAA 90 bp | ATCAAAGGCTTTGATACATCAAGGGACCAAACCATACACTGTGGACCATGCACCAGAAACGCCTGGAACTaGCCTTCACTGAGCCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: IKGFDTSRDQTIHCGPCTRNAWN*PSLSLS Trigger: GCTCAGGCTCAGTGAAGGCAAGTTCCAGGCGTTTCT...GGTGCATGGTCCACAGTGTATGGTTTGGTCCCTTGATGTATCAAAGCCTTTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CAA 90 bp | GGCAGGAGGCCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTGGGGTaGGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCGTGTGGCACT | + |
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Preference number: 6 (lower is better) Translates to: GRRPSPKRCSPRRLG*ANSYSAVAGWACGT Trigger: AGTGCCACACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGGCCTCCTGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 72 bp | CCAGACGGCTGGGGTTGGCAAATTCGTACTCGGCAGTaGCTGGGTGGGCGTGTGGCACTGTGCGGCCCGACA | + |
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Preference number: 6 (lower is better) Translates to: PDGWGWQIRTRQ*LGGRVALCGPT Trigger: TGTCGGGCCGCACAGTGCCACACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS CAA 72 bp | CCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTGGGGTaGGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCG | + |
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Preference number: 6 (lower is better) Translates to: PSPKRCSPRRLG*ANSYSAVAGWA Trigger: CGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 72 bp | CTTCTCCGAAGCGCTGCTCGCCCAGACGGCTGGGGTTaGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCGT | + |
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Preference number: 6 (lower is better) Translates to: LLRSAARPDGWG*QIRTRQWLGGR Trigger: ACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS CCA 72 bp | GGAGGCCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTaGGGTTGGCAAATTCGTACTCGGCAGTGGCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: GGLLRSAARPDG*GWQIRTRQWLG Trigger: ACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGGCCTCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CAA 72 bp | TCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTGGGGTaGGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCG | + |
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Preference number: 6 (lower is better) Translates to: SSPKRCSPRRLG*ANSYSAVAGWA Trigger: CGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS CAA 90 bp | GGGTCCACATCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTGGGGTaGGCAAATTCGTACTCGGCAGTGGCTGGGTGGGCGTGTGGCACT | + |
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Preference number: 6 (lower is better) Translates to: GSTSSPKRCSPRRLG*ANSYSAVAGWACGT Trigger: AGTGCCACACGCCCACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGATGTGGACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS GCA 72 bp | CGAACCCGCCAGGGGTCCACATCTTCTCCGAAGCGCTaGTCGCCCAGACGGCTGGGGTTGGCAAATTCGTAC | + |
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Preference number: 6 (lower is better) Translates to: RTRQGSTSSPKR*SPRRLGLANSY Trigger: GTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGATGTGGACCCCTGGCGGGTTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS CCA 72 bp | AACTCTCGGGACACGAAGCCGTGGCGATCCAGACGCTaGGGGTGTCGGGCAGACACCTCCAGCAGGTTATCC | + |
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Preference number: 6 (lower is better) Translates to: NSRDTKPWRSRR*GCRADTSSRLS Trigger: GGATAACCTGCTGGAGGTGTCTGCCCGACACCCCCAGCGTCTGGATCGCCACGGCTTCGTGTCCCGAGAGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 72 bp | CCACCCCGCGGCGCCTCCAAGTTAAGGATGCCATCATaGGATAGAGCAGCTCGAACCCGCCAGGGGTCCACA | + |
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Preference number: 6 (lower is better) Translates to: PPRGASKLRMPS*DRAARTRQGST Trigger: TGTGGACCCCTGGCGGGTTCGAGCTGCTCTATCCCATGATGGCATCCTTAACTTGGAGGCGCCGCGGGGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS CCA 72 bp | CCACATCTTCTCCGAAGCGCTGCTCGCCCAGACGGCTaGGGTTGGCAAATTCGTACTCGGCAGTGGCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: PHLLRSAARPDG*GWQIRTRQWLG Trigger: ACCCAGCCACTGCCGAGTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGATGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217159.2 |
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| CDS TCA 72 bp | CAGGAGGAGCAGGAAGCAGGGAGATGTAGACTTCATTaGCTTCCGTGTCCAAATGCCGGCCACCCCGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: QEEQEAGRCRLH*LPCPNAGHPAA Trigger: CGCCGCGGGGTGGCCGGCATTTGGACACGGAAGTCAATGAAGTCTACATCTCCCTGCTTCCTGCTCCTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042790.5 ENSMUST00000217159.2 |
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| CDS GCA 72 bp | AGGATCTCTTCTGGCAGGAGGCCTTCTCCGAAGCGCTaGTCGCCCAGACGGCTGGGGTTGGCAAATTCGTAC | + |
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Preference number: 6 (lower is better) Translates to: RISSGRRPSPKR*SPRRLGLANSY Trigger: GTACGAATTTGCCAACCCCAGCCGTCTGGGCGAGCAGCGCTTCGGAGAAGGCCTCCTGCCAGAAGAGATCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 72 bp | TCATCTGGGGTAAAGTGGCTCACATCCAGAAACGCCTaGAACTTGCCTTCACTGAGCCTGAGCTCTGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: SSGVKWLTSRNA*NLPSLSLSSEA Trigger: GGCCTCAGAGCTCAGGCTCAGTGAAGGCAAGTTCCAGGCGTTTCTGGATGTGAGCCACTTTACCCCAGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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| CDS CCA 72 bp | CAGCAGGTTATCCACAGTCCTCACCGTCACCTCATCTaGGGTAAAGTGGCTCACATCCAGAAACGCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: QQVIHSPHRHLI*GKVAHIQKRLE Trigger: TTCCAGGCGTTTCTGGATGTGAGCCACTTTACCCCAGATGAGGTGACGGTGAGGACTGTGGATAACCTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042790.5 |
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