Pregenerated sensors for HSP90AB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023944Ensembl transcript IDs: ENSMUST00000024739.14
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCAACCCTGCTATTCTGTGGGAGGGGATCTTCCTGCCTTAAGGCACAGGACAGGCAGGTGGGTCAGGGCTaGTGGGGGAGCCACGGGGAT | + |
|
Preference number: 2 (lower is better) Translates to: PTLLFCGRGSSCLKAQDRQVGQG*WGSHGD Trigger: ATCCCCGTGGCTCCCCCAGCAGCCCTGACCCACCTG...CCTGTCCTGTGCCTTAAGGCAGGAAGATCCCCTCCCACAGAATAGCAGGGTTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| 3UTR-3UTR CCA 90 bp | CATAACACCCAACCCTGCTATTCTGTGGGAGGGGATCTTCCTGCCTTAAGGCACGTGGGTCAGGGCTGCTaGGGGAGCCACGGGGATACT | + |
|
Preference number: 2 (lower is better) Translates to: HNTQPCYSVGGDLPALRHVGQGC*GSHGDT Trigger: AGTATCCCCGTGGCTCCCCCAGCAGCCCTGACCCAC...GTGCCTTAAGGCAGGAAGATCCCCTCCCACAGAATAGCAGGGTTGGGTGTTATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| 3UTR GCA 72 bp | CACCCAACCCTGCTATTCTGTGGGAGGGGATCTTCCTaGCTTAAGGCACAGGACAGGATAGAAGATTCTTGT | + |
|
Preference number: 3 (lower is better) Translates to: HPTLLFCGRGSS*LKAQDRIEDSC Trigger: ACAAGAATCTTCTATCCTGTCCTGTGCCTTAAGGCAGGAAGATCCCCTCCCACAGAATAGCAGGGTTGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR TCA 90 bp | AAGGCACAGGACAGGATAGAAGATTCTTGTAGACATGAGCAGAGAGCCAGGTGGCCTGGAGAGCCTCCATaGACGCCTTCGTGCCAGACT | + |
|
Preference number: 4 (lower is better) Translates to: KAQDRIEDSCRHEQRARWPGEPP*TPSCQT Trigger: AGTCTGGCACGAAGGCGTTCATGGAGGCTCTCCAGG...CCACCTGGCTCTCTGCTCATGTCTACAAGAATCTTCTATCCTGTCCTGTGCCTT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR GCA 90 bp | CATAACACCCAACCCTGCTATTCTGTGGGAGGGGATCTTCCTGCCTTAAGGCACAGAGTTGTCTCGCAGTaGCTGGGCCTTCATGATCCG | + |
|
Preference number: 4 (lower is better) Translates to: HNTQPCYSVGGDLPALRHRVVSQ*LGLHDP Trigger: CGGATCATGAAGGCCCAGGCACTGCGAGACAACTCT...GTGCCTTAAGGCAGGAAGATCCCCTCCCACAGAATAGCAGGGTTGGGTGTTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR GCA 90 bp | CAGGACAGGATAGAAGATTCTTGTAGACATGAGCAGAGAGCCAGGTGGGTCAGGAGGATCTTGCTCTGCTaGAGCATCTCCCGGGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: QDRIEDSCRHEQRARWVRRILLC*SISREM Trigger: CATCTCCCGGGAGATGCTGCAGCAGAGCAAGATCCT...CCTGACCCACCTGGCTCTCTGCTCATGTCTACAAGAATCTTCTATCCTGTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR GCA 90 bp | CAGGACAGGATAGAAGATTCTTGTAGACATGAGCAGAGAGCCAGGTGGGTCAGGAGCACTGGGCTCCTCTaGAGTGACCTCATCTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: QDRIEDSCRHEQRARWVRSTGLL*SDLIFI Trigger: GATGAAGATGAGGTCACTGCAGAGGAGCCCAGTGCT...CCTGACCCACCTGGCTCTCTGCTCATGTCTACAAGAATCTTCTATCCTGTCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR CCA 90 bp | TCCTGCCTTAAGGCACAGGACAGGATAGAAGATTCTTGTAGACATGAGCAGAGATGCGGTAGATGCGGTTaGAGTGGGTTTGGGGATCCT | + |
|
Preference number: 4 (lower is better) Translates to: SCLKAQDRIEDSCRHEQRCGRCG*SGFGDP Trigger: AGGATCCCCAAACCCACTCCAACCGCATCTACCGCA...TCTCTGCTCATGTCTACAAGAATCTTCTATCCTGTCCTGTGCCTTAAGGCAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR CCA 90 bp | CATAACACCCAACCCTGCTATTCTGTGGGAGGGGATCTTCCTGCCTTAAGGCACTTGTTCAGCTCCTCCTaGTCAATGTACTTCTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: HNTQPCYSVGGDLPALRHLFSSS*SMYFSL Trigger: CAAAGAGAAGTACATTGACCAGGAGGAGCTGAACAA...GTGCCTTAAGGCAGGAAGATCCCCTCCCACAGAATAGCAGGGTTGGGTGTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR TCA 90 bp | ACAATACATAACACCCAACCCTGCTATTCTGTGGGAGGGGATCTTCCTGCCTTACCAAGATCTCCTTCATaGGCTTGCAGAGATTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: TIHNTQPCYSVGGDLPALPRSPS*ACRDSQ Trigger: TTGAGAATCTCTGCAAGCTCATGAAGGAGATCTTGG...TAAGGCAGGAAGATCCCCTCCCACAGAATAGCAGGGTTGGGTGTTATGTATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR GCA 90 bp | ACAATACATAACACCCAACCCTGCTATTCTGTGGGAGGGGATCTTCCTGCCTTATCTTTTTCTTGTCTTTaGCGCTGTCATCTTCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: TIHNTQPCYSVGGDLPALSFSCL*RCHLPH Trigger: ATGAGGAAGATGACAGCGGCAAAGACAAGAAAAAGA...TAAGGCAGGAAGATCCCCTCCCACAGAATAGCAGGGTTGGGTGTTATGTATTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR CAA 90 bp | CAGGACAGGATAGAAGATTCTTGTAGACATGAGCAGAGAGCCAGGTGGGTCAGGATGACCTTCAGGATCTaGCTCTGCTGCAGCATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: QDRIEDSCRHEQRARWVRMTFRI*LCCSIS Trigger: GGAGATGCTGCAGCAGAGCAAGATCCTGAAGGTCAT...CCTGACCCACCTGGCTCTCTGCTCATGTCTACAAGAATCTTCTATCCTGTCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||
| CDS-3UTR CAA 90 bp | CAGGACAGGATAGAAGATTCTTGTAGACATGAGCAGAGAGCCAGGTGGGTCAGGCTCTCATATCGAATCTaGTCCAGGGCATCTGAAGCA | + |
|
Preference number: 5 (lower is better) Translates to: QDRIEDSCRHEQRARWVRLSYRI*SRASEA Trigger: TGCTTCAGATGCCCTGGACAAGATTCGATATGAGAG...CCTGACCCACCTGGCTCTCTGCTCATGTCTACAAGAATCTTCTATCCTGTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024739.14 |
||