Pregenerated sensors for HSPA1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007033Ensembl transcript IDs: ENSMUST00000007248.5
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GTTCGAGGCTTCTCCATCGGGATCCCAAAGGATGGTGACGTAGGCTaGAGTCCAGTCAGTTCAAGAATCATATTGATGTTTGAAGATGAA | + |
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Preference number: 2 (lower is better) Translates to: VRGFSIGIPKDGDVG*SPVSSRIILMFEDE Trigger: TTCATCTTCAAACATCAATATGATTCTTGAACTGACTGGACTCAAGCCTACGTCACCATCCTTTGGGATCCCGATGGAGAAGCCTCGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| 3UTR-3UTR TCA 90 bp | GAGAAAGGTGGGGTGTGGATAATAAATAACAGACATCCAAATTCTTCAAATGGCGTTCAGGATCATAGATaGGAGGGTGGGGGTGTGAAA | + |
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Preference number: 2 (lower is better) Translates to: EKGGVWIINNRHPNSSNGVQDHR*EGGGVK Trigger: TTTCACACCCCCACCCTCTCATCTATGATCCTGAAC...GCCATTTGAAGAATTTGGATGTCTGTTATTTATTATCCACACCCCACCTTTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR GCA 90 bp | GGCTCAAAGAGGGGCCTGGTTTTCCTAAAGGTCCAGTTCAGGATCATAGATGAGCCAGGTTTGCCTGGGTaGTGGACGACAGCGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: GSKRGLVFLKVQFRIIDEPGLPG*WTTASS Trigger: AGAGGACGCTGTCGTCCAGCACCCAGGCAAACCTGG...CTCATCTATGATCCTGAACTGGACCTTTAGGAAAACCAGGCCCCTCTTTGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR TCA 90 bp | GGCCTGGTTTTCCTAAAGGTCCAGTTCAGGATCATAGATGAGAGGGTGGGGGTGGTTTGCCGGCTTCATTaGTCACTTGAAATGGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: GLVFLKVQFRIIDERVGVVCRLH*SLEMAK Trigger: TTTGGCCATTTCAAGTGATCAATGAAGCCGGCAAAC...CACCCCCACCCTCTCATCTATGATCCTGAACTGGACCTTTAGGAAAACCAGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CCA 90 bp | AAATTCTTCAAATGGCTCAAAGAGGGGCCTGGTTTTCCTAAAGGTCCAGTTCAGGGATTCATGGCCACCTaGTTCTTGGCAGCGTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: KFFKWLKEGPGFPKGPVQGFMAT*FLAASP Trigger: CGGAGACGCTGCCAAGAACCAGGTGGCCATGAATCC...CTGAACTGGACCTTTAGGAAAACCAGGCCCCTCTTTGAGCCATTTGAAGAATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR TCA 90 bp | GGCCTGGTTTTCCTAAAGGTCCAGTTCAGGATCATAGATGAGAGGGTGGGGGTGCCAAAGCTTCATATCTaGCTGCACAACAGGATCATT | + |
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Preference number: 4 (lower is better) Translates to: GLVFLKVQFRIIDERVGVPKLHI*LHNRII Trigger: AATGATCCTGTTGTGCAGTCAGATATGAAGCTTTGG...CACCCCCACCCTCTCATCTATGATCCTGAACTGGACCTTTAGGAAAACCAGGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR GCA 90 bp | GATGGTGACGTAGGCTTGAGTCCAGTCAGTTCAAGAATCATATTGATGTTTGAATCCTGCGATGACACCTaGATCCTTGGTGGCTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: DGDVGLSPVSSRIILMFESCDDT*ILGGLP Trigger: CGGCAAGCCACCAAGGATGCAGGTGTCATCGCAGGA...TTCAAACATCAATATGATTCTTGAACTGACTGGACTCAAGCCTACGTCACCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR TCA 90 bp | AAATTCTTCAAATGGCTCAAAGAGGGGCCTGGTTTTCCTAAAGGTCCAGTTCAGCGTCAGTACCATGGATaGGATCTCCTCTGGGTAGAA | + |
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Preference number: 4 (lower is better) Translates to: KFFKWLKEGPGFPKGPVQRQYHG*DLLWVE Trigger: TTCTACCCAGAGGAGATCTCATCCATGGTACTGACG...CTGAACTGGACCTTTAGGAAAACCAGGCCCCTCTTTGAGCCATTTGAAGAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CCA 90 bp | AAATTCTTCAAATGGCTCAAAGAGGGGCCTGGTTTTCCTAAAGGTCCAGTTCAGCCGGTGCATCCGCTCTaGTACAGTTTTGTGATGATC | + |
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Preference number: 4 (lower is better) Translates to: KFFKWLKEGPGFPKGPVQPVHPL*YSFVMI Trigger: GATCATCACAAAACTGTACCAGAGCGGATGCACCGG...CTGAACTGGACCTTTAGGAAAACCAGGCCCCTCTTTGAGCCATTTGAAGAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR GCA 90 bp | GAGAAAGGTGGGGTGTGGATAATAAATAACAGACATCCAAATTCTTCAAATGGCCAGCACATTGAGTCCTaGGATGACACCTGCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: EKGGVWIINNRHPNSSNGQHIES*DDTCIL Trigger: AAGGATGCAGGTGTCATCGCAGGACTCAATGTGCTG...GCCATTTGAAGAATTTGGATGTCTGTTATTTATTATCCACACCCCACCTTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CCA 90 bp | GATGGTGACGTAGGCTTGAGTCCAGTCAGTTCAAGAATCATATTGATGTTTGAATCAAAAACAGTGTTCTaGGGATTCATGGCCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: DGDVGLSPVSSRIILMFESKTVF*GFMATW Trigger: CCAGGTGGCCATGAATCCCCAGAACACTGTTTTTGA...TTCAAACATCAATATGATTCTTGAACTGACTGGACTCAAGCCTACGTCACCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CCA 90 bp | GGCTCAAAGAGGGGCCTGGTTTTCCTAAAGGTCCAGTTCAGGATCATAGATGAGACTAGAACAATGTCATaGATTTTAGCCTTATCCATC | + |
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Preference number: 4 (lower is better) Translates to: GSKRGLVFLKVQFRIIDETRTMS*ILALSI Trigger: GATGGATAAGGCTAAAATCCATGACATTGTTCTAGT...CTCATCTATGATCCTGAACTGGACCTTTAGGAAAACCAGGCCCCTCTTTGAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CCA 90 bp | GATGGTGACGTAGGCTTGAGTCCAGTCAGTTCAAGAATCATATTGATGTTTGAAATTCTAAGGCATTTTTaGCAGCGATTTTCTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: DGDVGLSPVSSRIILMFEILRHF*QRFSPS Trigger: AGAGGGAGAAAATCGCTGCCAAAAATGCCTTAGAAT...TTCAAACATCAATATGATTCTTGAACTGACTGGACTCAAGCCTACGTCACCATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR GCA 90 bp | GATGGTGACGTAGGCTTGAGTCCAGTCAGTTCAAGAATCATATTGATGTTTGAAAGGAAAGGACCTCATTaGATTTATCCAGTATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: DGDVGLSPVSSRIILMFERKGPH*IYPVFS Trigger: AGAAAATACTGGATAAATGCAATGAGGTCCTTTCCT...TTCAAACATCAATATGATTCTTGAACTGACTGGACTCAAGCCTACGTCACCATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS CCA 90 bp | TTCCTCGATGGTAGGGCCTGTGGCAGCCCTGCCGGGAGTATACCCTaGCGTACAGGTGGGCCCGGTGCATCCGCTCTGGTACAGTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: FLDGRACGSPAGSIP*RTGGPGASALVQFC Trigger: ACAAAACTGTACCAGAGCGGATGCACCGGGCCCACCTGTACGCCAGGGTATACTCCCGGCAGGGCTGCCACAGGCCCTACCATCGAGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CAA 90 bp | AAATTCTTCAAATGGCTCAAAGAGGGGCCTGGTTTTCCTAAAGGTCCAGTTCAGCGCTCAATCTCCTCCTaGCTCAGGCGACCCTTGTCG | + |
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Preference number: 5 (lower is better) Translates to: KFFKWLKEGPGFPKGPVQRSISS*LRRPLS Trigger: CGACAAGGGTCGCCTGAGCAAGGAGGAGATTGAGCG...CTGAACTGGACCTTTAGGAAAACCAGGCCCCTCTTTGAGCCATTTGAAGAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CAA 90 bp | GGCCTGGTTTTCCTAAAGGTCCAGTTCAGGATCATAGATGAGAGGGTGGGGGTGTTAGCCTTATCCATCTaGGCATCCCGAAGAGACTTT | + |
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Preference number: 5 (lower is better) Translates to: GLVFLKVQFRIIDERVGVLALSI*ASRRDF Trigger: AAAGTCTCTTCGGGATGCCAAGATGGATAAGGCTAA...CACCCCCACCCTCTCATCTATGATCCTGAACTGGACCTTTAGGAAAACCAGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CAA 90 bp | GGCCTGGTTTTCCTAAAGGTCCAGTTCAGGATCATAGATGAGAGGGTGGGGGTGGGCTTCATTGATCACTaGAAATGGCCAAAGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: GLVFLKVQFRIIDERVGVGFIDH*KWPKLH Trigger: ATGAAGCTTTGGCCATTTCAAGTGATCAATGAAGCC...CACCCCCACCCTCTCATCTATGATCCTGAACTGGACCTTTAGGAAAACCAGGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CAA 90 bp | AAATTCTTCAAATGGCTCAAAGAGGGGCCTGGTTTTCCTAAAGGTCCAGTTCAGACTGCCTCATCGGGATaGATACTCTTGTTGAGATCC | + |
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Preference number: 5 (lower is better) Translates to: KFFKWLKEGPGFPKGPVQTASSG*ILLLRS Trigger: GGATCTCAACAAGAGTATCAATCCCGATGAGGCAGT...CTGAACTGGACCTTTAGGAAAACCAGGCCCCTCTTTGAGCCATTTGAAGAATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CAA 90 bp | GATGGTGACGTAGGCTTGAGTCCAGTCAGTTCAAGAATCATATTGATGTTTGAAGATTCTAAGGCATTTTaGGCAGCGATTTTCTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: DGDVGLSPVSSRIILMFEDSKAF*AAIFSL Trigger: GAGGGAGAAAATCGCTGCCAAAAATGCCTTAGAATC...TTCAAACATCAATATGATTCTTGAACTGACTGGACTCAAGCCTACGTCACCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS-3UTR CAA 90 bp | GATGGTGACGTAGGCTTGAGTCCAGTCAGTTCAAGAATCATATTGATGTTTGAACAGGAAAGGACCTCATaGCATTTATCCAGTATTTTC | + |
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Preference number: 5 (lower is better) Translates to: DGDVGLSPVSSRIILMFEQERTS*HLSSIF Trigger: GAAAATACTGGATAAATGCAATGAGGTCCTTTCCTG...TTCAAACATCAATATGATTCTTGAACTGACTGGACTCAAGCCTACGTCACCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS CCA 72 bp | GGTAGGGCCTGTGGCAGCCCTGCCGGGAGTATACCCTaGCGTACAGGTGGGCCCGGTGCATCCGCTCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: GRACGSPAGSIP*RTGGPGASALV Trigger: TACCAGAGCGGATGCACCGGGCCCACCTGTACGCCAGGGTATACTCCCGGCAGGGCTGCCACAGGCCCTACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS CCA 72 bp | TACCCTGGCGTACAGGTGGGCCCGGTGCATCCGCTCTaGTACAGTTTTGTGATGATCGGATTACACATATTT | + |
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Preference number: 6 (lower is better) Translates to: YPGVQVGPVHPL*YSFVMIGLHIF Trigger: AAATATGTGTAATCCGATCATCACAAAACTGTACCAGAGCGGATGCACCGGGCCCACCTGTACGCCAGGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS CAA 72 bp | CTCTTCATATTAAAGGCGTACGATTCTAAGGCATTTTaGGCAGCGATTTTCTCCCTCTGGCCCTCATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LFILKAYDSKAF*AAIFSLWPSSS Trigger: GGAGGATGAGGGCCAGAGGGAGAAAATCGCTGCCAAAAATGCCTTAGAATCGTACGCCTTTAATATGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS TCA 72 bp | ACCATCACCTTGGGTTTGCCGGCTTCATTGATCACTTaGAATGGCCAAAGCTTCATATCTGACTGCACAACA | + |
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Preference number: 6 (lower is better) Translates to: TITLGLPASLIT*NGQSFISDCTT Trigger: TGTTGTGCAGTCAGATATGAAGCTTTGGCCATTTCAAGTGATCAATGAAGCCGGCAAACCCAAGGTGATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS TCA 72 bp | TGCATTTATCCAGTATTTTCTTTTTATCGGACTCGCTaGTCTTGTCCTTCAGACCCTCATCACCCACAGCGC | + |
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Preference number: 6 (lower is better) Translates to: CIYPVFSFYRTR*SCPSDPHHPQR Trigger: GCGCTGTGGGTGATGAGGGTCTGAAGGACAAGATCAGCGAGTCCGATAAAAAGAAAATACTGGATAAATGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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| CDS TCA 72 bp | TATAGGACACCATCACCTTGGGTTTGCCGGCTTCATTaGTCACTTGAAATGGCCAAAGCTTCATATCTGACT | + |
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Preference number: 6 (lower is better) Translates to: YRTPSPWVCRLH*SLEMAKASYLT Trigger: AGTCAGATATGAAGCTTTGGCCATTTCAAGTGATCAATGAAGCCGGCAAACCCAAGGTGATGGTGTCCTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007248.5 |
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