Pregenerated sensors for HSPA8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015656Ensembl transcript IDs: ENSMUST00000015800.16, ENSMUST00000117557.8
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AATTTAAATAGTTTTATTATTCCATGTTACTTGTTTTaGGTCCCTGTGGAACAAAGCTACACCTTCTTGGAC | + |
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Preference number: 3 (lower is better) Translates to: NLNSFIIPCYLF*VPVEQSYTFLD Trigger: GTCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAACTATTTAAATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | TTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGAGGGACCCCACGGGGTaGTGGAGGGATGCCTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: LFHVTCFGSLWNKATPSWRDPTG*WRDACE Trigger: CTCACAGGCATCCCTCCAGCACCCCGTGGGGTCCCT...CCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | TTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGCTGGAGGAGAGGGTaGGCTTGGCCCGCTCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLFHVTCFGSLWNKATPSCWRRG*AWPARR Trigger: CCTGCGAGCGGGCCAAGCGCACCCTCTCCTCCAGCA...AGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | AGTTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTGCTGGAGGAGAGGGTaGGCTTGGCCCGCTCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SFIIPCYLFWVPVEQSYTCWRRG*AWPARR Trigger: CCTGCGAGCGGGCCAAGCGCACCCTCTCCTCCAGCA...GGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR TCA 90 bp | ATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGACGGCATAGGACTCCAGTaGGTTCTTGGAGGAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: IPCYLFWVPVEQSYTFLDGIGLQ*VLGGNL Trigger: AAGGTTTCCTCCAAGAACTCACTGGAGTCCTATGCC...GTCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR TCA 90 bp | TTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGGGCATAGGACTCCAGTaGGTTCTTGGAGGAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: LFHVTCFGSLWNKATPSWGIGLQ*VLGGNL Trigger: AAGGTTTCCTCCAAGAACTCACTGGAGTCCTATGCC...CCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | CATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGACTGACGAAACCTTATCTCTCTaGTTCTCATCCTCAGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: HVTCFGSLWNKATPSWTDETLSL*FSSSAL Trigger: CAAGGCTGAGGATGAGAAGCAGAGAGATAAGGTTTC...GTCAGTCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | TATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGATCCAGCATCTTTTGTTaGCTTTCCGAGGTACGCTTC | + |
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Preference number: 4 (lower is better) Translates to: YSMLLVLGPCGTKLHLLGSSIFC*LSEVRF Trigger: GAAGCGTACCTCGGAAAGGCAACAAAAGATGCTGGA...TCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117557.8 |
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| CDS-3UTR CCA 90 bp | TCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGACTGACTCCAGTGAGTTCTTaGAGGAAACCTTATCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: SMLLVLGPCGTKLHLLGLTPVSS*RKPYLS Trigger: AGAGAGATAAGGTTTCCTCCAAGAACTCACTGGAGT...CAGTCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR TCA 90 bp | ATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGACCTCCAGCTGTTGATTTaGCCTCAAAAATTCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: IPCYLFWVPVEQSYTFLDLQLLI*PQKFHP Trigger: AGGATGGAATTTTTGAGGTCAAATCAACAGCTGGAG...GTCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | GTTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTATTTCCACCTTTCCATaGTGGAAGACACCCACACAG | + |
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Preference number: 4 (lower is better) Translates to: VLLFHVTCFGSLWNKATPISTFP*WKTPTQ Trigger: CTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAAAT...AGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | TTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGACTTGTTCTCCTTTCCTGTaGTCTTATCTACAGCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: FHVTCFGSLWNKATPSWTCSPFL*SYLQQK Trigger: TTTCTGCTGTAGATAAGAGCACAGGAAAGGAGAACA...AGTCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | TTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGTGTTCTCCTTTCCTGTaGTCTTATCTACAGCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LFHVTCFGSLWNKATPSWCSPFL*SYLQQK Trigger: TTTCTGCTGTAGATAAGAGCACAGGAAAGGAGAACA...CCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | TTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCGAAACCTTATCTCTCTaGTTCTCATCCTCAGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: FIIPCYLFWVPVEQSYTFETLSL*FSSSAL Trigger: CAAGGCTGAGGATGAGAAGCAGAGAGATAAGGTTTC...GAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR GCA 90 bp | ATAGTTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACAATTTCCACCTTTCCATaGTGGAAGACACCCACACAG | + |
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Preference number: 4 (lower is better) Translates to: IVLLFHVTCFGSLWNKATISTFP*WKTPTQ Trigger: CTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAAAT...TGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAACTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR CCA 90 bp | GTTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTACTCCAGTGAGTTCTTaGAGGAAACCTTATCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: VLLFHVTCFGSLWNKATPTPVSS*RKPYLS Trigger: AGAGAGATAAGGTTTCCTCCAAGAACTCACTGGAGT...AGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR TCA 90 bp | TTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTCCAGCTGTTGATTTaGCCTCAAAAATTCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: FYYSMLLVLGPCGTKLHLLQLLI*PQKFHP Trigger: AGGATGGAATTTTTGAGGTCAAATCAACAGCTGGAG...AAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR CAA 90 bp | TATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGAGACTCCAGTGAGTTCTaGGAGGAAACCTTATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: YSMLLVLGPCGTKLHLLGDSSEF*EETLSL Trigger: GAGAGATAAGGTTTCCTCCAAGAACTCACTGGAGTC...TCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR CAA 90 bp | TTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTCTTGGCGGTTACCCTGGTCATaGGCAATAATTTCCACCTTT | + |
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Preference number: 5 (lower is better) Translates to: LFHVTCFGSLWNKATPSWRLPWS*AIISTF Trigger: AAAGGTGGAAATTATTGCCAATGACCAGGGTAACCG...CCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR CAA 90 bp | GTTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTTCCAGCATCTTTTGTaGCCTTTCCGAGGTACGCTT | + |
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Preference number: 5 (lower is better) Translates to: VLLFHVTCFGSLWNKATPFQHLL*PFRGTL Trigger: AAGCGTACCTCGGAAAGGCAACAAAAGATGCTGGAA...AGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117557.8 |
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| CDS-3UTR CAA 90 bp | GTTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTCGGTTACCCTGGTCATaGGCAATAATTTCCACCTTT | + |
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Preference number: 5 (lower is better) Translates to: VLLFHVTCFGSLWNKATPRLPWS*AIISTF Trigger: AAAGGTGGAAATTATTGCCAATGACCAGGGTAACCG...AGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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| CDS-3UTR CAA 90 bp | TTTTATTATTCCATGTTACTTGTTTTGGGTCCCTGTGGAACAAAGCTACACCTTGACTCCAGTGAGTTCTaGGAGGAAACCTTATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: FYYSMLLVLGPCGTKLHLDSSEF*EETLSL Trigger: GAGAGATAAGGTTTCCTCCAAGAACTCACTGGAGTC...AAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015800.16 ENSMUST00000117557.8 |
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