Pregenerated sensors for HSP90AA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021270Ensembl transcript IDs: ENSMUST00000021698.13, ENSMUST00000094361.11, ENSMUST00000124156.8, ENSMUST00000149189.2, ENSMUST00000155242.8
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGAACTCAGGCTGGCCTCAAACTACCCAGCCAAGTCTTCAAACATaGCTTTATCTAAGAGGTGCTAGGACAAAATCCCAGAACCCCACA | + |
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Preference number: 1 (lower is better) Translates to: WNSGWPQTTQPSLQT*LYLRGARTKSQNPT Trigger: TGTGGGGTTCTGGGATTTTGTCCTAGCACCTCTTAGATAAAGGCATGTTTGAAGACTTGGCTGGGTAGTTTGAGGCCAGCCTGAGTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| 3UTR CCA 90 bp | ATTTTTCCTTATAGCCTCCAAGACAGGATTTCATGGAACTCAGGCTaGCCTCAAACTACCCAGCCAAGTCTTCAAACATGCCTTTATCTA | + |
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Preference number: 1 (lower is better) Translates to: IFPYSLQDRISWNSG*PQTTQPSLQTCLYL Trigger: TAGATAAAGGCATGTTTGAAGACTTGGCTGGGTAGTTTGAGGCCAGCCTGAGTTCCATGAAATCCTGTCTTGGAGGCTATAAGGAAAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| 3UTR CAA 90 bp | CCATTCACAAGCCTTGCTGAGTTACAAGACCTAGGAAACTTAGGGTaGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: PFTSLAELQDLGNLG*FSGLWKTSHLGNSC Trigger: ACAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAAGTTTCCTAGGTCTTGTAACTCAGCAAGGCTTGTGAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGTGTGTGTGGGGGTGCGCAAAGAAAAGACACATTCCACACTTCTTTTTGGAAAACAAGCCACTTaGGGAATTCCTGTCAGGTTG | + |
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Preference number: 2 (lower is better) Translates to: VCVCVGVRKEKTHSTLLFGKQAT*GIPVRL Trigger: CAACCTGACAGGAATTCCCCAAGTGGCTTGTTTTCC...AAAAAGAAGTGTGGAATGTGTCTTTTCTTTGCGCACCCCCACACACACACACAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| 3UTR-3UTR GCA 90 bp | CCTGCCCCCTATAGTAAATACCCACTATTTTTCCTTATAGCCTCCAAGACAGGACCAAGTCTTCAAACATaGCTTTATCTAAGAGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: PAPYSKYPLFFLIASKTGPSLQT*LYLRGA Trigger: AGCACCTCTTAGATAAAGGCATGTTTGAAGACTTGG...TCCTGTCTTGGAGGCTATAAGGAAAAATAGTGGGTATTTACTATAGGGGGCAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| 3UTR GCA 72 bp | GGCTGGCCTCAAACTACCCAGCCAAGTCTTCAAACATaGCTTTATCTAAGAGGTGCTAGGACAAAATCCCAG | + |
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Preference number: 3 (lower is better) Translates to: GWPQTTQPSLQT*LYLRGARTKSQ Trigger: CTGGGATTTTGTCCTAGCACCTCTTAGATAAAGGCATGTTTGAAGACTTGGCTGGGTAGTTTGAGGCCAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| 3UTR-3UTR CAA 90 bp | TCCACATATAGGACACACAAGATTAAGTCTCTGGACCAGTGTAATTTTTATGGAGTTGTTCTCGGGACTTaGGAAAACAAGCCACTTGGG | + |
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Preference number: 3 (lower is better) Translates to: STYRTHKIKSLDQCNFYGVVLGT*ENKPLG Trigger: CCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAAC...TCCATAAAAATTACACTGGTCCAGAGACTTAATCTTGTGTGTCCTATATGTGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| 3UTR CCA 72 bp | GGATGTCCACATATAGGACACACAAGATTAAGTCTCTaGACCAGTGTAATTTTTATGGATCAAATGTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: GCPHIGHTRLSL*TSVIFMDQMCV Trigger: CACACACATTTGATCCATAAAAATTACACTGGTCCAGAGACTTAATCTTGTGTGTCCTATATGTGGACATCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| CDS-3UTR TCA 90 bp | TTAGGGTTGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGTCAGCCTGCAAAGCCTCCATaGAGGCTTTGGTGCCCGACT | + |
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Preference number: 4 (lower is better) Translates to: LGLFSGLWKTSHLGNSCQPAKPP*RLWCPT Trigger: AGTCGGGCACCAAAGCCTTCATGGAGGCTTTGCAGG...CTGACAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| CDS-3UTR CCA 90 bp | TTAGGGTTGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGTCAGAAAAGGAGCGCGTCTTaGGACAAAAAGAAGGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LGLFSGLWKTSHLGNSCQKRSAS*DKKKGP Trigger: CGGGCCCTTCTTTTTGTCCCAAGACGCGCTCCTTTT...CTGACAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| CDS-3UTR CCA 90 bp | GTGTGTGTGTGTGTGGGGGTGCGCAAAGAAAAGACACATTCCACACTTCTTTTTAAAAGGAGCGCGTCTTaGGACAAAAAGAAGGGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: VCVCVGVRKEKTHSTLLFKRSAS*DKKKGP Trigger: CGGGCCCTTCTTTTTGTCCCAAGACGCGCTCCTTTT...AAAAAGAAGTGTGGAATGTGTCTTTTCTTTGCGCACCCCCACACACACACACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| CDS-3UTR TCA 90 bp | TCCACATATAGGACACACAAGATTAAGTCTCTGGACCAGTGTAATTTTTATGGACCTGCAAAGCCTCCATaGAGGCTTTGGTGCCCGACT | + |
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Preference number: 4 (lower is better) Translates to: STYRTHKIKSLDQCNFYGPAKPP*RLWCPT Trigger: AGTCGGGCACCAAAGCCTTCATGGAGGCTTTGCAGG...TCCATAAAAATTACACTGGTCCAGAGACTTAATCTTGTGTGTCCTATATGTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | CTCCTTATGGCCCTGGCTGGCCTAGAACTCAGAAATCCGCCTGCCGGGATTAAAAGGGTTCGGTCCTGTTaGCTGGGAATGAGATTGATG | + |
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Preference number: 5 (lower is better) Translates to: LLMALAGLELRNPPAGIKRVRSC*LGMRLM Trigger: CATCAATCTCATTCCCAGCAAACAGGACCGAACCCT...TTTAATCCCGGCAGGCGGATTTCTGAGTTCTAGGCCAGCCAGGGCCATAAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | AAACTTAGGGTTGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGCAAAAGGAGCGCGTCTaGGGACAAAAAGAAGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: KLRVVLGTLENKPLGEFLQKERV*GQKEGP Trigger: GGGCCCTTCTTTTTGTCCCAAGACGCGCTCCTTTTG...CAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAAGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | AAACTTAGGGTTGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGTTGCTGGGAATGAGATaGATGTGCAGCTCCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: KLRVVLGTLENKPLGEFLLLGMR*MCSSFP Trigger: GGGGAAGGAGCTGCACATCAATCTCATTCCCAGCAA...CAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGGGGGTGCGCAAAGAAAAGACACATTCCACACTTCTTTTTTTGCTGGGAATGAGATaGATGTGCAGCTCCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: VCVCVGVRKEKTHSTLLFLLGMR*MCSSFP Trigger: GGGGAAGGAGCTGCACATCAATCTCATTCCCAGCAA...AAAAAGAAGTGTGGAATGTGTCTTTTCTTTGCGCACCCCCACACACACACACAC 49% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | AAACTTAGGGTTGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGAGGGTTCGGTCCTGTTaGCTGGGAATGAGATTGATG | + |
|
Preference number: 5 (lower is better) Translates to: KLRVVLGTLENKPLGEFLRVRSC*LGMRLM Trigger: CATCAATCTCATTCCCAGCAAACAGGACCGAACCCT...CAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAAGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | AAACTTAGGGTTGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGCAGAATTTTACTTTGTaGCAGCATTTCACGGGAAAT | + |
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Preference number: 5 (lower is better) Translates to: KLRVVLGTLENKPLGEFLQNFTL*QHFTGN Trigger: ATTTCCCGTGAAATGCTGCAACAAAGTAAAATTCTG...CAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | AAACTTAGGGTTGTTCTCGGGACTTTGGAAAACAAGCCACTTGGGGAATTCCTGTTTCAGAATTTTACTTaGTTGCAGCATTTCACGGGA | + |
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Preference number: 5 (lower is better) Translates to: KLRVVLGTLENKPLGEFLFQNFT*LQHFTG Trigger: TCCCGTGAAATGCTGCAACAAAGTAAAATTCTGAAA...CAGGAATTCCCCAAGTGGCTTGTTTTCCAAAGTCCCGAGAACAACCCTAAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | TGTCCACATATAGGACACACAAGATTAAGTCTCTGGACCAGTGTAATTTTTATGCAGAATTTTACTTTGTaGCAGCATTTCACGGGAAAT | + |
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Preference number: 5 (lower is better) Translates to: CPHIGHTRLSLWTSVIFMQNFTL*QHFTGN Trigger: ATTTCCCGTGAAATGCTGCAACAAAGTAAAATTCTG...CATAAAAATTACACTGGTCCAGAGACTTAATCTTGTGTGTCCTATATGTGGACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| CDS-3UTR CAA 90 bp | ACATATAGGACACACAAGATTAAGTCTCTGGACCAGTGTAATTTTTATGGATCATTTCAGAATTTTACTTaGTTGCAGCATTTCACGGGA | + |
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Preference number: 5 (lower is better) Translates to: TYRTHKIKSLDQCNFYGSFQNFT*LQHFTG Trigger: TCCCGTGAAATGCTGCAACAAAGTAAAATTCTGAAA...TGATCCATAAAAATTACACTGGTCCAGAGACTTAATCTTGTGTGTCCTATATGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094361.11 |
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| CDS GCA 72 bp | AGGGTTCGGTCCTGTTTGCTGGGAATGAGATTGATGTaGAGCTCCTTCCCCGAGTCCAGTTTACTGGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: RVRSCLLGMRLM*SSFPESSLLGS Trigger: GGACCCCAGTAAACTGGACTCGGGGAAGGAGCTGCACATCAATCTCATTCCCAGCAAACAGGACCGAACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 ENSMUST00000124156.8 ENSMUST00000149189.2 ENSMUST00000155242.8 |
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| CDS CAA 72 bp | ATGGTCAGGGTTCGGTCCTGTTTGCTGGGAATGAGATaGATGTGCAGCTCCTTCCCCGAGTCCAGTTTACTG | + |
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Preference number: 6 (lower is better) Translates to: MVRVRSCLLGMR*MCSSFPESSLL Trigger: CAGTAAACTGGACTCGGGGAAGGAGCTGCACATCAATCTCATTCCCAGCAAACAGGACCGAACCCTGACCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000021698.13 ENSMUST00000094361.11 ENSMUST00000124156.8 ENSMUST00000149189.2 ENSMUST00000155242.8 |
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