Pregenerated sensors for HSPB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004951Ensembl transcript IDs: ENSMUST00000005077.7, ENSMUST00000111155.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACACTAGGGTGGGGTCCACACCTGGAGGGAGCCTGGACACACAGAAAATCAGGGATTGACAGAGAGGGGTaGCCAGCAATGGCTATGGGA | + |
|
Preference number: 2 (lower is better) Translates to: TLGWGPHLEGAWTHRKSGIDREG*PAMAMG Trigger: TCCCATAGCCATTGCTGGCCACCCCTCTCTGTCAAT...CCCTGATTTTCTGTGTGTCCAGGCTCCCTCCAGGTGTGGACCCCACCCTAGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| 3UTR-3UTR GCA 90 bp | TGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGCTGTGATCTCCGCTGACTaGGTGACTGCTTTGGGCAAC | + |
|
Preference number: 2 (lower is better) Translates to: CMYQKSAQIDREGWPAMAVISAD*VTALGN Trigger: GTTGCCCAAAGCAGTCACGCAGTCAGCGGAGATCAC...AGCCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| 3UTR-3UTR CCA 90 bp | AATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGCTGATGGCTTCTACTTaGCTCCAGACTGTTCAGACT | + |
|
Preference number: 2 (lower is better) Translates to: NVCIKRAHRLTERGGQQWLMAST*LQTVQT Trigger: AGTCTGAACAGTCTGGAGCCAAGTAGAAGCCATCAG...CCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| 3UTR CCA 72 bp | CTACTTGGCTCCAGACTGTTCAGACTTCCCAGCTTCTaGGCCCCCAATTTGGGCGCGGGCCTCGAAAGTAAC | + |
|
Preference number: 3 (lower is better) Translates to: LLGSRLFRLPSF*APNLGAGLESN Trigger: GTTACTTTCGAGGCCCGCGCCCAAATTGGGGGCCCAGAAGCTGGGAAGTCTGAACAGTCTGGAGCCAAGTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| 3UTR CCA 72 bp | AGGACACTAGGGTGGGGTCCACACCTGGAGGGAGCCTaGACACACAGAAAATCAGGGCAAGGGTTACACATC | + |
|
Preference number: 3 (lower is better) Translates to: RTLGWGPHLEGA*THRKSGQGLHI Trigger: GATGTGTAACCCTTGCCCTGATTTTCTGTGTGTCCAGGCTCCCTCCAGGTGTGGACCCCACCCTAGTGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| 3UTR CCA 72 bp | AGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATaGCTATGGGAGATAGGCAGCAGGCTGATGGCTTCT | + |
|
Preference number: 3 (lower is better) Translates to: RAHRLTERGGQQ*LWEIGSRLMAS Trigger: AGAAGCCATCAGCCTGCTGCCTATCTCCCATAGCCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| 3UTR CCA 72 bp | CTATGGGAGATAGGCAGCAGGCTGATGGCTTCTACTTaGCTCCAGACTGTTCAGACTTCCCAGCTTCTGGGC | + |
|
Preference number: 3 (lower is better) Translates to: LWEIGSRLMAST*LQTVQTSQLLG Trigger: GCCCAGAAGCTGGGAAGTCTGAACAGTCTGGAGCCAAGTAGAAGCCATCAGCCTGCTGCCTATCTCCCATAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR GCA 90 bp | CCTGGACACACAGAAAATCAGGGCAAGGGTTACACATCCCTCCTGACCCGGGGCTCGGCTGAAGGCTGGTaGGGCCAGGGTCACCGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: PGHTENQGKGYTSLLTRGSAEGW*GQGHRR Trigger: GCGGCGGTGACCCTGGCCGCACCAGCCTTCAGCCGA...GCCCCGGGTCAGGAGGGATGTGTAACCCTTGCCCTGATTTTCTGTGTGTCCAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR CCA 90 bp | ACACTAGGGTGGGGTCCACACCTGGAGGGAGCCTGGACACACAGAAAATCAGGGCGCTCGGCTGAAGGCTaGTGCGGCCAGGGTCACCGC | + |
|
Preference number: 4 (lower is better) Translates to: TLGWGPHLEGAWTHRKSGRSAEG*CGQGHR Trigger: GCGGTGACCCTGGCCGCACCAGCCTTCAGCCGAGCG...CCCTGATTTTCTGTGTGTCCAGGCTCCCTCCAGGTGTGGACCCCACCCTAGTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR TCA 90 bp | GGCCAGCAATGGCTATGGGAGATAGGCAGCAGGCTGATGGCTTCTACTTGGCTCCCGGAGCGAAGTGGTTaGCGTCCAGGGACACGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: GQQWLWEIGSRLMASTWLPERSG*RPGTRA Trigger: GGCGCGTGTCCCTGGACGTCAACCACTTCGCTCCGG...GAGCCAAGTAGAAGCCATCAGCCTGCTGCCTATCTCCCATAGCCATTGCTGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR CCA 90 bp | ATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGCTATGCGCTCGGCTGAAGGCTaGTGCGGCCAGGGTCACCGC | + |
|
Preference number: 4 (lower is better) Translates to: MYQKSAQIDREGWPAMAMRSAEG*CGQGHR Trigger: GCGGTGACCCTGGCCGCACCAGCCTTCAGCCGAGCG...CATAGCCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS-3UTR GCA 90 bp | AATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGTCGGCTGAAGGCTGGTaGGGCCAGGGTCACCGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: NVCIKRAHRLTERGGQQWSAEGW*GQGHRR Trigger: GCGGCGGTGACCCTGGCCGCACCAGCCTTCAGCCGA...CCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS-3UTR TCA 90 bp | GTAAATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAACCGGAGCGAAGTGGTTaGCGTCCAGGGACACGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: VNVCIKRAHRLTERGGQQPERSG*RPGTRA Trigger: GGCGCGTGTCCCTGGACGTCAACCACTTCGCTCCGG...TTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATTTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| 3UTR CAA 72 bp | GCTATGGGAGATAGGCAGCAGGCTGATGGCTTCTACTaGGCTCCAGACTGTTCAGACTTCCCAGCTTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: AMGDRQQADGFY*APDCSDFPASG Trigger: CCCAGAAGCTGGGAAGTCTGAACAGTCTGGAGCCAAGTAGAAGCCATCAGCCTGCTGCCTATCTCCCATAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR TCA 90 bp | TGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGCTGGCACCCCGAAAGCTTaGTCGAAGAGGCGGCTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: CMYQKSAQIDREGWPAMAGTPKA*SKRRLC Trigger: ACACAGCCGCCTCTTCGATCAAGCTTTCGGGGTGCC...AGCCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS-3UTR CCA 90 bp | ATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGCTATGAAGAGGACACTAGGGTaGGGTCCACACCTGGAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: MYQKSAQIDREGWPAMAMKRTLG*GPHLEG Trigger: TCCCTCCAGGTGTGGACCCCACCCTAGTGTCCTCTT...CATAGCCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005077.7 |
||
| CDS-3UTR CCA 90 bp | AAATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGAGACTTCCCAGCTTCTaGGCCCCCAATTTGGGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: KCMYQKSAQIDREGWPAMRLPSF*APNLGA Trigger: CGCGCCCAAATTGGGGGCCCAGAAGCTGGGAAGTCT...CATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005077.7 |
||
| 3UTR CAA 72 bp | CAGCAGGTAAATGTATGTATCAAAAGAGCGCACAGATaGACAGAGAGGGGTGGCCAGCAATGGCTATGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: QQVNVCIKRAHR*TERGGQQWLWE Trigger: CTCCCATAGCCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATTTACCTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS-3UTR GCA 90 bp | AGAAAAACAGCAGGTAAATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGTGATCTCCGCTGACTaGGTGACTGCTTTGGGCAAC | + |
|
Preference number: 4 (lower is better) Translates to: RKTAGKCMYQKSAQIDREVISAD*VTALGN Trigger: GTTGCCCAAAGCAGTCACGCAGTCAGCGGAGATCAC...CTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATTTACCTGCTGTTTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005077.7 |
||
| CDS-3UTR CAA 90 bp | GAGGACACTAGGGTGGGGTCCACACCTGGAGGGAGCCTGGACACACAGAAAATCTCCGGAGCGAAGTGGTaGACGTCCAGGGACACGCGC | + |
|
Preference number: 5 (lower is better) Translates to: EDTRVGSTPGGSLDTQKISGAKW*TSRDTR Trigger: GCGCGTGTCCCTGGACGTCAACCACTTCGCTCCGGA...GATTTTCTGTGTGTCCAGGCTCCCTCCAGGTGTGGACCCCACCCTAGTGTCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR CAA 90 bp | ACACTAGGGTGGGGTCCACACCTGGAGGGAGCCTGGACACACAGAAAATCAGGGGGGCACCCCGAAAGCTaGATCGAAGAGGCGGCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: TLGWGPHLEGAWTHRKSGGHPES*IEEAAV Trigger: CACAGCCGCCTCTTCGATCAAGCTTTCGGGGTGCCC...CCCTGATTTTCTGTGTGTCCAGGCTCCCTCCAGGTGTGGACCCCACCCTAGTGT 61% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR CAA 90 bp | AGGGGTGGCCAGCAATGGCTATGGGAGATAGGCAGCAGGCTGATGGCTTCTACTTGCCTTTCTTCGTGCTaGCCAGTGATCTCCACCACG | + |
|
Preference number: 5 (lower is better) Translates to: RGGQQWLWEIGSRLMASTCLSSC*PVISTT Trigger: CGTGGTGGAGATCACTGGCAAGCACGAAGAAAGGCA...AGTAGAAGCCATCAGCCTGCTGCCTATCTCCCATAGCCATTGCTGGCCACCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111155.2 |
||
| CDS-3UTR CAA 90 bp | GTAAATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATCCGGAGCGAAGTGGTaGACGTCCAGGGACACGCGC | + |
|
Preference number: 5 (lower is better) Translates to: VNVCIKRAHRLTERGGQQSGAKW*TSRDTR Trigger: GCGCGTGTCCCTGGACGTCAACCACTTCGCTCCGGA...TTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATTTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS-3UTR CAA 90 bp | GTAAATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAAGGGCACCCCGAAAGCTaGATCGAAGAGGCGGCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: VNVCIKRAHRLTERGGQQGHPES*IEEAAV Trigger: CACAGCCGCCTCTTCGATCAAGCTTTCGGGGTGCCC...TTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS-3UTR CAA 90 bp | AATGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGTCCACCACGCCTTCCTaGGTCTTCACTGTGAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: NVCIKRAHRLTERGGQQWSTTPS*VFTVSS Trigger: GGAGCTCACAGTGAAGACCAAGGAAGGCGTGGTGGA...CCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS-3UTR CAA 90 bp | TGTATGTATCAAAAGAGCGCACAGATTGACAGAGAGGGGTGGCCAGCAATGGCTTGCCTTTCTTCGTGCTaGCCAGTGATCTCCACCACG | + |
|
Preference number: 5 (lower is better) Translates to: CMYQKSAQIDREGWPAMACLSSC*PVISTT Trigger: CGTGGTGGAGATCACTGGCAAGCACGAAGAAAGGCA...AGCCATTGCTGGCCACCCCTCTCTGTCAATCTGTGCGCTCTTTTGATACATACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS GCA 72 bp | GCTGAGCTGTCGGTTGAGCGCTCGGCTGAAGGCTGGTaGGGCCAGGGTCACCGCCGCGGGGCCCTCGGCGGT | + |
|
Preference number: 6 (lower is better) Translates to: AELSVERSAEGW*GQGHRRGALGG Trigger: ACCGCCGAGGGCCCCGCGGCGGTGACCCTGGCCGCACCAGCCTTCAGCCGAGCGCTCAACCGACAGCTCAGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS CCA 72 bp | GCTGCTGAGCTGTCGGTTGAGCGCTCGGCTGAAGGCTaGTGCGGCCAGGGTCACCGCCGCGGGGCCCTCGGC | + |
|
Preference number: 6 (lower is better) Translates to: AAELSVERSAEG*CGQGHRRGALG Trigger: GCCGAGGGCCCCGCGGCGGTGACCCTGGCCGCACCAGCCTTCAGCCGAGCGCTCAACCGACAGCTCAGCAGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS TCA 72 bp | GACCACTCATCGGGCAACCGGGGCACCCCGAAAGCTTaGTCGAAGAGGCGGCTGTGTGCAGGGTACCAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: DHSSGNRGTPKA*SKRRLCAGYQS Trigger: GGACTGGTACCCTGCACACAGCCGCCTCTTCGATCAAGCTTTCGGGGTGCCCCGGTTGCCCGATGAGTGGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||
| CDS CAA 72 bp | CGACCACTCATCGGGCAACCGGGGCACCCCGAAAGCTaGATCGAAGAGGCGGCTGTGTGCAGGGTACCAGTC | + |
|
Preference number: 6 (lower is better) Translates to: RPLIGQPGHPES*IEEAAVCRVPV Trigger: GACTGGTACCCTGCACACAGCCGCCTCTTCGATCAAGCTTTCGGGGTGCCCCGGTTGCCCGATGAGTGGTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005077.7 ENSMUST00000111155.2 |
||