Pregenerated sensors for HSPA1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090877

Ensembl transcript IDs: ENSMUST00000172753.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	AAATGTACACAGGGTGGCAGTGTAGACATGTATGCAGGAAGGATACACCATCTTCCATCTCCAGGGAACTaGGCAGCTAGACTATATGTC	+
Preference number: 2 (lower is better) Translates to: KCTQGGSVDMYAGRIHHLPSPGN*AARLYV Trigger: GACATATAGTCTAGCTGCCCAGTTCCCTGGAGATGG...AAGATGGTGTATCCTTCCTGCATACATGTCTACACTGCCACCCTGTGTACATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172753.2
3UTR-3UTR GCA 90 bp	AAATGTACACAGGGTGGCAGTGTAGACATGTATGCAGGAAGGATACACCATCTTTTATGTAGTACACAGTaGCAAGACGTTTGTTTAAGA	+
Preference number: 2 (lower is better) Translates to: KCTQGGSVDMYAGRIHHLLCSTQ*QDVCLR Trigger: TCTTAAACAAACGTCTTGGCACTGTGTACTACATAA...AAGATGGTGTATCCTTCCTGCATACATGTCTACACTGCCACCCTGTGTACATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172753.2
CDS-3UTR CCA 90 bp	TGTCTTAGAGATGACCATCTCCAGGGAACTGGGCAGCTAGACTATATGTCTTCCCCACCTCCTCGATGGTaGGTCCTGAGCCAGAGGCTC	+
Preference number: 4 (lower is better) Translates to: CLRDDHLQGTGQLDYMSSPPPRW*VLSQRL Trigger: GAGCCTCTGGCTCAGGACCCACCATCGAGGAGGTGG...GGAAGACATATAGTCTAGCTGCCCAGTTCCCTGGAGATGGTCATCTCTAAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172753.2

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