Pregenerated sensors for HSPA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059970Ensembl transcript IDs: ENSMUST00000080449.7, ENSMUST00000219555.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGGAAGAGATCGGCGTTaGGCTCCTCGAAGCGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDGRDRR*APRSGR Trigger: GCGCCCGCTTCGAGGAGCTCAACGCCGATCTCTTCC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCTGCGCTCTGCACCTTaGCCCCCAGGTAGGCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDLRSAP*PPGRLR Trigger: CCGAAGCCTACCTGGGGGGCAAGGTGCAGAGCGCAG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCTTCGCCACCCAGGTaGGTATCGCCGGCCGTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSSPPR*VSPAVD Trigger: GTCCACGGCCGGCGATACCCACCTGGGTGGCGAAGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGGGTTCATGGCCACTTaGTTCTTGGCGGCGTCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDGFMAT*FLAASP Trigger: CGGCGACGCCGCCAAGAACCAAGTGGCCATGAACCC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCTATGCTGGCCTGCGTaGACGAGCTCAGGGTGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDLCWPA*TSSGCA Trigger: AGCGCACCCTGAGCTCGTCCACGCAGGCCAGCATAG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCGCCCAGGTCAAAGATaGGCACGTTCTTCTCGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRPGQR*ARSSRR Trigger: GCGGCGAGAAGAACGTGCTCATCTTTGACCTGGGCG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCCTCCGCCAGGTGGCTaGCCATACGGTTGTCGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDPPPGG*PYGCRS Trigger: ACTTCGACAACCGTATGGTCAGCCACCTGGCGGAGG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGCGAGTCGATCTCTATaGTGGCCTGCGTGGACGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDASRSL*WPAWTS Trigger: GCTCGTCCACGCAGGCCAGCATAGAGATCGACTCGC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCGCCCTCGTACACTTaGACCAGCACGCTGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSPSYT*TSTLLW Trigger: CCAGAGCAGCGTGCTGGTGCAAGTGTACGAGGGCGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTACCGCTCCGCCTCCTaGACCATCCGGTCAATGTCG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDYRSAS*TIRSMS Trigger: CGACATTGACCGGATGGTGCAGGAGGCGGAGCGGTA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACAGTCCACTTCCTCGATaGTGGGCCCTCCAGAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSPLPR*WALQRS Trigger: GCTCCTCTGGAGGGCCCACCATCGAGGAAGTGGACT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCTTGTGTTTGCGCTTaGACTCCTCCGCCAGGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSCVCA*TPPPGG Trigger: GCCACCTGGCGGAGGAGTTCAAGCGCAAACACAAGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACATCTCTATGCTGGCCTaGGTGGACGAGCTCAGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDISMLA*VDELRV Trigger: CACCCTGAGCTCGTCCACGCAGGCCAGCATAGAGAT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACAACTCCTCCGCCAGGTaGCTGACCATACGGTTGTCG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDNSSAR*LTIRLS Trigger: CGACAACCGTATGGTCAGCCACCTGGCGGAGGAGTT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGGCCCTTGTCTAGCTTaGCATCGCGCAGCGCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDGPCLA*HRAAPF Trigger: AAAAGGCGCTGCGCGATGCCAAGCTAGACAAGGGCC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTATCGGACTGCACTGTaGCGTCCTCGAACTTCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDYRTAL*RPRTSV Trigger: GACGGAAGTTCGAGGACGCCACAGTGCAGTCCGATA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGCACAGCGCGCTTGTTaGGCCCAATGTCCTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDAQRAC*AQCPSC Trigger: ACAAGAAGGACATTGGGCCCAACAAGCGCGCTGTGC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACAGTCGATCTCTATGCTaGCCTGCGTGGACGAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSRSLC*PAWTSS Trigger: TGAGCTCGTCCACGCAGGCCAGCATAGAGATCGACT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACACTCGGAACGGCCAGTaGTTCATATCGGACTGCACT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDTRNGQ*FISDCT Trigger: AGTGCAGTCCGATATGAAGCACTGGCCGTTCCGAGT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGGTCAATGTCGTCTTTaGTCAGCCGACCCTTGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDGQCRL*SADPCR Trigger: ACGACAAGGGTCGGCTGAGCAAAGACGACATTGACC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGCTTGGCGTCGAAGATaGTGTTTGTGGGGTTCATGG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDAWRRR*CLWGSW Trigger: CCATGAACCCCACAAACACCATCTTCGACGCCAAGC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGTTTCTCTTGATGAGTaGGGTCATGACACCGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDVSLDE*GHDTAS Trigger: GCTGGCGGTGTCATGACCCCACTCATCAAGAGAAAC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACAGAGGTTATTGTCCTTaGTCATGGCCCGTTCGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRGYCP*SWPVRP Trigger: AGGGCGAACGGGCCATGACCAAGGACAATAACCTCT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCAGTTGATCACCTCCTaGCACTTGTCGAGGATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDQLITS*HLSRIL Trigger: CAAGATCCTCGACAAGTGTCAGGAGGTGATCAACTG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTTCGGTCAAGCCAGTTaGTCACCTCCTGACACTTGT | + |
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Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDFGQAS*SPPDTC Trigger: ACAAGTGTCAGGAGGTGATCAACTGGCTTGACCGAA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCGAAGATGGTGTTTGTaGGGTTCATGGCCACTTGGT | + |
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Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRRWCL*GSWPLG Trigger: ACCAAGTGGCCATGAACCCCACAAACACCATCTTCG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACACTATCTCCTGGATCTaGCCCTTGTCTAGCTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDTISWI*PLSSLA Trigger: TGCCAAGCTAGACAAGGGCCAGATCCAGGAGATAGT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCTTCCACGGTCTGCTTaGTGTTGTAGGTATAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDLPRSA*CCRYRT Trigger: AGTCCTATACCTACAACATCAAGCAGACCGTGGAAG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCCTTTATATTCCACCTaGACTTTGGGCTTCCCACCT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDPLYST*TLGFPP Trigger: AGGTGGGAAGCCCAAAGTGCAGGTGGAATATAAAGG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCAGTCAGGTCGAACTTaGCCAAGAGGTTATTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDQSGRT*PRGYCP Trigger: AGGACAATAACCTCTTGGGCAAGTTCGACCTGACTG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCTTTCTCTGCCATCTaGTTTCGGTCAAGCCAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSFSAI*FRSSQL Trigger: CAACTGGCTTGACCGAAACCAGATGGCAGAGAAAGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCACGCGATCGCGATTTaGTTCATCTTCCGATTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDHAIAI*FIFRFV Trigger: TACAAATCGGAAGATGAAGCAAATCGCGATCGCGTG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACATCTTGTTTTTGTCCTaGTCGCTAATCTTGCCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDILFLS*SLILPL Trigger: GAGGGGCAAGATTAGCGAGCAGGACAAAAACAAGAT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGTACTCATCTTTCTCTaGCATCTGGTTTCGGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDVLIFL*HLVSVK Trigger: CTTGACCGAAACCAGATGGCAGAGAAAGATGAGTAC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR GCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCTCTCAAGCTCTTTCTaGTTGTGTTCGTACTCATCT | + |
|
Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDLSSSF*LCSYSS Trigger: AGATGAGTACGAACACAAGCAGAAAGAGCTTGAGAG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR TCA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTGTCGTTGGTTATGGTaGTTTTATTTTCTTTACCGG | + |
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Preference number: 4 (lower is better) Translates to: TKLSCCTFPFICMHQAKDCRWLW*FYFLYR Trigger: CCGGTAAAGAAAATAAAATCACCATAACCAACGACA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS GCA 90 bp | GGTCTGCTTGATGTTGTAGGTATAGGACTCCACCGCATTTTTGGCTaGCACGCGATCGCGATTTGCTTCATCTTCCGATTTGTACCGCTC | + |
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Preference number: 5 (lower is better) Translates to: GLLDVVGIGLHRIFG*HAIAICFIFRFVPL Trigger: GAGCGGTACAAATCGGAAGATGAAGCAAATCGCGATCGCGTGGCAGCCAAAAATGCGGTGGAGTCCTATACCTACAACATCAAGCAGACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGGGGTTCATGGCCACTaGGTTCTTGGCGGCGTCGCC | + |
|
Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDGVHGH*VLGGVA Trigger: GGCGACGCCGCCAAGAACCAAGTGGCCATGAACCCC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCGGCGCACAGCGCGCTaGTTGGGCCCAATGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRRTAR*LGPMSF Trigger: GAAGGACATTGGGCCCAACAAGCGCGCTGTGCGCCG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCGGAAGAGATCGGCGTaGAGCTCCTCGAAGCGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRKRSA*SSSKRA Trigger: CGCCCGCTTCGAGGAGCTCAACGCCGATCTCTTCCG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACATGGCCACTTGGTTCTaGGCGGCGTCGCCGATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDMATWF*AASPMR Trigger: TCTCATCGGCGACGCCGCCAAGAACCAAGTGGCCAT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACATGATGCGCAACACGTaGAGGCCGGTGATGGTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDMMRNT*RPVMVP Trigger: GGGCACCATCACCGGCCTCAACGTGTTGCGCATCAT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCGCACAGCGCGCTTGTaGGGCCCAATGTCCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRTARL*GPMSFL Trigger: CAAGAAGGACATTGGGCCCAACAAGCGCGCTGTGCG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTGGCCCTTGTCTAGCTaGGCATCGCGCAGCGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDWPLSS*ASRSAF Trigger: AAAGGCGCTGCGCGATGCCAAGCTAGACAAGGGCCA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTTCGCCCTCGTACACTaGCACCAGCACGCTGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDFALVH*HQHAAL Trigger: CAGAGCAGCGTGCTGGTGCAAGTGTACGAGGGCGAA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCGGTCAATGTCGTCTTaGCTCAGCCGACCCTTGTCG | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRSMSS*LSRPLS Trigger: CGACAAGGGTCGGCTGAGCAAAGACGACATTGACCG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGCTTCATCTTCCGATTaGTACCGCTCCGCCTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDASSSD*YRSASC Trigger: GCAGGAGGCGGAGCGGTACAAATCGGAAGATGAAGC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTATTCCACCTGCACTTaGGGCTTCCCACCTTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDYSTCT*GFPPSL Trigger: GAGCGAAGGTGGGAAGCCCAAAGTGCAGGTGGAATA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGCCGCCTGGACCGCCTaGGTAAAGTTTGCTGATGAT | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDAAWTA*VKFADD Trigger: ATCATCAGCAAACTTTACCAAGGCGGTCCAGGCGGC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCGTCGAAGATGGTGTTaGTGGGGTTCATGGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDRRRWC*WGSWPL Trigger: AAGTGGCCATGAACCCCACAAACACCATCTTCGACG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACGGCCCAATGTCCTTCTaGTGTTTGCGCTTGAACTCC | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDGPMSF*CLRLNS Trigger: GGAGTTCAAGCGCAAACACAAGAAGGACATTGGGCC...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTGCACATTTTCCGACTaGTCGCCGATGAGGATAGCC | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDCTFSD*SPMRIA Trigger: GGCTATCCTCATCGGCGACAAGTCGGAAAATGTGCA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCCAGTCAGGTCGAACTaGCCCAAGAGGTTATTGTCC | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDPVRSN*PKRLLS Trigger: GGACAATAACCTCTTGGGCAAGTTCGACCTGACTGG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCTTTACCGGTGCTCTaGTCGGCAGCAGTGACGTTA | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSLPVL*SAAVTL Trigger: TAACGTCACTGCTGCCGACAAGAGCACCGGTAAAGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCCTGCTCGCTAATCTaGCCCCTCAGTTTCTCGTCT | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSCSLI*PLSFSS Trigger: AGACGAGAAACTGAGGGGCAAGATTAGCGAGCAGGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCCACGCGATCGCGATTaGCTTCATCTTCCGATTTGT | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDPRDRD*LHLPIC Trigger: ACAAATCGGAAGATGAAGCAAATCGCGATCGCGTGG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACATCGTGGTGTTTCTCTaGATGAGTGGGGTCATGACA | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDIVVFL*MSGVMT Trigger: TGTCATGACCCCACTCATCAAGAGAAACACCACGAT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACCACTTGTCGAGGATCTaGTTTTTGTCCTGCTCGCTA | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDHLSRI*FLSCSL Trigger: TAGCGAGCAGGACAAAAACAAGATCCTCGACAAGTG...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCGAGGATCTTGTTTTaGTCCTGCTCGCTAATCTTG | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSRILF*SCSLIL Trigger: CAAGATTAGCGAGCAGGACAAAAACAAGATCCTCGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACAGCCGACCCTTGTCGTaGGTTATGGTGATTTTATTT | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSRPLS*VMVILF Trigger: AAATAAAATCACCATAACCAACGACAAGGGTCGGCT...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS-3UTR CAA 90 bp | ACTAAACTAAGTTGTTGCACCTTTCCTTTCATATGTATGCACCAGGCTAAAGACTCAAGCTCTTTCTGCTaGTGTTCGTACTCATCTTTC | + |
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Preference number: 5 (lower is better) Translates to: TKLSCCTFPFICMHQAKDSSSFC*CSYSSF Trigger: GAAAGATGAGTACGAACACAAGCAGAAAGAGCTTGA...GTCTTTAGCCTGGTGCATACATATGAAAGGAAAGGTGCAACAACTTAGTTTAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS GCA 72 bp | AGCGACAATGGAGTCACGTCGAGTAACAGCAGATCCTaGACATTTTCCGACTTGTCGCCGATGAGGATAGCC | + |
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Preference number: 6 (lower is better) Translates to: SDNGVTSSNSRS*TFSDLSPMRIA Trigger: GGCTATCCTCATCGGCGACAAGTCGGAAAATGTGCAGGATCTGCTGTTACTCGACGTGACTCCATTGTCGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS TCA 72 bp | TCTTGCCCCTCAGTTTCTCGTCTTCCACGGTCTGCTTaGTGTTGTAGGTATAGGACTCCACCGCATTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: SCPSVSRLPRSA*CCRYRTPPHFW Trigger: CCAAAAATGCGGTGGAGTCCTATACCTACAACATCAAGCAGACCGTGGAAGACGAGAAACTGAGGGGCAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS CAA 72 bp | TTGTCGAGGATCTTGTTTTTGTCCTGCTCGCTAATCTaGCCCCTCAGTTTCTCGTCTTCCACGGTCTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LSRILFLSCSLI*PLSFSSSTVCL Trigger: CAAGCAGACCGTGGAAGACGAGAAACTGAGGGGCAAGATTAGCGAGCAGGACAAAAACAAGATCCTCGACAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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| CDS GCA 72 bp | GATGTTGTAGGTATAGGACTCCACCGCATTTTTGGCTaGCACGCGATCGCGATTTGCTTCATCTTCCGATTT | + |
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Preference number: 6 (lower is better) Translates to: DVVGIGLHRIFG*HAIAICFIFRF Trigger: AAATCGGAAGATGAAGCAAATCGCGATCGCGTGGCAGCCAAAAATGCGGTGGAGTCCTATACCTACAACATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080449.7 ENSMUST00000219555.2 |
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