Pregenerated sensors for HSF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019878Ensembl transcript IDs: ENSMUST00000079833.6, ENSMUST00000220042.2, ENSMUST00000220353.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAAAACCACAAGGCACAGACAACAGTGGAGTTCCATTCACACAGCTaGGGACAAAGACTGAGACAGGAAATCAGAATGGACATTAAAAAT | + |
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Preference number: 1 (lower is better) Translates to: QNHKAQTTVEFHSHS*GQRLRQEIRMDIKN Trigger: ATTTTTAATGTCCATTCTGATTTCCTGTCTCAGTCTTTGTCCCCAGCTGTGTGAATGGAACTCCACTGTTGTCTGTGCCTTGTGGTTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR TCA 90 bp | ACTCGTGTACACTTTGCCGTTTCTGCTAACAGGAATAAATTTCTCTaGACCAACAAAGACATGAAATATTACAAGATACAGGCACTTTAT | + |
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Preference number: 1 (lower is better) Translates to: TRVHFAVSANRNKFL*TNKDMKYYKIQALY Trigger: ATAAAGTGCCTGTATCTTGTAATATTTCATGTCTTTGTTGGTTCAGAGAAATTTATTCCTGTTAGCAGAAACGGCAAAGTGTACACGAGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| 3UTR-3UTR CCA 90 bp | TATTCAATTTTATCCCAGAGAAAATGCACAAACGGTAACACAGCAGCAAGTCCACACGTAAGGGTTCTCTaGCTGGTTCACTCTGCTCTC | + |
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Preference number: 2 (lower is better) Translates to: YSILSQRKCTNGNTAASPHVRVL*LVHSAL Trigger: GAGAGCAGAGTGAACCAGCCAGAGAACCCTTACGTG...TGGACTTGCTGCTGTGTTACCGTTTGTGCATTTTCTCTGGGATAAAATTGAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCTTCCTATGAGAAGGAAAAACCACTTCATGTGGGATCACTTCCAAAGACGACAGTCGAGTAGCATCTaGAAGCTATGTGAGAGTATG | + |
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Preference number: 2 (lower is better) Translates to: LLPMRRKNHFMWDHFQRRQSSSI*KLCESM Trigger: CATACTCTCACATAGCTTTCAGATGCTACTCGACTG...TCGTCTTTGGAAGTGATCCCACATGAAGTGGTTTTTCCTTCTCATAGGAAGAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| 3UTR-3UTR TCA 90 bp | AAAGCCAAGGCTACTTCTATGATAATTGTAGTCTTTACAGAAAGGCGTCCGTGTGCTAAACTGTCTTCCTaGGAGCATAGCTTGGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: KAKATSMIIVVFTERRPCAKLSS*EHSLEV Trigger: GACTTCCAAGCTATGCTCTCAGGAAGACAGTTTAGC...ACACGGACGCCTTTCTGTAAAGACTACAATTATCATAGAAGTAGCCTTGGCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR-3UTR TCA 90 bp | CCACTTCATGTGGGATCACTTCCAAAGACGACTCAACAAACAATAGTACTCGACAAGCAAAAGGTGCTTTaGTTCCACAGTATCGGATTA | + |
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Preference number: 2 (lower is better) Translates to: PLHVGSLPKTTQQTIVLDKQKVL*FHSIGL Trigger: TAATCCGATACTGTGGAATCAAAGCACCTTTTGCTT...GTCGAGTACTATTGTTTGTTGAGTCGTCTTTGGAAGTGATCCCACATGAAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| 3UTR-3UTR GCA 90 bp | CCCAGAGAAAATGCACAAACGGTAACACAGCAGCAAGTCCAGATTAAACCTGTAGGAAGTCCTCTAAACTaGAATCAATACTGTCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: PRENAQTVTQQQVQIKPVGSPLN*NQYCQG Trigger: ACCTTGACAGTATTGATTGCAGTTTAGAGGACTTCC...TACAGGTTTAATCTGGACTTGCTGCTGTGTTACCGTTTGTGCATTTTCTCTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR-3UTR TCA 90 bp | CACTTGGTTTATATCTTGAGCATCTTCACCATTTCAGAGAATAAGGTGAGCCAGTGTCATCTTCAACAATaGCAATGTCAGGATACTGGT | + |
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Preference number: 2 (lower is better) Translates to: HLVYILSIFTISENKVSQCHLQQ*QCQDTG Trigger: ACCAGTATCCTGACATTGTCATTGTTGAAGATGACA...CTGGCTCACCTTATTCTCTGAAATGGTGAAGATGCTCAAGATATAAACCAAGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR CAA 90 bp | CAGAAACCTGACCATTATAAAGTACAGCCAGCATTCTCAATGCACTaGGTTTATATCTTGAGCATCTTCACCATTTCAGAGAATAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: QKPDHYKVQPAFSMH*VYILSIFTISENKV Trigger: CACCTTATTCTCTGAAATGGTGAAGATGCTCAAGATATAAACCAAGTGCATTGAGAATGCTGGCTGTACTTTATAATGGTCAGGTTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR-3UTR GCA 90 bp | TCAATGCACTTGGTTTATATCTTGAGCATCTTCACCATTTCAGAGAATAAGGTGTTATCCCAGAGAAAATaGACAAACGGTAACACAGCA | + |
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Preference number: 2 (lower is better) Translates to: SMHLVYILSIFTISENKVLSQRK*TNGNTA Trigger: TGCTGTGTTACCGTTTGTGCATTTTCTCTGGGATAA...CACCTTATTCTCTGAAATGGTGAAGATGCTCAAGATATAAACCAAGTGCATTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGACTCACAGTGTGATAATGGACAACACAATTTAAAGCCACCTTCTTCCTATAGCTATGTGAGAGTATaGTTAGTGAGAAAAGCAAAA | + |
|
Preference number: 2 (lower is better) Translates to: CDSQCDNGQHNLKPPSSYSYVRV*LVRKAK Trigger: TTTTGCTTTTCTCACTAACCATACTCTCACATAGCT...ATAGGAAGAAGGTGGCTTTAAATTGTGTTGTCCATTATCACACTGTGAGTCACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| 3UTR GCA 72 bp | GTACCTGATGATGAGATAAGAAAAGCAAAGGGAGTCTaGTATACACATGAGCTCTGTTCCTCTTCAGCGACC | + |
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Preference number: 3 (lower is better) Translates to: VPDDEIRKAKGV*YTHELCSSSAT Trigger: GGTCGCTGAAGAGGAACAGAGCTCATGTGTATAGCAGACTCCCTTTGCTTTTCTTATCTCATCATCAGGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR TCA 72 bp | ACATTCTCTATGTATCTGGAGCTAGTACCACATCAGTaGCTGAGTACTCGTGTACACTTTGCCGTTTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: TFSMYLELVPHQ*LSTRVHFAVSA Trigger: AGCAGAAACGGCAAAGTGTACACGAGTACTCAGTCACTGATGTGGTACTAGCTCCAGATACATAGAGAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| 3UTR-3UTR CAA 90 bp | GCCAAGGCTACTTCTATGATAATTGTAGTCTTTACAGAAAGGCGTCCGTGTCTACCAGATTTGACAGGATaGGAGATAGTGAACTACTCT | + |
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Preference number: 3 (lower is better) Translates to: AKATSMIIVVFTERRPCLPDLTG*EIVNYS Trigger: AGAGTAGTTCACTATCTCCAATCCTGTCAAATCTGG...TAGACACGGACGCCTTTCTGTAAAGACTACAATTATCATAGAAGTAGCCTTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR CCA 72 bp | CTTGGGAACATGTCTTATATACTCCCAGCGGGTAGATaGGGCAAAATATACACAACCAATTCACATATAAGG | + |
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Preference number: 3 (lower is better) Translates to: LGNMSYILPAGR*GKIYTTNSHIR Trigger: CCTTATATGTGAATTGGTTGTGTATATTTTGCCCCATCTACCCGCTGGGAGTATATAAGACATGTTCCCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR-3UTR CAA 90 bp | CACTTGGTTTATATCTTGAGCATCTTCACCATTTCAGAGAATAAGGTGAGCCAGCCTAACAGGTTAATGTaGTCATTCAGAATGGAGTCC | + |
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Preference number: 3 (lower is better) Translates to: HLVYILSIFTISENKVSQPNRLM*SFRMES Trigger: GGACTCCATTCTGAATGACAACATTAACCTGTTAGG...CTGGCTCACCTTATTCTCTGAAATGGTGAAGATGCTCAAGATATAAACCAAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTCATGTGGGATCACTTCCAAAGACGACTCAACAAACAATAGTACTCGACATAAAGCAAAAGGTGCTTaGATTCCACAGTATCGGATT | + |
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Preference number: 3 (lower is better) Translates to: TSCGITSKDDSTNNSTRHKAKGA*IPQYRI Trigger: AATCCGATACTGTGGAATCAAAGCACCTTTTGCTTT...ATGTCGAGTACTATTGTTTGTTGAGTCGTCTTTGGAAGTGATCCCACATGAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| 3UTR TCA 72 bp | ATTAAAACGTATATGCCTAGGCAGTCGAGTAGCATCTaGAAGCTATGTGAGAGTATGGTTAGTGAGAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: IKTYMPRQSSSI*KLCESMVSEKS Trigger: GCTTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAGGCATATACGTTTTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAAACTCTGGGTCGGTTCTaGATCCAGGCTGCTATCCAG | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKTLGRF*IQAAIQ Trigger: CTGGATAGCAGCCTGGATCCAGAACCGACCCAGAGT...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAACGGACAAGCTTACTCTaGGTCGGTTCTGGATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKRTSLL*VGSGSR Trigger: CCTGGATCCAGAACCGACCCAGAGTAAGCTTGTCCG...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAACACGTAAGGGTTCTCTaGCTGGTTCACTCTGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKHVRVL*LVHSAL Trigger: GAGAGCAGAGTGAACCAGCCAGAGAACCCTTACGTG...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CCA 90 bp | ACTTCATGTGGGATCACTTCCAAAGACGACTCAACAAACAATAGTACTCGACATCACGTAAGGGTTCTCTaGCTGGTTCACTCTGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TSCGITSKDDSTNNSTRHHVRVL*LVHSAL Trigger: GAGAGCAGAGTGAACCAGCCAGAGAACCCTTACGTG...ATGTCGAGTACTATTGTTTGTTGAGTCGTCTTTGGAAGTGATCCCACATGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CCA 90 bp | TGTGACTCACAGTGTGATAATGGACAACACAATTTAAAGCCACCTTCTTCCTATACTCTGGGTCGGTTCTaGATCCAGGCTGCTATCCAG | + |
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Preference number: 4 (lower is better) Translates to: CDSQCDNGQHNLKPPSSYTLGRF*IQAAIQ Trigger: CTGGATAGCAGCCTGGATCCAGAACCGACCCAGAGT...ATAGGAAGAAGGTGGCTTTAAATTGTGTTGTCCATTATCACACTGTGAGTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CCA 90 bp | TGTGACTCACAGTGTGATAATGGACAACACAATTTAAAGCCACCTTCTTCCTATCGGACAAGCTTACTCTaGGTCGGTTCTGGATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: CDSQCDNGQHNLKPPSSYRTSLL*VGSGSR Trigger: CCTGGATCCAGAACCGACCCAGAGTAAGCTTGTCCG...ATAGGAAGAAGGTGGCTTTAAATTGTGTTGTCCATTATCACACTGTGAGTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CCA 90 bp | TCCTATGAGAAGGAAAAACCACTTCATGTGGGATCACTTCCAAAGACGACTCAATTCCGCTTCAGTCAATaGTTCCAGGCGGACAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: SYEKEKPLHVGSLPKTTQFRFSQ*FQADKL Trigger: AAGCTTGTCCGCCTGGAACCATTGACTGAAGCGGAA...TTGAGTCGTCTTTGGAAGTGATCCCACATGAAGTGGTTTTTCCTTCTCATAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATTCCGCTTCAGTCAATaGTTCCAGGCGGACAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKFRFSQ*FQADKL Trigger: AAGCTTGTCCGCCTGGAACCATTGACTGAAGCGGAA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR TCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAAGCTAAACTGTCTTCCTaGGAGCATAGCTTGGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKAKLSS*EHSLEV Trigger: GACTTCCAAGCTATGCTCTCAGGAAGACAGTTTAGC...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR GCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATGTTGCTGCTGGGCATaGTTTGCTCTTAGTTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKCCCWA*FALSSD Trigger: GTCAGAACTAAGAGCAAAGCATGCCCAGCAGCAACA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR TCA 90 bp | TCCTATGAGAAGGAAAAACCACTTCATGTGGGATCACTTCCAAAGACGACTCAAAAACTTTGTCCATTCTaGCTCCAGGTGATGAACTCG | + |
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Preference number: 4 (lower is better) Translates to: SYEKEKPLHVGSLPKTTQKLCPF*LQVMNS Trigger: CGAGTTCATCACCTGGAGTCAGAATGGACAAAGTTT...TTGAGTCGTCTTTGGAAGTGATCCCACATGAAGTGGTTTTTCCTTCTCATAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR GCA 90 bp | AAAGCCAAGGCTACTTCTATGATAATTGTAGTCTTTACAGAAAGGCGTCCGTGTTGTTGCTGCTGGGCATaGTTTGCTCTTAGTTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: KAKATSMIIVVFTERRPCCCCWA*FALSSD Trigger: GTCAGAACTAAGAGCAAAGCATGCCCAGCAGCAACA...ACACGGACGCCTTTCTGTAAAGACTACAATTATCATAGAAGTAGCCTTGGCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| CDS-3UTR GCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAACTGTTCAATAGCAGATaGAGAGTTCCCATCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKLFNSR*RVPIQE Trigger: TTCCTGGATGGGAACTCTGCATCTGCTATTGAACAG...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR GCA 90 bp | TGTGACTCACAGTGTGATAATGGACAACACAATTTAAAGCCACCTTCTTCCTATTGTTGCTGCTGGGCATaGTTTGCTCTTAGTTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: CDSQCDNGQHNLKPPSSYCCCWA*FALSSD Trigger: GTCAGAACTAAGAGCAAAGCATGCCCAGCAGCAACA...ATAGGAAGAAGGTGGCTTTAAATTGTGTTGTCCATTATCACACTGTGAGTCACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CCA 90 bp | CCACTTCATGTGGGATCACTTCCAAAGACGACTCAACAAACAATAGTACTCGACTTCAGTCCTGCTGTGTaGAACTTTATGATGGTGATT | + |
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Preference number: 4 (lower is better) Translates to: PLHVGSLPKTTQQTIVLDFSPAV*NFMMVI Trigger: AATCACCATCATAAAGTTCCACACAGCAGGACTGAA...GTCGAGTACTATTGTTTGTTGAGTCGTCTTTGGAAGTGATCCCACATGAAGTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CCA 90 bp | TCCTATGAGAAGGAAAAACCACTTCATGTGGGATCACTTCCAAAGACGACTCAAGCTCATCGACTTCTATaGGTTTATCTACAGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SYEKEKPLHVGSLPKTTQAHRLL*VYLQKA Trigger: TGCCTTCTGTAGATAAACCCATAGAAGTCGATGAGC...TTGAGTCGTCTTTGGAAGTGATCCCACATGAAGTGGTTTTTCCTTCTCATAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CCA 90 bp | AAAGCCAAGGCTACTTCTATGATAATTGTAGTCTTTACAGAAAGGCGTCCGTGTTTCAGTCCTGCTGTGTaGAACCTAAAGAATTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: KAKATSMIIVVFTERRPCFSPAV*NLKNWE Trigger: CTCCCAATTCTTTAGGTTCCACACAGCAGGACTGAA...ACACGGACGCCTTTCTGTAAAGACTACAATTATCATAGAAGTAGCCTTGGCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR CAA 72 bp | GTACAGCCAGCATTCTCAATGCACTTGGTTTATATCTaGAGCATCTTCACCATTTCAGAGAATAAGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: VQPAFSMHLVYI*SIFTISENKVS Trigger: GCTCACCTTATTCTCTGAAATGGTGAAGATGCTCAAGATATAAACCAAGTGCATTGAGAATGCTGGCTGTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| CDS-3UTR TCA 90 bp | TATTCAATTTTATCCCAGAGAAAATGCACAAACGGTAACACAGCAGCAAGTCCAAAACTTTGTCCATTCTaGCTCCAGGTGATGAACTCG | + |
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Preference number: 4 (lower is better) Translates to: YSILSQRKCTNGNTAASPKLCPF*LQVMNS Trigger: CGAGTTCATCACCTGGAGTCAGAATGGACAAAGTTT...TGGACTTGCTGCTGTGTTACCGTTTGTGCATTTTCTCTGGGATAAAATTGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| CDS-3UTR TCA 90 bp | CTTCTTCCTATGAGAAGGAAAAACCACTTCATGTGGGATCACTTCCAAAGACGATGTCATCTTCAACAATaGCAATGTCAGGATACTGGT | + |
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Preference number: 4 (lower is better) Translates to: LLPMRRKNHFMWDHFQRRCHLQQ*QCQDTG Trigger: ACCAGTATCCTGACATTGTCATTGTTGAAGATGACA...TCGTCTTTGGAAGTGATCCCACATGAAGTGGTTTTTCCTTCTCATAGGAAGAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR TCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATGTCATCTTCAACAATaGCAATGTCAGGATACTGGT | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKCHLQQ*QCQDTG Trigger: ACCAGTATCCTGACATTGTCATTGTTGAAGATGACA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR TCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATTTTCTTCCCTCTTCTaGCACATGTTGAACAACACT | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKFSSLF*HMLNNT Trigger: AGTGTTGTTCAACATGTGTCAGAAGAGGGAAGAAAA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR GCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAAGGAAGTCCTCTAAACTaGAATCAATACTGTCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKGSPLN*NQYCQG Trigger: ACCTTGACAGTATTGATTGCAGTTTAGAGGACTTCC...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR GCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATCTGTGGGATTCATCTaGACAGAACTAGTGAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKSVGFI*TELVKR Trigger: TCTTTTCACTAGTTCTGTGCAGATGAATCCCACAGA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220042.2 |
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| CDS-3UTR CCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATTCAGTCCTGCTGTGTaGAACTTTATGATGGTGATT | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKFSPAV*NFMMVI Trigger: AATCACCATCATAAAGTTCCACACAGCAGGACTGAA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR TCA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATCTTTGACTATGTGCTaGTATAGATTCTTCTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: LGSRVASESYVRVWLVRKSLTMC*YRFFFG Trigger: CCCAAAGAAGAATCTATATCAGCACATAGTCAAAGA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR TCA 90 bp | ACTTCATGTGGGATCACTTCCAAAGACGACTCAACAAACAATAGTACTCGACATTTTTCTTCCCTCTTCTaGCACATGTTGAACAACACT | + |
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Preference number: 4 (lower is better) Translates to: TSCGITSKDDSTNNSTRHFSSLF*HMLNNT Trigger: AGTGTTGTTCAACATGTGTCAGAAGAGGGAAGAAAA...ATGTCGAGTACTATTGTTTGTTGAGTCGTCTTTGGAAGTGATCCCACATGAAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR TCA 90 bp | AAAGCCAAGGCTACTTCTATGATAATTGTAGTCTTTACAGAAAGGCGTCCGTGTTCTTTGACTATGTGCTaGTATAGATTCTTCTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: KAKATSMIIVVFTERRPCSLTMC*YRFFFG Trigger: CCCAAAGAAGAATCTATATCAGCACATAGTCAAAGA...ACACGGACGCCTTTCTGTAAAGACTACAATTATCATAGAAGTAGCCTTGGCTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| 3UTR CAA 72 bp | GACCATTATAAAGTACAGCCAGCATTCTCAATGCACTaGGTTTATATCTTGAGCATCTTCACCATTTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: DHYKVQPAFSMH*VYILSIFTISE Trigger: CTCTGAAATGGTGAAGATGCTCAAGATATAAACCAAGTGCATTGAGAATGCTGGCTGTACTTTATAATGGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| CDS-3UTR TCA 90 bp | TGTGACTCACAGTGTGATAATGGACAACACAATTTAAAGCCACCTTCTTCCTATTCTTTGACTATGTGCTaGTATAGATTCTTCTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: CDSQCDNGQHNLKPPSSYSLTMC*YRFFFG Trigger: CCCAAAGAAGAATCTATATCAGCACATAGTCAAAGA...ATAGGAAGAAGGTGGCTTTAAATTGTGTTGTCCATTATCACACTGTGAGTCACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS CCA 90 bp | CTAGCTTCCGCTTCAGTCAATGGTTCCAGGCGGACAAGCTTACTCTaGGTCGGTTCTGGATCCAGGCTGCTATCCAGGAGCTCATCGACT | + |
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Preference number: 5 (lower is better) Translates to: LASASVNGSRRTSLL*VGSGSRLLSRSSST Trigger: AGTCGATGAGCTCCTGGATAGCAGCCTGGATCCAGAACCGACCCAGAGTAAGCTTGTCCGCCTGGAACCATTGACTGAAGCGGAAGCTAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS GCA 90 bp | GTTCCAGGCGGACAAGCTTACTCTGGGTCGGTTCTGGATCCAGGCTaGTATCCAGGAGCTCATCGACTTCTATGGGTTTATCTACAGAAG | + |
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Preference number: 5 (lower is better) Translates to: VPGGQAYSGSVLDPG*YPGAHRLLWVYLQK Trigger: CTTCTGTAGATAAACCCATAGAAGTCGATGAGCTCCTGGATAGCAGCCTGGATCCAGAACCGACCCAGAGTAAGCTTGTCCGCCTGGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS CCA 90 bp | TTCAGTCAATGGTTCCAGGCGGACAAGCTTACTCTGGGTCGGTTCTaGATCCAGGCTGCTATCCAGGAGCTCATCGACTTCTATGGGTTT | + |
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Preference number: 5 (lower is better) Translates to: FSQWFQADKLTLGRF*IQAAIQELIDFYGF Trigger: AAACCCATAGAAGTCGATGAGCTCCTGGATAGCAGCCTGGATCCAGAACCGACCCAGAGTAAGCTTGTCCGCCTGGAACCATTGACTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CAA 90 bp | CCCAAAACCACAAGGCACAGACAACAGTGGAGTTCCATTCACACAGCTGGGGACTCTTTGGGGCTCCATTaGTGTTTAGAAGTAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: PKTTRHRQQWSSIHTAGDSLGLH*CLEVEA Trigger: GGCCTCTACTTCTAAACACAAATGGAGCCCCAAAGA...GTCCCCAGCTGTGTGAATGGAACTCCACTGTTGTCTGTGCCTTGTGGTTTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| CDS-3UTR CAA 90 bp | CCCAAAACCACAAGGCACAGACAACAGTGGAGTTCCATTCACACAGCTGGGGACAAGCTCGCCATGTTATaGTGTTTGAAGTACTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: PKTTRHRQQWSSIHTAGDKLAML*CLKYLG Trigger: TCCTAAGTACTTCAAACACAATAACATGGCGAGCTT...GTCCCCAGCTGTGTGAATGGAACTCCACTGTTGTCTGTGCCTTGTGGTTTTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| CDS-3UTR CAA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAAGCTGCTGGGCATGCTTaGCTCTTAGTTCTGACACCT | + |
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Preference number: 5 (lower is better) Translates to: LGSRVASESYVRVWLVRKAAGHA*LLVLTP Trigger: AGGTGTCAGAACTAAGAGCAAAGCATGCCCAGCAGC...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CAA 90 bp | ACTTCATGTGGGATCACTTCCAAAGACGACTCAACAAACAATAGTACTCGACATGCTGCTGGGCATGCTTaGCTCTTAGTTCTGACACCT | + |
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Preference number: 5 (lower is better) Translates to: TSCGITSKDDSTNNSTRHAAGHA*LLVLTP Trigger: AGGTGTCAGAACTAAGAGCAAAGCATGCCCAGCAGC...ATGTCGAGTACTATTGTTTGTTGAGTCGTCTTTGGAAGTGATCCCACATGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CAA 90 bp | ATAGTACCTGATGATGAGATAAGAAAAGCAAAGGGAGTCTGCTATACACATGAGGCTGCTGGGCATGCTTaGCTCTTAGTTCTGACACCT | + |
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Preference number: 5 (lower is better) Translates to: IVPDDEIRKAKGVCYTHEAAGHA*LLVLTP Trigger: AGGTGTCAGAACTAAGAGCAAAGCATGCCCAGCAGC...CTCATGTGTATAGCAGACTCCCTTTGCTTTTCTTATCTCATCATCAGGTACTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220353.2 |
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| CDS-3UTR CAA 90 bp | TCCTATGAGAAGGAAAAACCACTTCATGTGGGATCACTTCCAAAGACGACTCAATCTTTGGGGCTCCATTaGTGTTTAGAAGTAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: SYEKEKPLHVGSLPKTTQSLGLH*CLEVEA Trigger: GGCCTCTACTTCTAAACACAAATGGAGCCCCAAAGA...TTGAGTCGTCTTTGGAAGTGATCCCACATGAAGTGGTTTTTCCTTCTCATAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CAA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATCTTTGGGGCTCCATTaGTGTTTAGAAGTAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: LGSRVASESYVRVWLVRKSLGLH*CLEVEA Trigger: GGCCTCTACTTCTAAACACAAATGGAGCCCCAAAGA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CAA 90 bp | CTTCTTCCTATGAGAAGGAAAAACCACTTCATGTGGGATCACTTCCAAAGACGACCTAACAGGTTAATGTaGTCATTCAGAATGGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: LLPMRRKNHFMWDHFQRRPNRLM*SFRMES Trigger: GGACTCCATTCTGAATGACAACATTAACCTGTTAGG...TCGTCTTTGGAAGTGATCCCACATGAAGTGGTTTTTCCTTCTCATAGGAAGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CAA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAACCTAACAGGTTAATGTaGTCATTCAGAATGGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: LGSRVASESYVRVWLVRKPNRLM*SFRMES Trigger: GGACTCCATTCTGAATGACAACATTAACCTGTTAGG...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CAA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAAAAGCTCGCCATGTTATaGTGTTTGAAGTACTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: LGSRVASESYVRVWLVRKKLAML*CLKYLG Trigger: TCCTAAGTACTTCAAACACAATAACATGGCGAGCTT...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS-3UTR CAA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAATACTGGATAAGTTGTTaGTCTGGCTTGGATTTAGAT | + |
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Preference number: 5 (lower is better) Translates to: LGSRVASESYVRVWLVRKYWISC*SGLDLD Trigger: ATCTAAATCCAAGCCAGACAAACAACTTATCCAGTA...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CAA 90 bp | CTAGGCAGTCGAGTAGCATCTGAAAGCTATGTGAGAGTATGGTTAGTGAGAAAAAGTATACTGGATAAGTaGTTTGTCTGGCTTGGATTT | + |
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Preference number: 5 (lower is better) Translates to: LGSRVASESYVRVWLVRKSILDK*FVWLGF Trigger: AAATCCAAGCCAGACAAACAACTTATCCAGTATACT...TTTTCTCACTAACCATACTCTCACATAGCTTTCAGATGCTACTCGACTGCCTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS-3UTR CAA 90 bp | ACTTCATGTGGGATCACTTCCAAAGACGACTCAACAAACAATAGTACTCGACATAGTATACTGGATAAGTaGTTTGTCTGGCTTGGATTT | + |
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Preference number: 5 (lower is better) Translates to: TSCGITSKDDSTNNSTRHSILDK*FVWLGF Trigger: AAATCCAAGCCAGACAAACAACTTATCCAGTATACT...ATGTCGAGTACTATTGTTTGTTGAGTCGTCTTTGGAAGTGATCCCACATGAAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079833.6 |
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| CDS GCA 90 bp | TTATTCTCAGATTTTGTATTATTGATGTTATCTGTGGGATTCATCTaGACAGAACTAGTGAAAAGATCAACCAGAAGATCTGGGTCTATG | + |
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Preference number: 5 (lower is better) Translates to: LFSDFVLLMLSVGFI*TELVKRSTRRSGSM Trigger: CATAGACCCAGATCTTCTGGTTGATCTTTTCACTAGTTCTGTGCAGATGAATCCCACAGATAACATCAATAATACAAAATCTGAGAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220042.2 |
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| CDS CCA 72 bp | GAAGAGTGTGGCTTCACTAGCTTCCGCTTCAGTCAATaGTTCCAGGCGGACAAGCTTACTCTGGGTCGGTTC | + |
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Preference number: 6 (lower is better) Translates to: EECGFTSFRFSQ*FQADKLTLGRF Trigger: GAACCGACCCAGAGTAAGCTTGTCCGCCTGGAACCATTGACTGAAGCGGAAGCTAGTGAAGCCACACTCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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| CDS GCA 72 bp | GGACAAGCTTACTCTGGGTCGGTTCTGGATCCAGGCTaGTATCCAGGAGCTCATCGACTTCTATGGGTTTAT | + |
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Preference number: 6 (lower is better) Translates to: GQAYSGSVLDPG*YPGAHRLLWVY Trigger: ATAAACCCATAGAAGTCGATGAGCTCCTGGATAGCAGCCTGGATCCAGAACCGACCCAGAGTAAGCTTGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079833.6 ENSMUST00000220042.2 |
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