Pregenerated sensors for HSPA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026864Ensembl transcript IDs: ENSMUST00000028222.13
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTACCTGGGATCGAGAGACAGGTGGATCTGAGTTCAAGGCCAGCCTaGTCTACAGTGTTGAGTTCGAGGACAGACAAAGCTAAAGACCTT | + |
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Preference number: 1 (lower is better) Translates to: VPGIERQVDLSSRPA*STVLSSRTDKAKDL Trigger: AAGGTCTTTAGCTTTGTCTGTCCTCGAACTCAACACTGTAGACCAGGCTGGCCTTGAACTCAGATCCACCTGTCTCTCGATCCCAGGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR CCA 90 bp | AAAGTCAGAAAGGGCCATGGTGGTATACACTTTAATCCCAGTACCTaGGATCGAGAGACAGGTGGATCTGAGTTCAAGGCCAGCCTGGTC | + |
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Preference number: 1 (lower is better) Translates to: KVRKGHGGIHFNPST*DRETGGSEFKASLV Trigger: GACCAGGCTGGCCTTGAACTCAGATCCACCTGTCTCTCGATCCCAGGTACTGGGATTAAAGTGTATACCACCATGGCCCTTTCTGACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR TCA 90 bp | AACCAAACGTCTTCAAATATAAATTACAAACCAAATACTACCCAGTaGTATGGACTCTTTAAGTATATCACAGGCCTGTGGGTACACACA | + |
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Preference number: 1 (lower is better) Translates to: NQTSSNINYKPNTTQ*YGLFKYITGLWVHT Trigger: TGTGTGTACCCACAGGCCTGTGATATACTTAAAGAGTCCATATCACTGGGTAGTATTTGGTTTGTAATTTATATTTGAAGACGTTTGGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR-3UTR TCA 90 bp | GCATGCACCAGCCTCAGATCCCTAGATTGGGCTTGGACTAAACACAGCCTGGAACCTGGTCTACAGTGTTaGGTTCGAGGACAGACAAAG | + |
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Preference number: 2 (lower is better) Translates to: ACTSLRSLDWAWTKHSLEPGLQC*VRGQTK Trigger: CTTTGTCTGTCCTCGAACTCAACACTGTAGACCAGG...TTCCAGGCTGTGTTTAGTCCAAGCCCAATCTAGGGATCTGAGGCTGGTGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR-3UTR TCA 90 bp | GTATACACTTTAATCCCAGTACCTGGGATCGAGAGACAGGTGGATCTGAGTTCAGAAGAAAGACACACCTaGGAATCCAGTCTTAAATTT | + |
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Preference number: 2 (lower is better) Translates to: VYTLIPVPGIERQVDLSSEERHT*ESSLKF Trigger: AAATTTAAGACTGGATTCTCAGGTGTGTCTTTCTTC...TGAACTCAGATCCACCTGTCTCTCGATCCCAGGTACTGGGATTAAAGTGTATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR CCA 72 bp | ATCGAGAGACAGGTGGATCTGAGTTCAAGGCCAGCCTaGTCTACAGTGTTGAGTTCGAGGACAGACAAAGCT | + |
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Preference number: 3 (lower is better) Translates to: IERQVDLSSRPA*STVLSSRTDKA Trigger: AGCTTTGTCTGTCCTCGAACTCAACACTGTAGACCAGGCTGGCCTTGAACTCAGATCCACCTGTCTCTCGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR-3UTR CAA 90 bp | TACACTTTAATCCCAGTACCTGGGATCGAGAGACAGGTGGATCTGAGTTCAAGGATGTGCATGACCCAATaGTTAAATAGACCATATCCA | + |
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Preference number: 3 (lower is better) Translates to: YTLIPVPGIERQVDLSSRMCMTQ*LNRPYP Trigger: TGGATATGGTCTATTTAACAATTGGGTCATGCACAT...CCTTGAACTCAGATCCACCTGTCTCTCGATCCCAGGTACTGGGATTAAAGTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR TCA 72 bp | TGTTGCCAGTCTAAACAATCCTCTCAACCAATCCTTTaGCCATCAACTGACGTTTGTAATATCAGGGTTGCC | + |
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Preference number: 3 (lower is better) Translates to: CCQSKQSSQPIL*PSTDVCNIRVA Trigger: GGCAACCCTGATATTACAAACGTCAGTTGATGGTCAAAGGATTGGTTGAGAGGATTGTTTAGACTGGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR-3UTR CAA 90 bp | TCTCCTGATGTTGCCAGTCTAAACAATCCTCTCAACCAATCCTTTGACCATCAACCATGTTCAAAAGAATaGGACTTAGGCATCCTGAAA | + |
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Preference number: 3 (lower is better) Translates to: SPDVASLNNPLNQSFDHQPCSKE*DLGILK Trigger: TTTCAGGATGCCTAAGTCCAATTCTTTTGAACATGG...TTGATGGTCAAAGGATTGGTTGAGAGGATTGTTTAGACTGGCAACATCAGGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| 3UTR TCA 72 bp | TCTTCAAATATAAATTACAAACCAAATACTACCCAGTaGTATGGACTCTTTAAGTATATCACAGGCCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: SSNINYKPNTTQ*YGLFKYITGLW Trigger: CCACAGGCCTGTGATATACTTAAAGAGTCCATATCACTGGGTAGTATTTGGTTTGTAATTTATATTTGAAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR GCA 90 bp | TACACTTTAATCCCAGTACCTGGGATCGAGAGACAGGTGGATCTGAGTTCAAGGCGATGCCGACCACCGTaGCCACATCCTCCTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: YTLIPVPGIERQVDLSSRRCRPP*PHPPSC Trigger: ACAAGAAGGAGGATGTGGGCACGGTGGTCGGCATCG...CCTTGAACTCAGATCCACCTGTCTCTCGATCCCAGGTACTGGGATTAAAGTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR GCA 90 bp | AGTGCTAGGCAACGCTCACCACTGAGCATGCACCAGCCTCAGATCCCTAGATTGAAGAACTTGATGTCCTaGTGCACCGAAGGGTCATTC | + |
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Preference number: 4 (lower is better) Translates to: SARQRSPLSMHQPQIPRLKNLMS*CTEGSF Trigger: GAATGACCCTTCGGTGCAGCAGGACATCAAGTTCTT...CAATCTAGGGATCTGAGGCTGGTGCATGCTCAGTGGTGAGCGTTGCCTAGCACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR GCA 90 bp | GCATGCACCAGCCTCAGATCCCTAGATTGGGCTTGGACTAAACACAGCCTGGAAGCCAGCATCTTTGGTTaGTTGTCGCTGGGCATCATT | + |
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Preference number: 4 (lower is better) Translates to: ACTSLRSLDWAWTKHSLEASIFG*LSLGII Trigger: AATGATGCCCAGCGACAAGCAACCAAAGATGCTGGC...TTCCAGGCTGTGTTTAGTCCAAGCCCAATCTAGGGATCTGAGGCTGGTGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR TCA 90 bp | TCTCCTGATGTTGCCAGTCTAAACAATCCTCTCAACCAATCCTTTGACCATCAATCTCGGGGTTGGACGTaGGTTGGTTCTTGGCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: SPDVASLNNPLNQSFDHQSRGWT*VGSWPH Trigger: ATGCGGCCAAGAACCAACTCACGTCCAACCCCGAGA...TTGATGGTCAAAGGATTGGTTGAGAGGATTGTTTAGACTGGCAACATCAGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR GCA 90 bp | GCATGCACCAGCCTCAGATCCCTAGATTGGGCTTGGACTAAACACAGCCTGGAAATATGCAATAGCAGCTaGTGTAGGCTCATTGATGAT | + |
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Preference number: 4 (lower is better) Translates to: ACTSLRSLDWAWTKHSLEICNSS*CRLIDD Trigger: ATCATCAATGAGCCTACAGCAGCTGCTATTGCATAT...TTCCAGGCTGTGTTTAGTCCAAGCCCAATCTAGGGATCTGAGGCTGGTGCATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CCA 90 bp | GCATGCACCAGCCTCAGATCCCTAGATTGGGCTTGGACTAAACACAGCCTGGAAACAGTAACAACTGCATaGGTAACCTTCTTTCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: ACTSLRSLDWAWTKHSLETVTTA*VTFFPK Trigger: TTTGGGAAAGAAGGTTACCCATGCAGTTGTTACTGT...TTCCAGGCTGTGTTTAGTCCAAGCCCAATCTAGGGATCTGAGGCTGGTGCATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CCA 90 bp | GCATGCACCAGCCTCAGATCCCTAGATTGGGCTTGGACTAAACACAGCCTGGAATACCACAGTGTTCCTTaGAATCAGTTTTGTCATGAC | + |
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Preference number: 4 (lower is better) Translates to: ACTSLRSLDWAWTKHSLEYHSVP*NQFCHD Trigger: GTCATGACAAAACTGATTCCAAGGAACACTGTGGTA...TTCCAGGCTGTGTTTAGTCCAAGCCCAATCTAGGGATCTGAGGCTGGTGCATGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR TCA 90 bp | ATAAAGCTAAATAAATCTCCAAGAAGTGGTACCACCCCACAGCATCACAAGCCCCCGAGTAAGGGTCTCTaGGAAGTCTTCTCCTTCGAA | + |
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Preference number: 4 (lower is better) Translates to: IKLNKSPRSGTTPQHHKPPSKGL*EVFSFE Trigger: TTCGAAGGAGAAGACTTCTCAGAGACCCTTACTCGG...GGGCTTGTGATGCTGTGGGGTGGTACCACTTCTTGGAGATTTATTTAGCTTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR GCA 90 bp | ATAAAGCTAAATAAATCTCCAAGAAGTGGTACCACCCCACAGCATCACAAGCCCAACTTGATGTCCTGCTaGACCGAAGGGTCATTCCAA | + |
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Preference number: 4 (lower is better) Translates to: IKLNKSPRSGTTPQHHKPNLMSC*TEGSFQ Trigger: TTGGAATGACCCTTCGGTGCAGCAGGACATCAAGTT...GGGCTTGTGATGCTGTGGGGTGGTACCACTTCTTGGAGATTTATTTAGCTTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR GCA 90 bp | TCTCCTGATGTTGCCAGTCTAAACAATCCTCTCAACCAATCCTTTGACCATCAATCACGCCGGAGTTTCTaGACAGCTCTGTTGTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SPDVASLNNPLNQSFDHQSRRSF*TALLSF Trigger: GAAAGACAACAGAGCTGTGCAGAAACTCCGGCGTGA...TTGATGGTCAAAGGATTGGTTGAGAGGATTGTTTAGACTGGCAACATCAGGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR TCA 90 bp | TACACTTTAATCCCAGTACCTGGGATCGAGAGACAGGTGGATCTGAGTTCAAGGCTCCAATCTGGTTCTTaGGAGAATAAGCATAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: YTLIPVPGIERQVDLSSRLQSGS*ENKHSF Trigger: AAAGCTATGCTTATTCTCTCAAGAACCAGATTGGAG...CCTTGAACTCAGATCCACCTGTCTCTCGATCCCAGGTACTGGGATTAAAGTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CAA 90 bp | GTATACACTTTAATCCCAGTACCTGGGATCGAGAGACAGGTGGATCTGAGTTCACCCACATCCTCCTTCTaGTCCTCCTCCTCGGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: VYTLIPVPGIERQVDLSSPTSSF*SSSSAR Trigger: GCGGGCCGAGGAGGAGGACAAGAAGGAGGATGTGGG...TGAACTCAGATCCACCTGTCTCTCGATCCCAGGTACTGGGATTAAAGTGTATAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CAA 90 bp | GCATGCACCAGCCTCAGATCCCTAGATTGGGCTTGGACTAAACACAGCCTGGAAACCGTGTTCTCGGGGTaGGACGTGAGTTGGTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: ACTSLRSLDWAWTKHSLETVFSG*DVSWFL Trigger: CAAGAACCAACTCACGTCCAACCCCGAGAACACGGT...TTCCAGGCTGTGTTTAGTCCAAGCCCAATCTAGGGATCTGAGGCTGGTGCATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CAA 90 bp | TCTCCTGATGTTGCCAGTCTAAACAATCCTCTCAACCAATCCTTTGACCATCAAGACGTGAGTTGGTTCTaGGCCGCATCGCCAATCAGA | + |
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Preference number: 5 (lower is better) Translates to: SPDVASLNNPLNQSFDHQDVSWF*AASPIR Trigger: TCTGATTGGCGATGCGGCCAAGAACCAACTCACGTC...TTGATGGTCAAAGGATTGGTTGAGAGGATTGTTTAGACTGGCAACATCAGGAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CAA 90 bp | ATAAAGCTAAATAAATCTCCAAGAAGTGGTACCACCCCACAGCATCACAAGCCCATAGTGCCAGCATCTTaGGTTGCTTGTCGCTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: IKLNKSPRSGTTPQHHKPIVPAS*VACRWA Trigger: TGCCCAGCGACAAGCAACCAAAGATGCTGGCACTAT...GGGCTTGTGATGCTGTGGGGTGGTACCACTTCTTGGAGATTTATTTAGCTTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CAA 90 bp | GCATGCACCAGCCTCAGATCCCTAGATTGGGCTTGGACTAAACACAGCCTGGAAAGGCGGTTTTGGTCATaGGTAATTGTGATTTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: ACTSLRSLDWAWTKHSLERRFWS*VIVILF Trigger: AAACAAAATCACAATTACCAATGACCAAAACCGCCT...TTCCAGGCTGTGTTTAGTCCAAGCCCAATCTAGGGATCTGAGGCTGGTGCATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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| CDS-3UTR CAA 90 bp | GTATACACTTTAATCCCAGTACCTGGGATCGAGAGACAGGTGGATCTGAGTTCAAATTTCAATCCTTGCTaGATGCTGAGAAGACAAGGC | + |
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Preference number: 5 (lower is better) Translates to: VYTLIPVPGIERQVDLSSNFNPC*MLRRQG Trigger: GCCTTGTCTTCTCAGCATCAAGCAAGGATTGAAATT...TGAACTCAGATCCACCTGTCTCTCGATCCCAGGTACTGGGATTAAAGTGTATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028222.13 |
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