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Pregenerated sensors for HSPA1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091971

Ensembl transcript IDs: ENSMUST00000087328.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCAAGTTCACCAACCTGGAAACAAGTCCTACAGTGCAACCACCATaGAAGATTATAAACGCAAGGAGAAGCAGCAGAGTCTCCGCTGTC +
Preference number: 1 (lower is better)
Translates to: SKFTNLETSPTVQPP*KIINARRSSRVSAV
Trigger: GACAGCGGAGACTCTGCTGCTTCTCCTTGCGTTTATAATCTTGCATGGTGGTTGCACTGTAGGACTTGTTTCCAGGTTGGTGAACTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
3UTR-3UTR TCA 90 bp CCAGCCCTGGCCTCTGAAGGACCCGACACAAGCATGTATCAACAATGTGGCCCATCAGCGGGGCAGTGCTaGATTGAAGAATATATATAC +
Preference number: 2 (lower is better)
Translates to: PALASEGPDTSMYQQCGPSAGQC*IEEYIY
Trigger: GTATATATATTCTTCAATTCAGCACTGCCCCGCTGA...TGGGCCACATTGTTGATACATGCTTGTGTCGGGTCCTTCAGAGGCCAGGGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
3UTR GCA 72 bp ACCAACCTGGAAACAAGTCCTACAGTGCAACCACCATaGAAGATTATAAACGCAAGGAGAAGCAGCAGAGTC +
Preference number: 3 (lower is better)
Translates to: TNLETSPTVQPP*KIINARRSSRV
Trigger: GACTCTGCTGCTTCTCCTTGCGTTTATAATCTTGCATGGTGGTTGCACTGTAGGACTTGTTTCCAGGTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
3UTR GCA 72 bp TCACACAAGCAGATCACAATGCAATGTCCCTGTGAGTaGTCCACACCCGTGTCTGTGTCTTCAGATAAAATG +
Preference number: 3 (lower is better)
Translates to: SHKQITMQCPCE*STPVSVSSDKM
Trigger: CATTTTATCTGAAGACACAGACACGGGTGTGGAGCACTCACAGGGACATTGCATTGTGATCTGCTTGTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
3UTR TCA 72 bp AAAATTGACCCGAGTTCAGGATGGTTGTGTAAAAACTaGACACATGCTGGTGCTGTCACTTCACCTCCAAGT +
Preference number: 3 (lower is better)
Translates to: KIDPSSGWLCKN*THAGAVTSPPS
Trigger: ACTTGGAGGTGAAGTGACAGCACCAGCATGTGTTCAGTTTTTACACAACCATCCTGAACTCGGGTCAATTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
3UTR-3UTR CAA 90 bp ACACCCGTGTCTGTGTCTTCAGATAAAATGTTAGTCAAGCGTAGCCGAAACTGTCGGGGCAGTGCTGAATaGAAGAATATATATACTTAT +
Preference number: 3 (lower is better)
Translates to: TPVSVSSDKMLVKRSRNCRGSAE*KNIYTY
Trigger: ATAAGTATATATATTCTTCAATTCAGCACTGCCCCG...ACAGTTTCGGCTACGCTTGACTAACATTTTATCTGAAGACACAGACACGGGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
3UTR TCA 72 bp ACTGAAAGACAGTTTAGTTTCCCTAAGTCTAGGACTTaGTTGCAGGACAAACTAAGGAGTGAAGTACTAAAC +
Preference number: 3 (lower is better)
Translates to: TERQFSFPKSRT*LQDKLRSEVLN
Trigger: GTTTAGTACTTCACTCCTTAGTTTGTCCTGCAATCAAGTCCTAGACTTAGGGAAACTAAACTGTCTTTCAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
CDS-3UTR CAA 90 bp CCGCTGTCAGTAATCCAGCCCTGGCCTCTGAAGGACCCGACACAAGCATGTATCGAGCCAGAGGCTCCCTaGGGCGCCTGGGCCCCGAAG +
Preference number: 5 (lower is better)
Translates to: PLSVIQPWPLKDPTQACIEPEAP*GAWAPK
Trigger: CTTCGGGGCCCAGGCGCCCAAGGGAGCCTCTGGCTC...GATACATGCTTGTGTCGGGTCCTTCAGAGGCCAGGGCTGGATTACTGACAGCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
CDS-3UTR CAA 90 bp ACAAGCAGATCACAATGCAATGTCCCTGTGAGTGCTCCACACCCGTGTCTGTGTTTGTCGGCCAGCGTGTaGGAGTCCAGCCAGGAGATG +
Preference number: 5 (lower is better)
Translates to: TSRSQCNVPVSAPHPCLCLSASV*ESSQEM
Trigger: CATCTCCTGGCTGGACTCCAACACGCTGGCCGACAA...ACACAGACACGGGTGTGGAGCACTCACAGGGACATTGCATTGTGATCTGCTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4
CDS-3UTR CAA 90 bp CCCTGTGAGTGCTCCACACCCGTGTCTGTGTCTTCAGATAAAATGTTAGTCAAGTCCAGCACCTTCTTCTaGTCAGCCTCGCTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: PCECSTPVSVSSDKMLVKSSTFF*SASLSL
Trigger: CAAGCTCAGCGAGGCTGACAAGAAGAAGGTGCTGGA...CTTGACTAACATTTTATCTGAAGACACAGACACGGGTGTGGAGCACTCACAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087328.4