Pregenerated sensors for HSFY2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045336Ensembl transcript IDs: ENSMUST00000062085.6
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGGTCTTCATCTGGCTCTaGGGCACAGAGGGTATGCGG | + |
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Preference number: 4 (lower is better) Translates to: VHIEFYCSITIISGTLQVVFIWL*GTEGMR Trigger: CCGCATACCCTCTGTGCCTCAGAGCCAGATGAAGAC...CACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR GCA 90 bp | ATTCTAATCTCTGCTATGATGAATGTCTTCCTAAAGAACCAAGTAGATTGTTGGGAGGCACAGAGGGTATaGGGTGGCCTCTTTATCAAG | + |
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Preference number: 4 (lower is better) Translates to: ILISAMMNVFLKNQVDCWEAQRV*GGLFIK Trigger: CTTGATAAAGAGGCCACCGCATACCCTCTGTGCCTC...CCAACAATCTACTTGGTTCTTTAGGAAGACATTCATCATAGCAGAGATTAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR TCA 90 bp | CAGGTGTTTGTCAACATGAATTCTAATCTCTGCTATGATGAATGTCTTCCTAAACAACTATTCCACAAGTaGGACATGTCCCCGCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: QVFVNMNSNLCYDECLPKQLFHK*DMSPRF Trigger: AAACCGCGGGGACATGTCTCACTTGTGGAATAGTTG...TTTAGGAAGACATTCATCATAGCAGAGATTAGAATTCATGTTGACAAACACCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR TCA 90 bp | ATTCTAATCTCTGCTATGATGAATGTCTTCCTAAAGAACCAAGTAGATTGTTGGAAGTCTGAGTCCTTCTaGCCTGTGTTGTCACACCAA | + |
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Preference number: 4 (lower is better) Translates to: ILISAMMNVFLKNQVDCWKSESF*PVLSHQ Trigger: TTGGTGTGACAACACAGGTCAGAAGGACTCAGACTT...CCAACAATCTACTTGGTTCTTTAGGAAGACATTCATCATAGCAGAGATTAGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR GCA 90 bp | GTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGCACAGTGCTGTCGTTTaGTTGAGTGAAGATTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VHIEFYCSITIISGTLQVHSAVV*LSEDSL Trigger: CAGAGAATCTTCACTCAAGCAAACGACAGCACTGTG...CACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CCA 90 bp | ATTCTAATCTCTGCTATGATGAATGTCTTCCTAAAGAACCAAGTAGATTGTTGGACAGAGGGTATGCGGTaGCCTCTTTATCAAGAATCG | + |
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Preference number: 4 (lower is better) Translates to: ILISAMMNVFLKNQVDCWTEGMR*PLYQES Trigger: CGATTCTTGATAAAGAGGCCACCGCATACCCTCTGT...CCAACAATCTACTTGGTTCTTTAGGAAGACATTCATCATAGCAGAGATTAGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CCA 90 bp | GGTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGCTACACCCAAACTATaGTCATCCATCTTGACCAAG | + |
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Preference number: 4 (lower is better) Translates to: GAHRVLLFYYNNLRYTPGATPKL*SSILTK Trigger: CTTGGTCAAGATGGATGACCATAGTTTGGGTGTAGC...ACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CCA 90 bp | GTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGACAAGTTTCTCTCACTaGTTTGGACAGCTACACCCA | + |
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Preference number: 4 (lower is better) Translates to: VHIEFYCSITIISGTLQVTSFSH*FGQLHP Trigger: TGGGTGTAGCTGTCCAAACCAGTGAGAGAAACTTGT...CACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CCA 90 bp | GGTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTTGGTCTGAAGGAACTTaGCGTTGCAAGAGAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: GAHRVLLFYYNNLRYTPGWSEGT*RCKRKV Trigger: GACTTTTCTCTTGCAACGCCAAGTTCCTTCAGACCA...ACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR TCA 90 bp | GTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGCAGTTTCAAATATTCTaGAGGGGGCCTTTCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: VHIEFYCSITIISGTLQVQFQIF*RGPFFP Trigger: TGGAAAGAAAGGCCCCCTTCAGAATATTTGAAACTG...CACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR GCA 90 bp | CAGGTGTTTGTCAACATGAATTCTAATCTCTGCTATGATGAATGTCTTCCTAAAGAAGGAACTTGGCGTTaGAAGAGAAAAGTCGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QVFVNMNSNLCYDECLPKEGTWR*KRKVAS Trigger: AGAAGCGACTTTTCTCTTGCAACGCCAAGTTCCTTC...TTTAGGAAGACATTCATCATAGCAGAGATTAGAATTCATGTTGACAAACACCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR TCA 90 bp | CAGGTGTTTGTCAACATGAATTCTAATCTCTGCTATGATGAATGTCTTCCTAAAATGTCCCCGCGGTTTTaGGTAATAGAGGTTATAATG | + |
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Preference number: 4 (lower is better) Translates to: QVFVNMNSNLCYDECLPKMSPRF*VIEVIM Trigger: CATTATAACCTCTATTACTCAAAACCGCGGGGACAT...TTTAGGAAGACATTCATCATAGCAGAGATTAGAATTCATGTTGACAAACACCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CCA 90 bp | ATTCTAATCTCTGCTATGATGAATGTCTTCCTAAAGAACCAAGTAGATTGTTGGTTTCTCTCACTGGTTTaGACAGCTACACCCAAACTA | + |
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Preference number: 4 (lower is better) Translates to: ILISAMMNVFLKNQVDCWFLSLV*TATPKL Trigger: TAGTTTGGGTGTAGCTGTCCAAACCAGTGAGAGAAA...CCAACAATCTACTTGGTTCTTTAGGAAGACATTCATCATAGCAGAGATTAGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR GCA 90 bp | GGTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTAGCCAAAACCTGAAATaGACTTTCCTCAATAATAGC | + |
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Preference number: 4 (lower is better) Translates to: GAHRVLLFYYNNLRYTPGSQNLK*TFLNNS Trigger: GCTATTATTGAGGAAAGTGCATTTCAGGTTTTGGCT...ACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CCA 90 bp | GGTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTAGAGAAGCAGATCTTTaGAAGTTCTGTCTCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: GAHRVLLFYYNNLRYTPGREADL*KFCLIF Trigger: GAAAATGAGACAGAACTTCCAAAGATCTGCTTCTCT...ACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CCA 90 bp | TTGGACAGCTACACCCAAACTATGGTCATCCATCTTGACCAAGTCTaGTCTGAAGTGTTTGTTCTTGAAATCAGGAAGGGAAGGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LDSYTQTMVIHLDQV*SEVFVLEIRKGRSS Trigger: GCTGCTCCTTCCCTTCCTGATTTCAAGAACAAACACTTCAGACCAGACTTGGTCAAGATGGATGACCATAGTTTGGGTGTAGCTGTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CAA 90 bp | GTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGTCTGGTCTGAAGTGTTaGTTCTTGAAATCAGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: VHIEFYCSITIISGTLQVSGLKC*FLKSGR Trigger: CCTTCCTGATTTCAAGAACAAACACTTCAGACCAGA...CACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CAA 90 bp | ATTCTAATCTCTGCTATGATGAATGTCTTCCTAAAGAACCAAGTAGATTGTTGGTCCAACACTTCCTTCTaGAAGAGCTCTTCATTGATC | + |
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Preference number: 5 (lower is better) Translates to: ILISAMMNVFLKNQVDCWSNTSF*KSSSLI Trigger: GATCAATGAAGAGCTCTTCAAGAAGGAAGTGTTGGA...CCAACAATCTACTTGGTTCTTTAGGAAGACATTCATCATAGCAGAGATTAGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CAA 90 bp | GGTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGAGAGAAGCAGATCTTaGGAAGTTCTGTCTCATTTT | + |
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Preference number: 5 (lower is better) Translates to: GAHRVLLFYYNNLRYTPGERSRS*EVLSHF Trigger: AAAATGAGACAGAACTTCCAAAGATCTGCTTCTCTC...ACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CAA 90 bp | GGTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTTTCTGGGGAAGGTCATaGAAAATAAGTTACTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: GAHRVLLFYYNNLRYTPGFWGRS*KISYCL Trigger: AAGACAGTAACTTATTTTCAATGACCTTCCCCAGAA...ACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CAA 90 bp | GTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTGAGTCTCTCAGAAAGTTaGGATTCTGGTAGAATTGTA | + |
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Preference number: 5 (lower is better) Translates to: VHIEFYCSITIISGTLQVSLSES*DSGRIV Trigger: TACAATTCTACCAGAATCCAAACTTTCTGAGAGACT...CACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS-3UTR CAA 90 bp | GGTGCACATAGAGTTTTATTGTTCTATTACAATAATCTCAGGTACACTCCAGGTAAAGGAAGGCTCTCCTaGCATTTCAATACAACTATT | + |
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Preference number: 5 (lower is better) Translates to: GAHRVLLFYYNNLRYTPGKGRLS*HFNTTI Trigger: AATAGTTGTATTGAAATGCAAGGAGAGCCTTCCTTT...ACCTGGAGTGTACCTGAGATTATTGTAATAGAACAATAAAACTCTATGTGCACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS TCA 72 bp | CTTTCCTCAATAATAGCCCATAAGTCTGAGTCCTTCTaGCCTGTGTTGTCACACCAAGGCTCGCCGGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: LSSIIAHKSESF*PVLSHQGSPEE Trigger: CTCTTCCGGCGAGCCTTGGTGTGACAACACAGGTCAGAAGGACTCAGACTTATGGGCTATTATTGAGGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS TCA 72 bp | GAGCAGGCCGATGTGTTAGAATTTCTTCAGGTGGTCTaGAGGAACTTGGCGTTGCAAGAGAAAAGTCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: EQADVLEFLQVV*RNLALQEKSRF Trigger: GAAGCGACTTTTCTCTTGCAACGCCAAGTTCCTTCAGACCACCTGAAGAAATTCTAACACATCGGCCTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CAA 90 bp | CCCAAACTATGGTCATCCATCTTGACCAAGTCTGGTCTGAAGTGTTaGTTCTTGAAATCAGGAAGGGAAGGAGCAGCTCCACGAGAAACT | + |
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Preference number: 6 (lower is better) Translates to: PKLWSSILTKSGLKC*FLKSGREGAAPRET Trigger: AGTTTCTCGTGGAGCTGCTCCTTCCCTTCCTGATTTCAAGAACAAACACTTCAGACCAGACTTGGTCAAGATGGATGACCATAGTTTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS TCA 72 bp | TCGCTTCTGATGACATCCATCGTATCAGAACCCCCTTaGGCAAGAGAAGGCTTCTGTCTCAGATATACATTT | + |
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Preference number: 6 (lower is better) Translates to: SLLMTSIVSEPP*AREGFCLRYTF Trigger: AAATGTATATCTGAGACAGAAGCCTTCTCTTGCTCAAGGGGGTTCTGATACGATGGATGTCATCAGAAGCGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CCA 72 bp | TCTTCAGCCAGAAAGTCGGGGAGAGAAGCAGATCTTTaGAAGTTCTGTCTCATTTTCCTGAATCCATACAGA | + |
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Preference number: 6 (lower is better) Translates to: SSARKSGREADL*KFCLIFLNPYR Trigger: TCTGTATGGATTCAGGAAAATGAGACAGAACTTCCAAAGATCTGCTTCTCTCCCCGACTTTCTGGCTGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CAA 72 bp | TTCTTCAGCCAGAAAGTCGGGGAGAGAAGCAGATCTTaGGAAGTTCTGTCTCATTTTCCTGAATCCATACAG | + |
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Preference number: 6 (lower is better) Translates to: FFSQKVGERSRS*EVLSHFPESIQ Trigger: CTGTATGGATTCAGGAAAATGAGACAGAACTTCCAAAGATCTGCTTCTCTCCCCGACTTTCTGGCTGAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CCA 72 bp | TACACCCAAACTATGGTCATCCATCTTGACCAAGTCTaGTCTGAAGTGTTTGTTCTTGAAATCAGGAAGGGA | + |
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Preference number: 6 (lower is better) Translates to: YTQTMVIHLDQV*SEVFVLEIRKG Trigger: TCCCTTCCTGATTTCAAGAACAAACACTTCAGACCAGACTTGGTCAAGATGGATGACCATAGTTTGGGTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CAA 72 bp | AAAGTGAGGAAACCCAGGCTGAAAGGAAGGCTCTCCTaGCATTTCAATACAACTATTCCACAAGTGAGACAT | + |
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Preference number: 6 (lower is better) Translates to: KVRKPRLKGRLS*HFNTTIPQVRH Trigger: ATGTCTCACTTGTGGAATAGTTGTATTGAAATGCAAGGAGAGCCTTCCTTTCAGCCTGGGTTTCCTCACTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CAA 72 bp | ACAACTATTCCACAAGTGAGACATGTCCCCGCGGTTTaGAGTAATAGAGGTTATAATGAAATTCACAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: TTIPQVRHVPAV*SNRGYNEIHSA Trigger: AGCACTGTGAATTTCATTATAACCTCTATTACTCAAAACCGCGGGGACATGTCTCACTTGTGGAATAGTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS TCA 72 bp | TTGAGCAAGAGAAGGCTTCTGTCTCAGATATACATTTaGAATACTAGAGCTGGACAACAAGTTTCTCTCACT | + |
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Preference number: 6 (lower is better) Translates to: LSKRRLLSQIYI*NTRAGQQVSLT Trigger: AGTGAGAGAAACTTGTTGTCCAGCTCTAGTATTTCAAATGTATATCTGAGACAGAAGCCTTCTCTTGCTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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| CDS CAA 72 bp | GTTCTGTCTCATTTTCCTGAATCCATACAGATTAAGTaGTCGAACCAAACTTTTCATGCTATCAGTTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: VLSHFPESIQIK*SNQTFHAISFK Trigger: TTTGAAACTGATAGCATGAAAAGTTTGGTTCGACAACTTAATCTGTATGGATTCAGGAAAATGAGACAGAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062085.6 |
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