Pregenerated sensors for HSF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045802Ensembl transcript IDs: ENSMUST00000059003.5, ENSMUST00000119035.9, ENSMUST00000164693.8, ENSMUST00000179832.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATCTCCAAAATCACACATaGGTATCTCATCCAATAGGA | + |
|
Preference number: 3 (lower is better) Translates to: GLRMRKGNTLDSPLASIHLQNHT*VSHPIG Trigger: TCCTATTGGATGAGATACCAATGTGTGATTTTGGAG...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| 3UTR-3UTR CAA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAACTCCAAAATCACACATaGGTATCTCATCCAATAGGA | + |
|
Preference number: 3 (lower is better) Translates to: SWSHKADMTFGGFFRSSKLQNHT*VSHPIG Trigger: TCCTATTGGATGAGATACCAATGTGTGATTTTGGAG...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| 3UTR TCA 72 bp | TGGAGGTTACATAATCATGGTCACATAAAGCTGATATaGCATTTGGTGGGTTCTTCAGATCCTCTAAAAGTC | + |
|
Preference number: 3 (lower is better) Translates to: WRLHNHGHIKLI*HLVGSSDPLKV Trigger: GACTTTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGATTATGTAACCTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| 3UTR TCA 72 bp | AACACACTGGATTCCCCATTGGCTTCCATACATAACTaGGGAATACTATTTTCAATAGTATCTTCTTGTAGA | + |
|
Preference number: 3 (lower is better) Translates to: NTLDSPLASIHN*GILFSIVSSCR Trigger: TCTACAAGAAGATACTATTGAAAATAGTATTCCTCAGTTATGTATGGAAGCCAATGGGGAATCCAGTGTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR GCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATCTTTTCAGTCTGCAGTaGAAACACCTTTCGGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHLFSLQ*KHLSET Trigger: GGTTTCCGAAAGGTGTTTGCACTGCAGACTGAAAAG...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR GCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATCTTGTCTTTTCAGTCTaGAGTGCAAACACCTTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHLVFSV*SANTFR Trigger: CCGAAAGGTGTTTGCACTGCAGACTGAAAAGACAAG...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR TCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATTTCATAGGTTTATCCTaGACTGGCACTTTAGGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHFIGLS*TGTLGC Trigger: ACACCCTAAAGTGCCAGTTCAGGATAAACCTATGAA...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
||
| CDS-3UTR GCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATCTTTCGTTTAATGTTTaGAAGAAGACAGGCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHLSFNV*KKTGFS Trigger: GGAGAAGCCTGTCTTCTTGCAAACATTAAACGAAAG...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATCATCAGAGTAGAGGCTaGCACCTTCAATTTTTATTG | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHHQSRG*HLQFLL Trigger: CAATAAAAATTGAAGGTGCCAGCCTCTACTCTGATG...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATTTCCTTCTTGTCCTCTaGAATACGGAAATACTGATG | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHFLLVL*NTEILM Trigger: CATCAGTATTTCCGTATTCCAGAGGACAAGAAGGAA...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
||
| CDS-3UTR TCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATCTTTCAAAATTGGCATaGCTCTATCAAGGAGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHLSKLA*LYQGDF Trigger: AAAGTCTCCTTGATAGAGTCATGCCAATTTTGAAAG...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATTCATTTGTGTATATTTaGCATCCATCTTCCTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHSFVYI*HPSSSA Trigger: TGCAGAGGAAGATGGATGCCAAATATACACAAATGA...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATGGATTCTTTCAAAATTaGCATGACTCTATCAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHGFFQN*HDSIKE Trigger: CTCCTTGATAGAGTCATGCCAATTTTGAAAGAATCC...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATTCAAATCCAACTGAATaGTCAGTGACTCTTCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: GLRMRKGNTLDSPLASIHSNPTE*SVTLHS Trigger: TGAATGAAGAGTCACTGACCATTCAGTTGGATTTGA...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR GCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAACTTGTCTTTTCAGTCTaGAGTGCAAACACCTTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKLVFSV*SANTFR Trigger: CCGAAAGGTGTTTGCACTGCAGACTGAAAAGACAAG...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
||
| CDS-3UTR TCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAAAGGCTTCTCCCCTTTTaGAAAGTGGATGCTGAAATT | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKRLLPF*KVDAEI Trigger: AATTTCAGCATCCACTTTTCAAAAGGGGAGAAGCCT...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
||
| CDS-3UTR TCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAATTCATAGGTTTATCCTaGACTGGCACTTTAGGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKFIGLS*TGTLGC Trigger: ACACCCTAAAGTGCCAGTTCAGGATAAACCTATGAA...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
||
| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAATCATCTCCACTTGGCTaGTCTCCAGATGAAATTAAC | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKSSPLG*SPDEIN Trigger: GTTAATTTCATCTGGAGACCAGCCAAGTGGAGATGA...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
||
| CDS-3UTR GCA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTCTTTTCAGTCTGCAGTaGAAACACCTTTCGGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCLFSLQ*KHLSET Trigger: GGTTTCCGAAAGGTGTTTGCACTGCAGACTGAAAAG...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
||
| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAACATCAGAGTAGAGGCTaGCACCTTCAATTTTTATTG | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKHQSRG*HLQFLL Trigger: CAATAAAAATTGAAGGTGCCAGCCTCTACTCTGATG...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAAAAATCCAAGATAAAATaGAGTACCCGTGTCAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKKSKIK*STRVSS Trigger: ACTGCTGACACGGGTACTCCATTTTATCTTGGATTT...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAACTGGTAATACTGGTATaGTCAAATCCAACTGAATGG | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKLVILV*SNPTEW Trigger: CCATTCAGTTGGATTTGACCATACCAGTATTACCAG...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR TCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAACTTTCAAAATTGGCATaGCTCTATCAAGGAGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKLSKLA*LYQGDF Trigger: AAAGTCTCCTTGATAGAGTCATGCCAATTTTGAAAG...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAAGATATTTTATTCTCCTaGCTTGTCTTTTCAGTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKDILFS*LVFSVC Trigger: GCAGACTGAAAAGACAAGCCAGGAGAATAAAATATC...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAATCATTTGTGTATATTTaGCATCCATCTTCCTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKSFVYI*HPSSSA Trigger: TGCAGAGGAAGATGGATGCCAAATATACACAAATGA...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAAGGATTCTTTCAAAATTaGCATGACTCTATCAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKGFFQN*HDSIKE Trigger: CTCCTTGATAGAGTCATGCCAATTTTGAAAGAATCC...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTTCATCTCCACTTGGCTaGTCTCCAGATGAAATTAAC | + |
|
Preference number: 4 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCSSPLG*SPDEIN Trigger: GTTAATTTCATCTGGAGACCAGCCAAGTGGAGATGA...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAATCAAATCCAACTGAATaGTCAGTGACTCTTCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKSNPTE*SVTLHS Trigger: TGAATGAAGAGTCACTGACCATTCAGTTGGATTTGA...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAATTGGTAGTACTTCTCTaGCAAAAGTTTCTTCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: SWSHKADMTFGGFFRSSKLVVLL*QKFLHS Trigger: TGAATGAAGAAACTTTTGCCAGAGAAGTACTACCAA...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164693.8 |
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| CDS-3UTR CCA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTAAATCCAAGATAAAATaGAGTACCCGTGTCAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCKSKIK*STRVSS Trigger: ACTGCTGACACGGGTACTCCATTTTATCTTGGATTT...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTCTGGTAATACTGGTATaGTCAAATCCAACTGAATGG | + |
|
Preference number: 4 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCLVILV*SNPTEW Trigger: CCATTCAGTTGGATTTGACCATACCAGTATTACCAG...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTGATATTTTATTCTCCTaGCTTGTCTTTTCAGTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCDILFS*LVFSVC Trigger: GCAGACTGAAAAGACAAGCCAGGAGAATAAAATATC...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTTCATTTGTGTATATTTaGCATCCATCTTCCTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCSFVYI*HPSSSA Trigger: TGCAGAGGAAGATGGATGCCAAATATACACAAATGA...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS-3UTR CCA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTGGATTCTTTCAAAATTaGCATGACTCTATCAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCGFFQN*HDSIKE Trigger: CTCCTTGATAGAGTCATGCCAATTTTGAAAGAATCC...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS-3UTR CAA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATTCCATAGCTTCCTTCTaGTCCTCTGGAATACGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: GLRMRKGNTLDSPLASIHSIASF*SSGIRK Trigger: TTTCCGTATTCCAGAGGACAAGAAGGAAGCTATGGA...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CAA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATTTTTATTCTCCTGGCTaGTCTTTTCAGTCTGCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: GLRMRKGNTLDSPLASIHFYSPG*SFQSAV Trigger: CACTGCAGACTGAAAAGACAAGCCAGGAGAATAAAA...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CAA 90 bp | GGGTTGAGAATGAGAAAAGGGAACACACTGGATTCCCCATTGGCTTCCATACATTTCATTTGTGTATATTaGGCATCCATCTTCCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: GLRMRKGNTLDSPLASIHFICVY*ASIFLC Trigger: GCAGAGGAAGATGGATGCCAAATATACACAAATGAA...ATGTATGGAAGCCAATGGGGAATCCAGTGTGTTCCCTTTTCTCATTCTCAACCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CAA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAATCCATAGCTTCCTTCTaGTCCTCTGGAATACGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: SWSHKADMTFGGFFRSSKSIASF*SSGIRK Trigger: TTTCCGTATTCCAGAGGACAAGAAGGAAGCTATGGA...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CAA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAATTCATTTGTGTATATTaGGCATCCATCTTCCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SWSHKADMTFGGFFRSSKFICVY*ASIFLC Trigger: GCAGAGGAAGATGGATGCCAAATATACACAAATGAA...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS-3UTR CAA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTTCCATAGCTTCCTTCTaGTCCTCTGGAATACGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCSIASF*SSGIRK Trigger: TTTCCGTATTCCAGAGGACAAGAAGGAAGCTATGGA...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS-3UTR CAA 90 bp | TCATGGTCACATAAAGCTGATATGACATTTGGTGGGTTCTTCAGATCCTCTAAACGGAAACCATACATGTaGAGTTGTCTAATAAAGCTT | + |
|
Preference number: 5 (lower is better) Translates to: SWSHKADMTFGGFFRSSKRKPYM*SCLIKL Trigger: AAGCTTTATTAGACAACTCAACATGTATGGTTTCCG...TTTAGAGGATCTGAAGAACCCACCAAATGTCATATCAGCTTTATGTGACCATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164693.8 |
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| CDS-3UTR CAA 90 bp | TATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTGCCAAAGCTTGTCTAGATGTTTTTATTCTCCTGGCTaGTCTTTTCAGTCTGCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: YVFLWSEFYPSCQSLSRCFYSPG*SFQSAV Trigger: CACTGCAGACTGAAAAGACAAGCCAGGAGAATAAAA...ACATCTAGACAAGCTTTGGCAACTAGGATAAAATTCAGACCACAAGAAAACATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000119035.9 ENSMUST00000179832.8 |
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| CDS GCA 90 bp | TTCAATAGATATTTTATTCTCCTGGCTTGTCTTTTCAGTCTGCAGTaGAAACACCTTTCGGAAACCATACATGTTGAGTTGTCTAATAAA | + |
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Preference number: 5 (lower is better) Translates to: FNRYFILLACLFSLQ*KHLSETIHVELSNK Trigger: TTTATTAGACAACTCAACATGTATGGTTTCCGAAAGGTGTTTGCACTGCAGACTGAAAAGACAAGCCAGGAGAATAAAATATCTATTGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059003.5 ENSMUST00000164693.8 |
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| CDS GCA 72 bp | TTTCTTCATTCACAATCTGAAAGCTGTGGCCATCCTTaGCCCAGCGAATCACGTGGTCCAAGACAGCGTCAT | + |
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Preference number: 6 (lower is better) Translates to: FLHSQSESCGHP*PSESRGPRQRH Trigger: ATGACGCTGTCTTGGACCACGTGATTCGCTGGGGCAAGGATGGCCACAGCTTTCAGATTGTGAATGAAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059003.5 |
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| CDS TCA 72 bp | CCAAGACAGCGTCATCAACTAATATCCAGAGTTTGGTaGGAAAGTGAGGAACCATTGTCTTGCGAAATTGCT | + |
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Preference number: 6 (lower is better) Translates to: PRQRHQLISRVW*ESEEPLSCEIA Trigger: AGCAATTTCGCAAGACAATGGTTCCTCACTTTCTCACCAAACTCTGGATATTAGTTGATGACGCTGTCTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059003.5 |
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| CDS CCA 72 bp | GGCACTTTAGGGTGTTCTCCATCATCTCCACTTGGCTaGTCTCCAGATGAAATTAACTTTTTGGATTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: GTLGCSPSSPLG*SPDEINFLDSF Trigger: GAAAGAATCCAAAAAGTTAATTTCATCTGGAGACCAGCCAAGTGGAGATGATGGAGAACACCCTAAAGTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000059003.5 ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS GCA 72 bp | TATTTTATTCTCCTGGCTTGTCTTTTCAGTCTGCAGTaGAAACACCTTTCGGAAACCATACATGTTGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: YFILLACLFSLQ*KHLSETIHVEL Trigger: CAACTCAACATGTATGGTTTCCGAAAGGTGTTTGCACTGCAGACTGAAAAGACAAGCCAGGAGAATAAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059003.5 ENSMUST00000164693.8 |
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| CDS CCA 72 bp | CAGTCACAATTTTCTGAAACTCATCAGAGTAGAGGCTaGCACCTTCAATTTTTATTGTTGGCACCTTTCGTT | + |
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Preference number: 6 (lower is better) Translates to: QSQFSETHQSRG*HLQFLLLAPFV Trigger: AACGAAAGGTGCCAACAATAAAAATTGAAGGTGCCAGCCTCTACTCTGATGAGTTTCAGAAAATTGTGACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000059003.5 ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS CAA 90 bp | TTGTGTATATTTGGCATCCATCTTCCTCTGCATGTCTTTAAACTCTaGCATTTCAGTCACAATTTTCTGAAACTCATCAGAGTAGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LCIFGIHLPLHVFKL*HFSHNFLKLIRVEA Trigger: AGCCTCTACTCTGATGAGTTTCAGAAAATTGTGACTGAAATGCAAGAGTTTAAAGACATGCAGAGGAAGATGGATGCCAAATATACACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059003.5 ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS CCA 72 bp | CAGATTCTTCAGTTATTTGTTCTGGTAATACTGGTATaGTCAAATCCAACTGAATGGTCAGTGACTCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: QILQLFVLVILV*SNPTEWSVTLH Trigger: ATGAAGAGTCACTGACCATTCAGTTGGATTTGACCATACCAGTATTACCAGAACAAATAACTGAAGAATCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059003.5 ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS CAA 72 bp | TTTGGCATCCATCTTCCTCTGCATGTCTTTAAACTCTaGCATTTCAGTCACAATTTTCTGAAACTCATCAGA | + |
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Preference number: 6 (lower is better) Translates to: FGIHLPLHVFKL*HFSHNFLKLIR Trigger: TCTGATGAGTTTCAGAAAATTGTGACTGAAATGCAAGAGTTTAAAGACATGCAGAGGAAGATGGATGCCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059003.5 ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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| CDS CAA 72 bp | GTCTGCAGTGCAAACACCTTTCGGAAACCATACATGTaGAGTTGTCTAATAAAGCTTGTTATTTTGTTATGT | + |
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Preference number: 6 (lower is better) Translates to: VCSANTFRKPYM*SCLIKLVILLC Trigger: ACATAACAAAATAACAAGCTTTATTAGACAACTCAACATGTATGGTTTCCGAAAGGTGTTTGCACTGCAGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059003.5 ENSMUST00000164693.8 |
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| CDS GCA 72 bp | TGTTTCATTTGTGTATATTTGGCATCCATCTTCCTCTaGATGTCTTTAAACTCTTGCATTTCAGTCACAATT | + |
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Preference number: 6 (lower is better) Translates to: CFICVYLASIFL*MSLNSCISVTI Trigger: AATTGTGACTGAAATGCAAGAGTTTAAAGACATGCAGAGGAAGATGGATGCCAAATATACACAAATGAAACA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059003.5 ENSMUST00000119035.9 ENSMUST00000164693.8 ENSMUST00000179832.8 |
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