Pregenerated sensors for HSPA9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024359Ensembl transcript IDs: ENSMUST00000025217.11
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTCAACTCAAGGTCAATGACAGACTACCTCCACTGCATGTGAAATaGGCTTCCCACCTTGAAATCACAGCCATTTCAGCACAAACCAAA | + |
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Preference number: 1 (lower is better) Translates to: SQLKVNDRLPPLHVK*ASHLEITAISAQTK Trigger: TTTGGTTTGTGCTGAAATGGCTGTGATTTCAAGGTGGGAAGCCCATTTCACATGCAGTGGAGGTAGTCTGTCATTGACCTTGAGTTGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR CCA 90 bp | GAGTCTAACTGTACAGCCCTGCCTGGCTTCAAACTGCTTCCTGAGTaGACTTTCACATCCAGCATATATGCCAGCATTTTATTAGTCACT | + |
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Preference number: 1 (lower is better) Translates to: ESNCTALPGFKLLPE*TFTSSIYASILLVT Trigger: AGTGACTAATAAAATGCTGGCATATATGCTGGATGTGAAAGTCCACTCAGGAAGCAGTTTGAAGCCAGGCAGGGCTGTACAGTTAGACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR TCA 90 bp | TATGATCTCAACTCAAGGTCAATGACAGACTACCTCCACTGCATGTaGAATGGGCTTCCCACCTTGAAATCACAGCCATTTCAGCACAAA | + |
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Preference number: 1 (lower is better) Translates to: YDLNSRSMTDYLHCM*NGLPTLKSQPFQHK Trigger: TTTGTGCTGAAATGGCTGTGATTTCAAGGTGGGAAGCCCATTTCACATGCAGTGGAGGTAGTCTGTCATTGACCTTGAGTTGAGATCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR TCA 90 bp | ATTGGCCAACCAAGAGGGTGGCTAGAGAAGTATGCCTCAGGCCCATaGGAGGCTTATATCATTCTCATATCATACTTTAAGCTATGGCTA | + |
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Preference number: 1 (lower is better) Translates to: IGQPRGWLEKYASGP*EAYIILISYFKLWL Trigger: TAGCCATAGCTTAAAGTATGATATGAGAATGATATAAGCCTCTCATGGGCCTGAGGCATACTTCTCTAGCCACCCTCTTGGTTGGCCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR GCA 90 bp | TTATTAAGACAGAGTCTAACTGTACAGCCCTGCCTGGCTTCAAACTaGTTCCTGAGTGGACTTTCACATCCAGCATATATGCCAGCATTT | + |
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Preference number: 1 (lower is better) Translates to: LLRQSLTVQPCLASN*FLSGLSHPAYMPAF Trigger: AAATGCTGGCATATATGCTGGATGTGAAAGTCCACTCAGGAAGCAGTTTGAAGCCAGGCAGGGCTGTACAGTTAGACTCTGTCTTAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR GCA 90 bp | TTTATGCCAGTACTTTTATTAAGACAGAGTCTAACTGTACAGCCCTaGCTGGCTTCAAACTGCTTCCTGAGTGGACTTTCACATCCAGCA | + |
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Preference number: 1 (lower is better) Translates to: FMPVLLLRQSLTVQP*LASNCFLSGLSHPA Trigger: TGCTGGATGTGAAAGTCCACTCAGGAAGCAGTTTGAAGCCAGGCAGGGCTGTACAGTTAGACTCTGTCTTAATAAAAGTACTGGCATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR TCA 90 bp | GCCAGTGATTTTTCTCCCTACAAAACTGATAGCAGTCATAATCCTTaGGCTATCACCATTCACAAAGGAGATCAAGAGGCTTTCAGAATT | + |
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Preference number: 1 (lower is better) Translates to: ASDFSPYKTDSSHNP*AITIHKGDQEAFRI Trigger: AATTCTGAAAGCCTCTTGATCTCCTTTGTGAATGGTGATAGCTCAAGGATTATGACTGCTATCAGTTTTGTAGGGAGAAAAATCACTGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR-3UTR TCA 90 bp | ACACAACTGCTATCCACTGACCTAGCTTCTGCACCTACAGACCATGGTACAGGTTCAACTCAAGGTCAATaGCAGACTACCTCCACTGCA | + |
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Preference number: 2 (lower is better) Translates to: TQLLSTDLASAPTDHGTGSTQGQ*QTTSTA Trigger: TGCAGTGGAGGTAGTCTGTCATTGACCTTGAGTTGA...ACCTGTACCATGGTCTGTAGGTGCAGAAGCTAGGTCAGTGGATAGCAGTTGTGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR-3UTR GCA 90 bp | GAGTGGACTTTCACATCCAGCATATATGCCAGCATTTTATTAGTCACTCCCCATGTGGCTAGAGAAGTATaGCTCAGGCCCATGAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: EWTFTSSIYASILLVTPHVAREV*LRPMRG Trigger: GCCTCTCATGGGCCTGAGGCATACTTCTCTAGCCAC...ATGGGGAGTGACTAATAAAATGCTGGCATATATGCTGGATGTGAAAGTCCACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR-3UTR TCA 90 bp | GAGTGGACTTTCACATCCAGCATATATGCCAGCATTTTATTAGTCACTCCCCATTACCTCCACTGCATGTaGAATGGGCTTCCCACCTTG | + |
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Preference number: 2 (lower is better) Translates to: EWTFTSSIYASILLVTPHYLHCM*NGLPTL Trigger: CAAGGTGGGAAGCCCATTTCACATGCAGTGGAGGTA...ATGGGGAGTGACTAATAAAATGCTGGCATATATGCTGGATGTGAAAGTCCACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR-3UTR CCA 90 bp | AGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAAATCTACCTTAATGATTaGTTCACAGCCCCATCCCAC | + |
|
Preference number: 2 (lower is better) Translates to: SCRSKYTEVILYSSALGQIYLND*FTAPSH Trigger: GTGGGATGGGGCTGTGAACCAATCATTAAGGTAGAT...TTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR-3UTR TCA 90 bp | ACAAAACTGATAGCAGTCATAATCCTTGAGCTATCACCATTCACAAAGGAGATCACAAGCATCTGCATATaGTCTCAACTCAAGGTCAAT | + |
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Preference number: 2 (lower is better) Translates to: TKLIAVIILELSPFTKEITSICI*SQLKVN Trigger: ATTGACCTTGAGTTGAGATCATATGCAGATGCTTGT...GATCTCCTTTGTGAATGGTGATAGCTCAAGGATTATGACTGCTATCAGTTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR-3UTR CCA 90 bp | CCAGTGATTTTTCTCCCTACAAAACTGATAGCAGTCATAATCCTTGAGCTATCATCATACTTTAAGCTATaGCTAACACAACTGCTATCC | + |
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Preference number: 2 (lower is better) Translates to: PVIFLPTKLIAVIILELSSYFKL*LTQLLS Trigger: GGATAGCAGTTGTGTTAGCCATAGCTTAAAGTATGA...TGATAGCTCAAGGATTATGACTGCTATCAGTTTTGTAGGGAGAAAAATCACTGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR GCA 72 bp | AGACATTGGCCAACCAAGAGGGTGGCTAGAGAAGTATaGCTCAGGCCCATGAGAGGCTTATATCATTCTCAT | + |
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Preference number: 3 (lower is better) Translates to: RHWPTKRVAREV*LRPMRGLYHSH Trigger: ATGAGAATGATATAAGCCTCTCATGGGCCTGAGGCATACTTCTCTAGCCACCCTCTTGGTTGGCCAATGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR CCA 72 bp | TGTACAGCCCTGCCTGGCTTCAAACTGCTTCCTGAGTaGACTTTCACATCCAGCATATATGCCAGCATTTTA | + |
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Preference number: 3 (lower is better) Translates to: CTALPGFKLLPE*TFTSSIYASIL Trigger: TAAAATGCTGGCATATATGCTGGATGTGAAAGTCCACTCAGGAAGCAGTTTGAAGCCAGGCAGGGCTGTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR TCA 72 bp | ACTACCTCCACTGCATGTGAAATGGGCTTCCCACCTTaGAATCACAGCCATTTCAGCACAAACCAAATCTAC | + |
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Preference number: 3 (lower is better) Translates to: TTSTACEMGFPP*NHSHFSTNQIY Trigger: GTAGATTTGGTTTGTGCTGAAATGGCTGTGATTTCAAGGTGGGAAGCCCATTTCACATGCAGTGGAGGTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR TCA 72 bp | AACTCAAGGTCAATGACAGACTACCTCCACTGCATGTaGAATGGGCTTCCCACCTTGAAATCACAGCCATTT | + |
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Preference number: 3 (lower is better) Translates to: NSRSMTDYLHCM*NGLPTLKSQPF Trigger: AAATGGCTGTGATTTCAAGGTGGGAAGCCCATTTCACATGCAGTGGAGGTAGTCTGTCATTGACCTTGAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR GCA 72 bp | GTACTTTTATTAAGACAGAGTCTAACTGTACAGCCCTaGCTGGCTTCAAACTGCTTCCTGAGTGGACTTTCA | + |
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Preference number: 3 (lower is better) Translates to: VLLLRQSLTVQP*LASNCFLSGLS Trigger: TGAAAGTCCACTCAGGAAGCAGTTTGAAGCCAGGCAGGGCTGTACAGTTAGACTCTGTCTTAATAAAAGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR TCA 72 bp | TTTTCTCCCTACAAAACTGATAGCAGTCATAATCCTTaGGCTATCACCATTCACAAAGGAGATCAAGAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: FSPYKTDSSHNP*AITIHKGDQEA Trigger: AGCCTCTTGATCTCCTTTGTGAATGGTGATAGCTCAAGGATTATGACTGCTATCAGTTTTGTAGGGAGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR CCA 72 bp | GAGGCTTATATCATTCTCATATCATACTTTAAGCTATaGCTAACACAACTGCTATCCACTGACCTAGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: EAYIILISYFKL*LTQLLSTDLAS Trigger: AGAAGCTAGGTCAGTGGATAGCAGTTGTGTTAGCCATAGCTTAAAGTATGATATGAGAATGATATAAGCCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CCA 90 bp | GCTCTTGGCCAACAAGCATCTGCATATGATCTCAACTCAAGGTCAATGACAGACCCATTCCAGCCATCCTaGGGACGGGCGGCTGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: ALGQQASAYDLNSRSMTDPFQPS*GRAAAG Trigger: CCCCGCAGCCGCCCGTCCCCAGGATGGCTGGAATGG...GTCTGTCATTGACCTTGAGTTGAGATCATATGCAGATGCTTGTTGGCCAAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR GCA 90 bp | ACACAACTGCTATCCACTGACCTAGCTTCTGCACCTACAGACCATGGTACAGGTCACGTTCCTTCTTCCTaGGGTCTTCCTCAGCGTACT | + |
|
Preference number: 4 (lower is better) Translates to: TQLLSTDLASAPTDHGTGHVPSS*GLPQRT Trigger: AGTACGCTGAGGAAGACCGCAGGAAGAAGGAACGTG...ACCTGTACCATGGTCTGTAGGTGCAGAAGCTAGGTCAGTGGATAGCAGTTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR TCA 90 bp | GCTCTTGGCCAACAAGCATCTGCATATGATCTCAACTCAAGGTCAATGACAGACGCTTCCCGAACCCTCTaGAGCGCCATGTTGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: ALGQQASAYDLNSRSMTDASRTL*SAMLSL Trigger: CAAAGACAACATGGCGCTTCAGAGGGTTCGGGAAGC...GTCTGTCATTGACCTTGAGTTGAGATCATATGCAGATGCTTGTTGGCCAAGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR TCA 90 bp | GCTTCTGCACCTACAGACCATGGTACAGGTAGCTCAGTCTTAAAGGCATCAGTTATCTCTCGTTCCCCCTaGCACACTTTAATCTCTACT | + |
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Preference number: 4 (lower is better) Translates to: ASAPTDHGTGSSVLKASVISRSP*HTLIST Trigger: AGTAGAGATTAAAGTGTGTCAGGGGGAACGAGAGAT...AACTGATGCCTTTAAGACTGAGCTACCTGTACCATGGTCTGTAGGTGCAGAAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CCA 90 bp | AGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAAACACACCTCCCTGGATaGCAGCTCCGATGGCTACAG | + |
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Preference number: 4 (lower is better) Translates to: SCRSKYTEVILYSSALGQTHLPG*QLRWLQ Trigger: CTGTAGCCATCGGAGCTGCCATCCAGGGAGGTGTGT...TTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR GCA 90 bp | GCTCTTGGCCAACAAGCATCTGCATATGATCTCAACTCAAGGTCAATGACAGACAAGTCGTTCTCCATCTaGTGTAAAGGCAACCACAGA | + |
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Preference number: 4 (lower is better) Translates to: ALGQQASAYDLNSRSMTDKSFSI*CKGNHR Trigger: TCTGTGGTTGCCTTTACAGCAGATGGAGAACGACTT...GTCTGTCATTGACCTTGAGTTGAGATCATATGCAGATGCTTGTTGGCCAAGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR TCA 90 bp | AATCACAGCCATTTCAGCACAAACCAAATCTACCTTAATGATTGGTTCACAGCCTCTTGTACAGTCTGCTaGACCTTGGGCATCCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: NHSHFSTNQIYLNDWFTASCTVC*TLGILV Trigger: GACAAGGATGCCCAAGGTTCAGCAGACTGTACAAGA...GGCTGTGAACCAATCATTAAGGTAGATTTGGTTTGTGCTGAAATGGCTGTGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CCA 90 bp | TCAGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCTGCCGCAACAAAGCTTaGTCAAAGTCTTCCCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SVVGANIQRSFFIVVLLACRNKA*SKSSPP Trigger: AGGAGGGGAAGACTTTGACCAAGCTTTGTTGCGGCA...GGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CCA 90 bp | ACAAAACTGATAGCAGTCATAATCCTTGAGCTATCACCATTCACAAAGGAGATCCAGTCTGCTGAACCTTaGGCATCCTTGTCATGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TKLIAVIILELSPFTKEIQSAEP*ASLSCH Trigger: GTGGCATGACAAGGATGCCCAAGGTTCAGCAGACTG...GATCTCCTTTGTGAATGGTGATAGCTCAAGGATTATGACTGCTATCAGTTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR TCA 90 bp | TCAGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAGTGGCCTGTCGCTGTaGATCATTGAAATAAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SVVGANIQRSFFIVVLLASGLSL*IIEISR Trigger: CCTGCTTATTTCAATGATTCACAGCGACAGGCCACT...GGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR GCA 90 bp | GAGTGGACTTTCACATCCAGCATATATGCCAGCATTTTATTAGTCACTCCCCATGTTGCTCACGACCAGTaGCTTTATCTTTGGCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: EWTFTSSIYASILLVTPHVAHDQ*LYLWQK Trigger: TTTCTGCCAAAGATAAAGGCACTGGTCGTGAGCAAC...ATGGGGAGTGACTAATAAAATGCTGGCATATATGCTGGATGTGAAAGTCCACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR GCA 90 bp | AATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAACAAGCATCTGCATAGTTTCAATGACGCCTaGTGTAGGGAAGATGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: NIQRSFFIVVLLANKHLHSFNDA*CREDAA Trigger: GGCAGCATCTTCCCTACAGCAGGCGTCATTGAAACT...ATGCAGATGCTTGTTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR TCA 90 bp | GCTCTTGGCCAACAAGCATCTGCATATGATCTCAACTCAAGGTCAATGACAGACGAATTCCAATCAAAGTaGACTGTCCTAGAAGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: ALGQQASAYDLNSRSMTDEFQSK*TVLEVC Trigger: ACAAACTTCTAGGACAGTTCACTTTGATTGGAATTC...GTCTGTCATTGACCTTGAGTTGAGATCATATGCAGATGCTTGTTGGCCAAGAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CCA 90 bp | AATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAACAAGCATCTGCATAGCTTGCCGTTTTGCTaGCATACCAACAAGTCGTTC | + |
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Preference number: 4 (lower is better) Translates to: NIQRSFFIVVLLANKHLHSLPFC*HTNKSF Trigger: GAACGACTTGTTGGTATGCCAGCAAAACGGCAAGCT...ATGCAGATGCTTGTTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR TCA 90 bp | AATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAACAAGCATCTGCATCAACCACTGCACCCTTaGTTGCTTCTGATGCATAAT | + |
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Preference number: 4 (lower is better) Translates to: NIQRSFFIVVLLANKHLHQPLHP*LLLMHN Trigger: ATTATGCATCAGAAGCAATCAAGGGTGCAGTGGTTG...ATGCAGATGCTTGTTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR GCA 90 bp | TCAGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAAGTTGATGTCAGTCTaGACAGATGAGGAAAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SVVGANIQRSFFIVVLLAKLMSV*TDEESS Trigger: TGAACTTTCCTCATCTGTGCAGACTGACATCAACTT...GGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR GCA 90 bp | CTTCCTGAGTGGACTTTCACATCCAGCATATATGCCAGCATTTTATTAGTCACTAGCTTCATATTCAAATaGTTTGGTCCAGAAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: LPEWTFTSSIYASILLVTSFIFK*FGPEAS Trigger: GGATGCTTCTGGACCAAAGCATTTGAATATGAAGCT...AGTGACTAATAAAATGCTGGCATATATGCTGGATGTGAAAGTCCACTCAGGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR GCA 90 bp | AATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAACAAGCATCTGCATTGGATTACAATCTGTTaGTCACGACCAGTGCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: NIQRSFFIVVLLANKHLHWITIC*SRPVPL Trigger: TAAAGGCACTGGTCGTGAGCAACAGATTGTAATCCA...ATGCAGATGCTTGTTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CCA 90 bp | CCAGTGATTTTTCTCCCTACAAAACTGATAGCAGTCATAATCCTTGAGCTATCAGCAGTAGAAAACACCTaGCTCTTTTTGGTTGGAATA | + |
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Preference number: 4 (lower is better) Translates to: PVIFLPTKLIAVIILELSAVENT*LFLVGI Trigger: TATTCCAACCAAAAAGAGCCAGGTGTTTTCTACTGC...TGATAGCTCAAGGATTATGACTGCTATCAGTTTTGTAGGGAGAAAAATCACTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| 3UTR CAA 72 bp | GCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTaGGCCAACAAGCATCTGCATATGATCTCAACTCAA | + |
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Preference number: 4 (lower is better) Translates to: ANIQRSFFIVVL*ANKHLHMISTQ Trigger: TTGAGTTGAGATCATATGCAGATGCTTGTTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS GCA 90 bp | ATTTCGAAGAGTTTCAATGACGCCTGCTGTAGGGAAGATGCTGCCTaGCTGATGTTCTCTCCTGTCTCACTGTCCTTTCCAGCAAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: ISKSFNDACCREDAA*LMFSPVSLSFPARS Trigger: GCTCCTTGCTGGAAAGGACAGTGAGACAGGAGAGAACATCAGGCAGGCAGCATCTTCCCTACAGCAGGCGTCATTGAAACTCTTCGAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | AGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAAGTGCCGCAACAAAGCTaGGTCAAAGTCTTCCCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SCRSKYTEVILYSSALGQVPQQS*VKVFPS Trigger: GGAGGGGAAGACTTTGACCAAGCTTTGTTGCGGCAC...TTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | AGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAATGGATTGGTGACAGCTaGCCGTTTTGCTGGCATACC | + |
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Preference number: 5 (lower is better) Translates to: SCRSKYTEVILYSSALGQWIGDS*PFCWHT Trigger: GGTATGCCAGCAAAACGGCAAGCTGTCACCAATCCA...TTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | GAGTGGACTTTCACATCCAGCATATATGCCAGCATTTTATTAGTCACTCCCCATCTGGATTACAATCTGTaGCTCACGACCAGTGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: EWTFTSSIYASILLVTPHLDYNL*LTTSAF Trigger: AAAGGCACTGGTCGTGAGCAACAGATTGTAATCCAG...ATGGGGAGTGACTAATAAAATGCTGGCATATATGCTGGATGTGAAAGTCCACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | AATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAACAAGCATCTGCATACCCCTGTCTCTCTCTaGAACTCCTTGACAATGTGC | + |
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Preference number: 5 (lower is better) Translates to: NIQRSFFIVVLLANKHLHTPVSL*NSLTMC Trigger: GCACATTGTCAAGGAGTTCAAGAGAGAGACAGGGGT...ATGCAGATGCTTGTTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | ACAAAACTGATAGCAGTCATAATCCTTGAGCTATCACCATTCACAAAGGAGATCACCCAAGCATCACCATaGGAGGCACGGACAATTTTA | + |
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Preference number: 5 (lower is better) Translates to: TKLIAVIILELSPFTKEITQASP*EARTIL Trigger: TAAAATTGTCCGTGCCTCCAATGGTGATGCTTGGGT...GATCTCCTTTGTGAATGGTGATAGCTCAAGGATTATGACTGCTATCAGTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | ACAAAACTGATAGCAGTCATAATCCTTGAGCTATCACCATTCACAAAGGAGATCCCAGTGCCTTTATCTTaGGCAGAAACGTGCACAATC | + |
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Preference number: 5 (lower is better) Translates to: TKLIAVIILELSPFTKEIPVPLS*AETCTI Trigger: GATTGTGCACGTTTCTGCCAAAGATAAAGGCACTGG...GATCTCCTTTGTGAATGGTGATAGCTCAAGGATTATGACTGCTATCAGTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | AATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAACAAGCATCTGCATTCTTCCTTTAGCTTGTaGCACTCATCAGCAGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: NIQRSFFIVVLLANKHLHSSFSL*HSSAGN Trigger: GTTGCCTGCTGATGAGTGCAACAAGCTAAAGGAAGA...ATGCAGATGCTTGTTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | TCAGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAAGGTATTGTTTGGATaGGTGACAGCTTGCCGTTTT | + |
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Preference number: 5 (lower is better) Translates to: SVVGANIQRSFFIVVLLAKVLFG*VTACRF Trigger: AAAACGGCAAGCTGTCACCAATCCAAACAATACCTT...GGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | AATCACAGCCATTTCAGCACAAACCAAATCTACCTTAATGATTGGTTCACAGCCATGCTCCAATCTGACTaGGAGAATAGAGTTTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: NHSHFSTNQIYLNDWFTAMLQSD*ENRVFH Trigger: ATGGAAAACTCTATTCTCCAAGTCAGATTGGAGCAT...GGCTGTGAACCAATCATTAAGGTAGATTTGGTTTGTGCTGAAATGGCTGTGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS-3UTR CAA 90 bp | AGTTGTAGGAGCAAATATACAGAGGTCATTCTTTATAGTAGTGCTCTTGGCCAACACTTTAATCTCTACTaGAGTTTGTCCATCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SCRSKYTEVILYSSALGQHFNLY*SLSISS Trigger: GCTGCTGATGGACAAACTCAAGTAGAGATTAAAGTG...TTGGCCAAGAGCACTACTATAAAGAATGACCTCTGTATATTTGCTCCTACAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS GCA 72 bp | AGTTTCAATGACGCCTGCTGTAGGGAAGATGCTGCCTaGCTGATGTTCTCTCCTGTCTCACTGTCCTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SFNDACCREDAA*LMFSPVSLSFP Trigger: TGGAAAGGACAGTGAGACAGGAGAGAACATCAGGCAGGCAGCATCTTCCCTACAGCAGGCGTCATTGAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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| CDS GCA 72 bp | CAGAAGACTGGATTACAATCTGTTGCTCACGACCAGTaGCTTTATCTTTGGCAGAAACGTGCACAATCCCAT | + |
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Preference number: 6 (lower is better) Translates to: QKTGLQSVAHDQ*LYLWQKRAQSH Trigger: ATGGGATTGTGCACGTTTCTGCCAAAGATAAAGGCACTGGTCGTGAGCAACAGATTGTAATCCAGTCTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025217.11 |
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