Pregenerated sensors for HSDL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034189Ensembl transcript IDs: ENSMUST00000036049.6, ENSMUST00000212065.2, ENSMUST00000212517.2
Found 119 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCATGCGTGATTAGGTCTCAGGTGGAGGTACTGCCGCCTATCACATaGACGAAGGTTCTCAGCAGTAAGGTAGCCGTCCCCGCCGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: PCVIRSQVEVLPPIT*TKVLSSKVAVPAEA Trigger: AGCCTCGGCGGGGACGGCTACCTTACTGCTGAGAACCTTCGTGCATGTGATAGGCGGCAGTACCTCCACCTGAGACCTAATCACGCATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR TCA 90 bp | ACCACAAGGGGCAACGCCACATCCTCCACTCTGCACAAGCTGCCATaGCTTCCAAGCTTCCACGTGCTGGGTATGAGACCCTCCCAAGAG | + |
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Preference number: 1 (lower is better) Translates to: TTRGNATSSTLHKLP*LPSFHVLGMRPSQE Trigger: CTCTTGGGAGGGTCTCATACCCAGCACGTGGAAGCTTGGAAGTCATGGCAGCTTGTGCAGAGTGGAGGATGTGGCGTTGCCCCTTGTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR TCA 90 bp | TCCACAGTGGGCAGGCAGACTAGCTCAGCAGAGAGGGTCTGCCTATaGGAGCTAGGAAGCCTAAAGGTGCCTGATTCGAGTCTTCTGCTG | + |
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Preference number: 1 (lower is better) Translates to: STVGRQTSSAERVCL*ELGSLKVPDSSLLL Trigger: CAGCAGAAGACTCGAATCAGGCACCTTTAGGCTTCCTAGCTCTCATAGGCAGACCCTCTCTGCTGAGCTAGTCTGCCTGCCCACTGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR CCA 90 bp | AAGGTTCCGAGTTCCTCCTTCCTTGGTAAAAAGCCATGTCCACAGTaGGCAGGCAGACTAGCTCAGCAGAGAGGGTCTGCCTATGAGAGC | + |
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Preference number: 1 (lower is better) Translates to: KVPSSSFLGKKPCPQ*AGRLAQQRGSAYES Trigger: GCTCTCATAGGCAGACCCTCTCTGCTGAGCTAGTCTGCCTGCCCACTGTGGACATGGCTTTTTACCAAGGAAGGAGGAACTCGGAACCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR TCA 90 bp | GGCTCCTCCTCCTCTGTCTCCAAGCATGGTAGTCTGCCCATGATCTaGGGACATGAAGACACTGATCTAGATCTGAGTCACAACTTAAAA | + |
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Preference number: 1 (lower is better) Translates to: GSSSSVSKHGSLPMI*GHEDTDLDLSHNLK Trigger: TTTTAAGTTGTGACTCAGATCTAGATCAGTGTCTTCATGTCCTCAGATCATGGGCAGACTACCATGCTTGGAGACAGAGGAGGAGGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR TCA 90 bp | ACGAAGGTTCTCAGCAGTAAGGTAGCCGTCCCCGCCGAGGCTCCTCCTCCTCTGCTGGCATTAAAGGCGTaGGCCCCCACGCCCAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: TKVLSSKVAVPAEAPPPLLALKA*APTPSL Trigger: CAGGCTGGGCGTGGGGGCTCACGCCTTTAATGCCAG...CAGAGGAGGAGGAGCCTCGGCGGGGACGGCTACCTTACTGCTGAGAACCTTCGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR GCA 90 bp | GGGCCTACAGGTGATGGGATGTCACTAAAGCAACTCCATCCAAGTCCCAGCGTGCAGGCTTCATGGCCATaGGCCCTGGGCCAACCATGT | + |
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Preference number: 2 (lower is better) Translates to: GPTGDGMSLKQLHPSPSVQASWP*ALGQPC Trigger: ACATGGTTGGCCCAGGGCGCATGGCCATGAAGCCTG...CACGCTGGGACTTGGATGGAGTTGCTTTAGTGACATCCCATCACCTGTAGGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGCACAGCGCAGCACCACAAGGGGCAACGCCACATCCTCCACTCTGCACAAACCCACCTACAGAGTaGGAAAGACAAAAGTACTCA | + |
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Preference number: 2 (lower is better) Translates to: PRHSAAPQGATPHPPLCTNPPTE*ERQKYS Trigger: TGAGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTT...TGTGCAGAGTGGAGGATGTGGCGTTGCCCCTTGTGGTGCTGCGCTGTGCCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR TCA 90 bp | TCACCATGCGTGATTAGGTCTCAGGTGGAGGTACTGCCGCCTATCACATGCACGAAGTCTTTCAGCACATaGAAGGGAGTAGCCCAGGCG | + |
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Preference number: 2 (lower is better) Translates to: SPCVIRSQVEVLPPITCTKSFST*KGVAQA Trigger: CGCCTGGGCTACTCCCTTTCATGTGCTGAAAGACTT...CGTGCATGTGATAGGCGGCAGTACCTCCACCTGAGACCTAATCACGCATGGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR GCA 90 bp | AGGCACAGCGCAGCACCACAAGGGGCAACGCCACATCCTCCACTCTGCACAAGCTCTACTGTTAACACCTaGACTCCCAGTTCACAGTTT | + |
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Preference number: 2 (lower is better) Translates to: RHSAAPQGATPHPPLCTSSTVNT*TPSSQF Trigger: AAACTGTGAACTGGGAGTGCAGGTGTTAACAGTAGA...GCTTGTGCAGAGTGGAGGATGTGGCGTTGCCCCTTGTGGTGCTGCGCTGTGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGCACAGCGCAGCACCACAAGGGGCAACGCCACATCCTCCACTCTGCACAACCCTCCCAAGAGGTTaGTTTTATAAACCAACGAAA | + |
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Preference number: 2 (lower is better) Translates to: PRHSAAPQGATPHPPLCTTLPRG*FYKPTK Trigger: TTTCGTTGGTTTATAAAACCAACCTCTTGGGAGGGT...TGTGCAGAGTGGAGGATGTGGCGTTGCCCCTTGTGGTGCTGCGCTGTGCCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR CCA 90 bp | GCTGGGTATGAGACCCTCCCAAGAGGTTGGTTTTATAAACCAACGAAAGCCACTTGTCCCTGGCTGGCCTaGAACTCACTATGTAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: AGYETLPRGWFYKPTKATCPWLA*NSLCSP Trigger: TGGGCTACATAGTGAGTTCCAGGCCAGCCAGGGACA...AGTGGCTTTCGTTGGTTTATAAAACCAACCTCTTGGGAGGGTCTCATACCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR CAA 90 bp | CACAGGACCTTACACAGAGCGGACAGTGCGTCTCTGCTGCTGTTTTaGTTTCCTGAACCAGAGTTTCACTATATAGCCCATGCTGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: HRTLHRADSASLLLF*FPEPEFHYIAHAGL Trigger: AAGGCCAGCATGGGCTATATAGTGAAACTCTGGTTCAGGAAACAAAAACAGCAGCAGAGACGCACTGTCCGCTCTGTGTAAGGTCCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR TCA 90 bp | ACCTATTATGTGTCCCAGCCTAGCAACAAAACCCACCTACAGAGTGGGAAAGACCAACCATGTGGTCCCTaGGGTTTGCTCACAGACGTA | + |
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Preference number: 2 (lower is better) Translates to: TYYVSQPSNKTHLQSGKDQPCGP*GLLTDV Trigger: TACGTCTGTGAGCAAACCTCAGGGACCACATGGTTG...GTCTTTCCCACTCTGTAGGTGGGTTTTGTTGCTAGGCTGGGACACATAATAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR TCA 90 bp | GTGATTAGGTCTCAGGTGGAGGTACTGCCGCCTATCACATGCACGAAGGTTCTCTGGAGCTATGCAGCATaGCACATGTCTACTGTTAAC | + |
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Preference number: 2 (lower is better) Translates to: VIRSQVEVLPPITCTKVLWSYAA*HMSTVN Trigger: GTTAACAGTAGACATGTGTCATGCTGCATAGCTCCA...GAGAACCTTCGTGCATGTGATAGGCGGCAGTACCTCCACCTGAGACCTAATCAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR TCA 90 bp | ACCTATTATGTGTCCCAGCCTAGCAACAAAACCCACCTACAGAGTGGGAAAGACAAGTCTTTCAGCACATaGAAGGGAGTAGCCCAGGCG | + |
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Preference number: 2 (lower is better) Translates to: TYYVSQPSNKTHLQSGKDKSFST*KGVAQA Trigger: CGCCTGGGCTACTCCCTTTCATGTGCTGAAAGACTT...GTCTTTCCCACTCTGTAGGTGGGTTTTGTTGCTAGGCTGGGACACATAATAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTCCCAGCCTAGCAACAAAACCCACCTACAGAGTGGGAAAGACAAAAGTACTTTAACTGCATGTCCCTaGCTGGCCTGGAACTCACTA | + |
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Preference number: 2 (lower is better) Translates to: VSQPSNKTHLQSGKDKSTLTACP*LAWNSL Trigger: TAGTGAGTTCCAGGCCAGCCAGGGACATGCAGTTAA...AGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTTTTGTTGCTAGGCTGGGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR TCA 90 bp | ACCTATTATGTGTCCCAGCCTAGCAACAAAACCCACCTACAGAGTGGGAAAGACGATACACAGGTGGAGTaGATGTGTTCTTCCAAACGC | + |
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Preference number: 2 (lower is better) Translates to: TYYVSQPSNKTHLQSGKDDTQVE*MCSSKR Trigger: GCGTTTGGAAGAACACATTCACTCCACCTGTGTATC...GTCTTTCCCACTCTGTAGGTGGGTTTTGTTGCTAGGCTGGGACACATAATAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR TCA 90 bp | CTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTAGGACATGGCCAACCATGTGGTCCCTaGGGTTTGCTCACAGACGTA | + |
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Preference number: 2 (lower is better) Translates to: LQSGKDKSTQRNNVVGHGQPCGP*GLLTDV Trigger: TACGTCTGTGAGCAAACCTCAGGGACCACATGGTTG...GCCATGTCCTACGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACCAGGCTTCATGGCCATaGGCCCTGGGCCAACCATGT | + |
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Preference number: 2 (lower is better) Translates to: KAAHISTTIPQTRDDFINQASWP*ALGQPC Trigger: ACATGGTTGGCCCAGGGCGCATGGCCATGAAGCCTG...GTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACAACCCTGGGCCAACCATGTaGTCCCTGAGGTTTGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: AAHISTTIPQTRDDFINNPGPTM*SLRFAH Trigger: GTGAGCAAACCTCAGGGACCACATGGTTGGCCCAGG...GTTGTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR GCA 90 bp | TACCTTATACCACGCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACAAAGGACAGGTTTAACTaGATGTCCCTGGCTGGCCTG | + |
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Preference number: 2 (lower is better) Translates to: YLIPRTKAAHISTTIPQTKDRFN*MSLAGL Trigger: CAGGCCAGCCAGGGACATGCAGTTAAACCTGTCCTT...TGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGCGTGGTATAAGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACAACTGTCCCTGGCTGGCCTaGAACTCACTATGTAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: AAHISTTIPQTRDDFINNCPWLA*NSLCSP Trigger: TGGGCTACATAGTGAGTTCCAGGCCAGCCAGGGACA...GTTGTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR TCA 90 bp | AGGACCCTCACGCTAATAAAAGCATTCCCTACAATGTACACATTCATCACACAGGATACACAGGTGGAGTaGATGTGTTCTTCCAAACGC | + |
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Preference number: 2 (lower is better) Translates to: RTLTLIKAFPTMYTFITQDTQVE*MCSSKR Trigger: GCGTTTGGAAGAACACATTCACTCCACCTGTGTATC...CTGTGTGATGAATGTGTACATTGTAGGGAATGCTTTTATTAGCGTGAGGGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAGTGAGGAACCACCACTTAGGTACATCCAAAGACAACCTATTATGTGTCCCTCTACTGTTAACACCTaGACTCCCAGTTCACAGTTT | + |
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Preference number: 2 (lower is better) Translates to: LSEEPPLRYIQRQPIMCPSTVNT*TPSSQF Trigger: AAACTGTGAACTGGGAGTGCAGGTGTTAACAGTAGA...GGGACACATAATAGGTTGTCTTTGGATGTACCTAAGTGGTGGTTCCTCACTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR CCA 90 bp | TACCTTATACCACGCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACATTAACTGCATGTCCCTaGCTGGCCTGGAACTCACTA | + |
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Preference number: 2 (lower is better) Translates to: YLIPRTKAAHISTTIPQTLTACP*LAWNSL Trigger: TAGTGAGTTCCAGGCCAGCCAGGGACATGCAGTTAA...TGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGCGTGGTATAAGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR TCA 90 bp | CACGCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTGGAGCTATGCAGCATaGCACATGTCTACTGTTAAC | + |
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Preference number: 2 (lower is better) Translates to: HAQKLPIFQPLFHKHVMIWSYAA*HMSTVN Trigger: GTTAACAGTAGACATGTGTCATGCTGCATAGCTCCA...AATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGCGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACAGCTCTAACAAGCTCTaGAGGGGGTCAGATAGAACA | + |
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Preference number: 2 (lower is better) Translates to: KAAHISTTIPQTRDDFINSSNKL*RGSDRT Trigger: TGTTCTATCTGACCCCCTTCAGAGCTTGTTAGAGCT...GTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR-3UTR CAA 90 bp | ACGAAGGTTCTCAGCAGTAAGGTAGCCGTCCCCGCCGAGGCTCCTCCTCCTCTGCTGGGCAAAGTGCACTaGGGCCTACAGGTGATGGGA | + |
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Preference number: 3 (lower is better) Translates to: TKVLSSKVAVPAEAPPPLLGKVH*GLQVMG Trigger: TCCCATCACCTGTAGGCCCAAGTGCACTTTGCCCAG...CAGAGGAGGAGGAGCCTCGGCGGGGACGGCTACCTTACTGCTGAGAACCTTCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR GCA 72 bp | GCAGCACCACAAGGGGCAACGCCACATCCTCCACTCTaGACAAGCTGCCATGACTTCCAAGCTTCCACGTGC | + |
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Preference number: 3 (lower is better) Translates to: AAPQGATPHPPL*TSCHDFQASTC Trigger: GCACGTGGAAGCTTGGAAGTCATGGCAGCTTGTGCAGAGTGGAGGATGTGGCGTTGCCCCTTGTGGTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR CCA 72 bp | TCAGGCTTCATGGCCATGCGCCCTGGGCCAACCATGTaGTCCCTGAGGTTTGCTCACAGACGTAACAGTCGG | + |
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Preference number: 3 (lower is better) Translates to: SGFMAMRPGPTM*SLRFAHRRNSR Trigger: CCGACTGTTACGTCTGTGAGCAAACCTCAGGGACCACATGGTTGGCCCAGGGCGCATGGCCATGAAGCCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR TCA 72 bp | GGCAACGCCACATCCTCCACTCTGCACAAGCTGCCATaGCTTCCAAGCTTCCACGTGCTGGGTATGAGACCC | + |
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Preference number: 3 (lower is better) Translates to: GNATSSTLHKLP*LPSFHVLGMRP Trigger: GGGTCTCATACCCAGCACGTGGAAGCTTGGAAGTCATGGCAGCTTGTGCAGAGTGGAGGATGTGGCGTTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR TCA 72 bp | CCTGTCTCAAGCTCCCAAGTGCTGGCATTAAAGGCGTaGGCCCCCACGCCCAGCCTGAGGAACATCTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: PVSSSQVLALKA*APTPSLRNILK Trigger: TTTCAAGATGTTCCTCAGGCTGGGCGTGGGGGCTCACGCCTTTAATGCCAGCACTTGGGAGCTTGAGACAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR TCA 72 bp | CCTCAGTCTCCTGCCTTCCTCCCTAATCACCATGCGTaGTTAGGTCTCAGGTGGAGGTACTGCCGCCTATCA | + |
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Preference number: 3 (lower is better) Translates to: PQSPAFLPNHHA*LGLRWRYCRLS Trigger: TGATAGGCGGCAGTACCTCCACCTGAGACCTAATCACGCATGGTGATTAGGGAGGAAGGCAGGAGACTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR TCA 72 bp | GGCAGGCAGACTAGCTCAGCAGAGAGGGTCTGCCTATaGGAGCTAGGAAGCCTAAAGGTGCCTGATTCGAGT | + |
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Preference number: 3 (lower is better) Translates to: GRQTSSAERVCL*ELGSLKVPDSS Trigger: ACTCGAATCAGGCACCTTTAGGCTTCCTAGCTCTCATAGGCAGACCCTCTCTGCTGAGCTAGTCTGCCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR CCA 72 bp | AGTTCCTCCTTCCTTGGTAAAAAGCCATGTCCACAGTaGGCAGGCAGACTAGCTCAGCAGAGAGGGTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: SSSFLGKKPCPQ*AGRLAQQRGSA Trigger: GGCAGACCCTCTCTGCTGAGCTAGTCTGCCTGCCCACTGTGGACATGGCTTTTTACCAAGGAAGGAGGAACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR TCA 72 bp | CTGATGTCCTGGGCAAAGTGCACTTGGGCCTACAGGTaGTGGGATGTCACTAAAGCAACTCCATCCAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: LMSWAKCTWAYR*WDVTKATPSKS Trigger: GGACTTGGATGGAGTTGCTTTAGTGACATCCCATCACCTGTAGGCCCAAGTGCACTTTGCCCAGGACATCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR CAA 90 bp | GTTCTCAGCAGTAAGGTAGCCGTCCCCGCCGAGGCTCCTCCTCCTCTGTCTCCACTCCCAGTTCACAGTTaGAAAATAACACTTTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: VLSSKVAVPAEAPPPLSPLPVHS*KITLFC Trigger: ACAGAAAAGTGTTATTTTCAAACTGTGAACTGGGAG...TGGAGACAGAGGAGGAGGAGCCTCGGCGGGGACGGCTACCTTACTGCTGAGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR CCA 72 bp | TTTGCTCACAGACGTAACAGTCGGCCTCATGAAGGATaGCGATGCACTAGGGACTTGGTAGGAGACGATACA | + |
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Preference number: 3 (lower is better) Translates to: FAHRRNSRPHEG*RCTRDLVGDDT Trigger: TGTATCGTCTCCTACCAAGTCCCTAGTGCATCGCCATCCTTCATGAGGCCGACTGTTACGTCTGTGAGCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| 3UTR TCA 72 bp | AGCGGACAGTGCGTCTCTGCTGCTGTTTTTGTTTCCTaGACCAGAGTTTCACTATATAGCCCATGCTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: SGQCVSAAVFVS*TRVSLYSPCWP Trigger: AGGCCAGCATGGGCTATATAGTGAAACTCTGGTTCAGGAAACAAAAACAGCAGCAGAGACGCACTGTCCGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR TCA 72 bp | TCCTCTGTCTCCAAGCATGGTAGTCTGCCCATGATCTaGGGACATGAAGACACTGATCTAGATCTGAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: SSVSKHGSLPMI*GHEDTDLDLSH Trigger: GTGACTCAGATCTAGATCAGTGTCTTCATGTCCTCAGATCATGGGCAGACTACCATGCTTGGAGACAGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR CCA 72 bp | CTTCCACGTGCTGGGTATGAGACCCTCCCAAGAGGTTaGTTTTATAAACCAACGAAAGCCACTAAGTTTCAG | + |
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Preference number: 3 (lower is better) Translates to: LPRAGYETLPRG*FYKPTKATKFQ Trigger: CTGAAACTTAGTGGCTTTCGTTGGTTTATAAAACCAACCTCTTGGGAGGGTCTCATACCCAGCACGTGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| 3UTR-3UTR CAA 90 bp | TACGTAAAGGACCCTCACGCTAATAAAAGCATTCCCTACAATGTACACATTCATCTCCCAGTTCACAGTTaGAAAATAACACTTTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: YVKDPHANKSIPYNVHIHLPVHS*KITLFC Trigger: ACAGAAAAGTGTTATTTTCAAACTGTGAACTGGGAG...ATGAATGTGTACATTGTAGGGAATGCTTTTATTAGCGTGAGGGTCCTTTACGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS-3UTR GCA 90 bp | AGACGTAACAGTCGGCCTCATGAAGGATGGCGATGCACTAGGGACTTGGTAGGATGCTTGGCCGCGGCCTaGAGCTTCTCCTCTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: RRNSRPHEGWRCTRDLVGCLAAA*SFSSSW Trigger: CCAGGAAGAGGAGAAGCTGCAGGCCGCGGCCAAGCA...TCCTACCAAGTCCCTAGTGCATCGCCATCCTTCATGAGGCCGACTGTTACGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS-3UTR GCA 90 bp | GTGAGCCCCCACGCCCAGCCTGAGGAACATCTTGAAAGCCAATACTATAATCAGAGCCACGGGCATCTGTaGAGGAAGCTGGCGGGCGCA | + |
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Preference number: 4 (lower is better) Translates to: VSPHAQPEEHLESQYYNQSHGHL*RKLAGA Trigger: TGCGCCCGCCAGCTTCCTGCACAGATGCCCGTGGCT...CTGATTATAGTATTGGCTTTCAAGATGTTCCTCAGGCTGGGCGTGGGGGCTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS-3UTR GCA 90 bp | AGGCACAGCGCAGCACCACAAGGGGCAACGCCACATCCTCCACTCTGCACAAGCTGGTCCTTTTTGAAATaGCCAGGGTCGACACTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: RHSAAPQGATPHPPLCTSWSFLK*PGSTLH Trigger: ATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCA...GCTTGTGCAGAGTGGAGGATGTGGCGTTGCCCCTTGTGGTGCTGCGCTGTGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| 3UTR CAA 72 bp | GGACAATACAGGAGCGAGCTGGTCACGCTCCAAGTGTaGAGGAAGCAGCCCGTTCTGTCCTCAGGCTTCATG | + |
|
Preference number: 4 (lower is better) Translates to: GQYRSELVTLQV*RKQPVLSSGFM Trigger: CATGAAGCCTGAGGACAGAACGGGCTGCTTCCTCAACACTTGGAGCGTGACCAGCTCGCTCCTGTATTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | ACCTATTATGTGTCCCAGCCTAGCAACAAAACCCACCTACAGAGTGGGAAAGACGAAGGCAGCCAGCTGTaGGGTGGGCTTGCAGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: TYYVSQPSNKTHLQSGKDEGSQL*GGLAAG Trigger: TCCTGCTGCAAGCCCACCCCACAGCTGGCTGCCTTC...GTCTTTCCCACTCTGTAGGTGGGTTTTGTTGCTAGGCTGGGACACATAATAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR TCA 90 bp | GTGTCCCAGCCTAGCAACAAAACCCACCTACAGAGTGGGAAAGACAAAAGTACTACTGCAGGGCTCGGCTaGAGTGGTCCAGATAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VSQPSNKTHLQSGKDKSTTAGLG*SGPDRP Trigger: AGGCCTATCTGGACCACTTCAGCCGAGCCCTGCAGT...AGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTTTTGTTGCTAGGCTGGGACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | CCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTAGGACATGGATCTGTGCAGGAAGCTaGCGGGCGCAGCCCCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: PTEWERQKYSKKQCRRTWICAGS*RAQPRC Trigger: GCAGCGGGGCTGCGCCCGCCAGCTTCCTGCACAGAT...CCATGTCCTACGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | AAGGGGCAACGCCACATCCTCCACTCTGCACAAGCTGCCATGACTTCCAAGCTTGGGACCAGTAGCCTGTaGTCCTTTTTGAAATGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: KGQRHILHSAQAAMTSKLGTSSL*SFLKCP Trigger: TGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCC...AAGCTTGGAAGTCATGGCAGCTTGTGCAGAGTGGAGGATGTGGCGTTGCCCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| CDS-3UTR GCA 90 bp | CACGCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTAGCCACGGGCATCTGTaGAGGAAGCTGGCGGGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: HAQKLPIFQPLFHKHVMISHGHL*RKLAGA Trigger: TGCGCCCGCCAGCTTCCTGCACAGATGCCCGTGGCT...AATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGCGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | ACAAAACCCACCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGATCTGTGCAGGAAGCTaGCGGGCGCAGCCCCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: TKPTYRVGKTKVLKETMSICAGS*RAQPRC Trigger: GCAGCGGGGCTGCGCCCGCCAGCTTCCTGCACAGAT...CGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTTTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR TCA 90 bp | GCTGGGTATGAGACCCTCCCAAGAGGTTGGTTTTATAAACCAACGAAAGCCACTATCTTCCATACTGCTTaGTCAGGTCGGGCCTGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: AGYETLPRGWFYKPTKATIFHTA*SGRACS Trigger: GGAGCAGGCCCGACCTGATCAAGCAGTATGGAAGAT...AGTGGCTTTCGTTGGTTTATAAAACCAACCTCTTGGGAGGGTCTCATACCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| CDS-3UTR CCA 90 bp | CCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTAGGACATGGGAAGGCAGCCAGCTGTaGGGTGGGCTTGCAGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: PTEWERQKYSKKQCRRTWEGSQL*GGLAAG Trigger: TCCTGCTGCAAGCCCACCCCACAGCTGGCTGCCTTC...CCATGTCCTACGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| 3UTR CAA 72 bp | CAGGATGAGTTACAAAGGTTCCGAGTTCCTCCTTCCTaGGTAAAAAGCCATGTCCACAGTGGGCAGGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: QDELQRFRVPPS*VKSHVHSGQAD Trigger: GTCTGCCTGCCCACTGTGGACATGGCTTTTTACCAAGGAAGGAGGAACTCGGAACCTTTGTAACTCATCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| CDS-3UTR GCA 90 bp | ACAAAACCCACCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTGCTTGGCCGCGGCCTaGAGCTTCTCCTCTTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TKPTYRVGKTKVLKETMSCLAAA*SFSSSW Trigger: CCAGGAAGAGGAGAAGCTGCAGGCCGCGGCCAAGCA...CGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | CCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTAGGACATGGGCGGTTGAGGAGGTTTaGACCCCACACCCAGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: PTEWERQKYSKKQCRRTWAVEEV*TPHPEP Trigger: TGGCTCTGGGTGTGGGGTGCAAACCTCCTCAACCGC...CCATGTCCTACGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | CTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTAGGACATGGCGCCTCTGCTGAAGTCTaGCACCAGGACAAGCGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LQSGKDKSTQRNNVVGHGASAEV*HQDKRL Trigger: GAGACGCTTGTCCTGGTGGCAGACTTCAGCAGAGGC...GCCATGTCCTACGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | CTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTAGGACATGGCGGTCCAGATAGGCCTTaGACGCAGAGAAGGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LQSGKDKSTQRNNVVGHGGPDRP*TQRRQP Trigger: TGGCTGCCTTCTCTGCGTCCAAGGCCTATCTGGACC...GCCATGTCCTACGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | GCTGGGTATGAGACCCTCCCAAGAGGTTGGTTTTATAAACCAACGAAAGCCACTCGAAGAGGAACTGAATaGAATGGGACCAGTAGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: AGYETLPRGWFYKPTKATRRGTE*NGTSSL Trigger: CAGGCTACTGGTCCCATTCCATTCAGTTCCTCTTCG...AGTGGCTTTCGTTGGTTTATAAAACCAACCTCTTGGGAGGGTCTCATACCCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| CDS-3UTR GCA 90 bp | GCTGGGTATGAGACCCTCCCAAGAGGTTGGTTTTATAAACCAACGAAAGCCACTCTTCCATGTAGCAATTaGAAGACCTGGCGATTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: AGYETLPRGWFYKPTKATLPCSN*KTWRFP Trigger: GGGAAATCGCCAGGTCTTGCAATTGCTACATGGAAG...AGTGGCTTTCGTTGGTTTATAAAACCAACCTCTTGGGAGGGTCTCATACCCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| CDS-3UTR GCA 90 bp | GTGTCCCAGCCTAGCAACAAAACCCACCTACAGAGTGGGAAAGACAAAAGTACTCTCGGGCATATACTGTaGGAAGAGGAACTGAATGGA | + |
|
Preference number: 4 (lower is better) Translates to: VSQPSNKTHLQSGKDKSTLGHIL*EEELNG Trigger: TCCATTCAGTTCCTCTTCGCACAGTATATGCCCGAG...AGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTTTTGTTGCTAGGCTGGGACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | TACCTTATACCACGCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACAGGTCCAGATAGGCCTTaGACGCAGAGAAGGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: YLIPRTKAAHISTTIPQTGPDRP*TQRRQP Trigger: TGGCTGCCTTCTCTGCGTCCAAGGCCTATCTGGACC...TGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGCGTGGTATAAGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR TCA 90 bp | AAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACACTGCAGGGCTCGGCTaGAGTGGTCCAGATAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: KAAHISTTIPQTRDDFINTAGLG*SGPDRP Trigger: AGGCCTATCTGGACCACTTCAGCCGAGCCCTGCAGT...GTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | ACAAAACCCACCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGGCCCATCTTCCATACTaGTTGATCAGGTCGGGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: TKPTYRVGKTKVLKETMSAHLPY*LIRSGL Trigger: CAGGCCCGACCTGATCAAGCAGTATGGAAGATGGGC...CGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | CTCAGTGAGGAACCACCACTTAGGTACATCCAAAGACAACCTATTATGTGTCCCCTCGGGCATATACTGTaGGAAGAGGAACTGAATGGA | + |
|
Preference number: 4 (lower is better) Translates to: LSEEPPLRYIQRQPIMCPLGHIL*EEELNG Trigger: TCCATTCAGTTCCTCTTCGCACAGTATATGCCCGAG...GGGACACATAATAGGTTGTCTTTGGATGTACCTAAGTGGTGGTTCCTCACTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | AAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACGCGGTTGAGGAGGTTTaGACCCCACACCCAGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: KAAHISTTIPQTRDDFINAVEEV*TPHPEP Trigger: TGGCTCTGGGTGTGGGGTGCAAACCTCCTCAACCGC...GTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | CTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACAACGTGTGCACCATCAGGCTaGCGGCTGCGATGTTCACGT | + |
|
Preference number: 4 (lower is better) Translates to: LPIFQPLFHKHVMILSTTCAPSG*RLRCSR Trigger: ACGTGAACATCGCAGCCGCCAGCCTGATGGTGCACA...CGTTGTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR TCA 90 bp | GCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTAATCTTCCATACTGCTTaGTCAGGTCGGGCCTGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: AQKLPIFQPLFHKHVMILIFHTA*SGRACS Trigger: GGAGCAGGCCCGACCTGATCAAGCAGTATGGAAGAT...TAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | AAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACGCCTCTGCTGAAGTCTaGCACCAGGACAAGCGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: KAAHISTTIPQTRDDFINASAEV*HQDKRL Trigger: GAGACGCTTGTCCTGGTGGCAGACTTCAGCAGAGGC...GTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | AGGACCCTCACGCTAATAAAAGCATTCCCTACAATGTACACATTCATCACACAGAAGGGGATCAGGCTCTaGACAAAGATCCCCTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RTLTLIKAFPTMYTFITQKGIRL*TKIPLE Trigger: CTCTAAGGGGATCTTTGTGCAGAGCCTGATCCCCTT...CTGTGTGATGAATGTGTACATTGTAGGGAATGCTTTTATTAGCGTGAGGGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS-3UTR CCA 90 bp | AAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACTGTGCACCATCAGGCTaGCGGCTGCGATGTTCACGT | + |
|
Preference number: 4 (lower is better) Translates to: KAAHISTTIPQTRDDFINCAPSG*RLRCSR Trigger: ACGTGAACATCGCAGCCGCCAGCCTGATGGTGCACA...GTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| 3UTR CAA 72 bp | TTACACAGAGCGGACAGTGCGTCTCTGCTGCTGTTTTaGTTTCCTGAACCAGAGTTTCACTATATAGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LHRADSASLLLF*FPEPEFHYIAH Trigger: ATGGGCTATATAGTGAAACTCTGGTTCAGGAAACAAAAACAGCAGCAGAGACGCACTGTCCGCTCTGTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| CDS-3UTR GCA 90 bp | AAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACGCCCATCTTCCATACTaGTTGATCAGGTCGGGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: KAAHISTTIPQTRDDFINAHLPY*LIRSGL Trigger: CAGGCCCGACCTGATCAAGCAGTATGGAAGATGGGC...GTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | CCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGTAGGACATGGTGGTCCTTTTTGAAATaGCCAGGGTCGACACTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: PTEWERQKYSKKQCRRTWWSFLK*PGSTLH Trigger: ATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCA...CCATGTCCTACGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR GCA 90 bp | CTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACAACGAAGGGGATCAGGCTCTaGACAAAGATCCCCTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LPIFQPLFHKHVMILSTTKGIRL*TKIPLE Trigger: CTCTAAGGGGATCTTTGTGCAGAGCCTGATCCCCTT...CGTTGTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | ACAAAACCCACCTACAGAGTGGGAAAGACAAAAGTACTCAAAGAAACAATGTCGAGCTTCTCCTCTTCCTaGCTGATCAGGATGACATTG | + |
|
Preference number: 4 (lower is better) Translates to: TKPTYRVGKTKVLKETMSSFSSS*LIRMTL Trigger: CAATGTCATCCTGATCAGCCAGGAAGAGGAGAAGCT...CGACATTGTTTCTTTGAGTACTTTTGTCTTTCCCACTCTGTAGGTGGGTTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | TACGTAAAGGACCCTCACGCTAATAAAAGCATTCCCTACAATGTACACATTCATGGGACCAGTAGCCTGTaGTCCTTTTTGAAATGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: YVKDPHANKSIPYNVHIHGTSSL*SFLKCP Trigger: TGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCC...ATGAATGTGTACATTGTAGGGAATGCTTTTATTAGCGTGAGGGTCCTTTACGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | TACGTAAAGGACCCTCACGCTAATAAAAGCATTCCCTACAATGTACACATTCATCGAAGAGGAACTGAATaGAATGGGACCAGTAGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: YVKDPHANKSIPYNVHIHRRGTE*NGTSSL Trigger: CAGGCTACTGGTCCCATTCCATTCAGTTCCTCTTCG...ATGAATGTGTACATTGTAGGGAATGCTTTTATTAGCGTGAGGGTCCTTTACGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS-3UTR CCA 90 bp | TACCTTATACCACGCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACAAGCAATTGCAAGACCTaGCGATTTCCCTGTACAAGA | + |
|
Preference number: 4 (lower is better) Translates to: YLIPRTKAAHISTTIPQTSNCKT*RFPCTR Trigger: TCTTGTACAGGGAAATCGCCAGGTCTTGCAATTGCT...TGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGCGTGGTATAAGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
||
| CDS-3UTR CCA 90 bp | CTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACAACGAGCTTCTCCTCTTCCTaGCTGATCAGGATGACATTG | + |
|
Preference number: 4 (lower is better) Translates to: LPIFQPLFHKHVMILSTTSFSSS*LIRMTL Trigger: CAATGTCATCCTGATCAGCCAGGAAGAGGAGAAGCT...CGTTGTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS CCA 90 bp | ACACTCTCGGCGACGGCGCCAGCCACGGGCATCTGTGCAGGAAGCTaGCGGGCGCAGCCCCGCTGCTGGTCACGTAGAAGGGGATCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: TLSATAPATGICAGS*RAQPRCWSRRRGSG Trigger: GCCTGATCCCCTTCTACGTGACCAGCAGCGGGGCTGCGCCCGCCAGCTTCCTGCACAGATGCCCGTGGCTGGCGCCGTCGCCGAGAGTGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS GCA 90 bp | CTCCACCATCCCTGGCAGCACGATGTGCACCATCAGGCTGGCGGCTaGGATGTTCACGTTCACGATGTCCCAGAGCGTGTCCTCGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: LHHPWQHDVHHQAGG*DVHVHDVPERVLGH Trigger: GTGCCCGAGGACACGCTCTGGGACATCGTGAACGTGAACATCGCAGCCGCCAGCCTGATGGTGCACATCGTGCTGCCAGGGATGGTGGAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS GCA 90 bp | CCAATGCCATCGGTGGCCCCACTGATGACCGCCCATCTTCCATACTaGTTGATCAGGTCGGGCCTGCTCCCCAGGCGAGGGATGAAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: PMPSVAPLMTAHLPY*LIRSGLLPRRGMKC Trigger: GCACTTCATCCCTCGCCTGGGGAGCAGGCCCGACCTGATCAAGCAGTATGGAAGATGGGCGGTCATCAGTGGGGCCACCGATGGCATTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036049.6 ENSMUST00000212065.2 ENSMUST00000212517.2 |
||
| CDS TCA 90 bp | CTCTCAGGGCTTCTCGGATGGGGGCGTAAATCTCCCGGCCTCTGCTaGAGTCTGCCACCAGGACAAGCGTCTCTACCCTGTAGGTGTCGG | + |
|
Preference number: 5 (lower is better) Translates to: LSGLLGWGRKSPGLC*SLPPGQASLPCRCR Trigger: CCGACACCTACAGGGTAGAGACGCTTGTCCTGGTGGCAGACTTCAGCAGAGGCCGGGAGATTTACGCCCCCATCCGAGAAGCCCTGAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS CCA 90 bp | GAAGTGGTCCAGATAGGCCTTGGACGCAGAGAAGGCAGCCAGCTGTaGGGTGGGCTTGCAGCAGGAACCAGAAGACACGGTGACGATGGC | + |
|
Preference number: 5 (lower is better) Translates to: EVVQIGLGRREGSQL*GGLAAGTRRHGDDG Trigger: GCCATCGTCACCGTGTCTTCTGGTTCCTGCTGCAAGCCCACCCCACAGCTGGCTGCCTTCTCTGCGTCCAAGGCCTATCTGGACCACTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS GCA 90 bp | GGCTTCTCGGATGGGGGCGTAAATCTCCCGGCCTCTGCTGAAGTCTaGCACCAGGACAAGCGTCTCTACCCTGTAGGTGTCGGCTATGTG | + |
|
Preference number: 5 (lower is better) Translates to: GFSDGGVNLPASAEV*HQDKRLYPVGVGYV Trigger: CACATAGCCGACACCTACAGGGTAGAGACGCTTGTCCTGGTGGCAGACTTCAGCAGAGGCCGGGAGATTTACGCCCCCATCCGAGAAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
||
| CDS CCA 90 bp | GTGTCGGCTATGTGCTTGGCCGCGGCCTGCAGCTTCTCCTCTTCCTaGCTGATCAGGATGACATTGAGTCCGTGGCTCGCTAACTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: VSAMCLAAACSFSSS*LIRMTLSPWLANSS Trigger: GGAGGAGTTAGCGAGCCACGGACTCAATGTCATCCTGATCAGCCAGGAAGAGGAGAAGCTGCAGGCCGCGGCCAAGCACATAGCCGACAC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036049.6 ENSMUST00000212065.2 ENSMUST00000212517.2 |
||
| CDS-3UTR CAA 90 bp | CCCAGGCACAGCGCAGCACCACAAGGGGCAACGCCACATCCTCCACTCTGCACAAGCCTGTGGTCCTTTTaGAAATGCCCAGGGTCGACA | + |
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Preference number: 5 (lower is better) Translates to: PRHSAAPQGATPHPPLCTSLWSF*KCPGST Trigger: TGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCT...TGTGCAGAGTGGAGGATGTGGCGTTGCCCCTTGTGGTGCTGCGCTGTGCCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| CDS TCA 90 bp | TGTTCACGTTCACGATGTCCCAGAGCGTGTCCTCGGGCACCTGGCTaGAATACTGAGGGTAGGGGTAGAATGCACCCACGTCGTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: CSRSRCPRACPRAPG*NTEGRGRMHPRRSP Trigger: TGGTGAACGACGTGGGTGCATTCTACCCCTACCCTCAGTATTTCAGCCAGGTGCCCGAGGACACGCTCTGGGACATCGTGAACGTGAACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 90 bp | AATACTGAGGGTAGGGGTAGAATGCACCCACGTCGTTCACCAGGATaGCAATGTCTCTGTCTCTCAGGGCTTCTCGGATGGGGGCGTAAA | + |
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Preference number: 5 (lower is better) Translates to: NTEGRGRMHPRRSPG*QCLCLSGLLGWGRK Trigger: TTTACGCCCCCATCCGAGAAGCCCTGAGAGACAGAGACATTGGCATCCTGGTGAACGACGTGGGTGCATTCTACCCCTACCCTCAGTATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 90 bp | GGAACTGAATGGAATGGGACCAGTAGCCTGTGGTCCTTTTTGAAATaGCCAGGGTCGACACTGCATGCTGTGCATACACTCTCGGCGACG | + |
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Preference number: 5 (lower is better) Translates to: GTEWNGTSSLWSFLK*PGSTLHAVHTLSAT Trigger: CGTCGCCGAGAGTGTATGCACAGCATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCCATTCCATTCAGTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS CCA 90 bp | AGGCTCCCACCAAGGCCAAGGCTTCCATGTAGCAATTGCAAGACCTaGCGATTTCCCTGTACAAGAGGTAGAAGCTGTCAACAGCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: RLPPRPRLPCSNCKT*RFPCTRGRSCQQQP Trigger: TGGCTGCTGTTGACAGCTTCTACCTCTTGTACAGGGAAATCGCCAGGTCTTGCAATTGCTACATGGAAGCCTTGGCCTTGGTGGGAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| CDS TCA 90 bp | GAAGAGGAACTGAATGGAATGGGACCAGTAGCCTGTGGTCCTTTTTaGAATGCCCAGGGTCGACACTGCATGCTGTGCATACACTCTCGG | + |
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Preference number: 5 (lower is better) Translates to: EEELNGMGPVACGPF*NAQGRHCMLCIHSR Trigger: CCGAGAGTGTATGCACAGCATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCCATTCCATTCAGTTCCTCTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 90 bp | CTGTGTACCAGGCTCCCACCAAGGCCAAGGCTTCCATGTAGCAATTaGAAGACCTGGCGATTTCCCTGTACAAGAGGTAGAAGCTGTCAA | + |
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Preference number: 5 (lower is better) Translates to: LCTRLPPRPRLPCSN*KTWRFPCTRGRSCQ Trigger: TTGACAGCTTCTACCTCTTGTACAGGGAAATCGCCAGGTCTTGCAATTGCTACATGGAAGCCTTGGCCTTGGTGGGAGCCTGGTACACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| CDS-3UTR CAA 90 bp | CACGCACAAAAGCTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTCATCTTCCATACTGCTaGATCAGGTCGGGCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: HAQKLPIFQPLFHKHVMIHLPYC*IRSGLL Trigger: GAGCAGGCCCGACCTGATCAAGCAGTATGGAAGATG...AATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAGCTTTTGTGCGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS-3UTR CAA 90 bp | TACGTAAAGGACCCTCACGCTAATAAAAGCATTCCCTACAATGTACACATTCATCATCTTCCATACTGCTaGATCAGGTCGGGCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: YVKDPHANKSIPYNVHIHHLPYC*IRSGLL Trigger: GAGCAGGCCCGACCTGATCAAGCAGTATGGAAGATG...ATGAATGTGTACATTGTAGGGAATGCTTTTATTAGCGTGAGGGTCCTTTACGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS-3UTR CAA 90 bp | CTGCCCATATTTCAACCACTATTCCACAAACACGTGATGATTTTATCAACAACGAGCCTGTGGTCCTTTTaGAAATGCCCAGGGTCGACA | + |
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Preference number: 5 (lower is better) Translates to: LPIFQPLFHKHVMILSTTSLWSF*KCPGST Trigger: TGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCT...CGTTGTTGATAAAATCATCACGTGTTTGTGGAATAGTGGTTGAAATATGGGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 72 bp | TACACTCTCGGCGACGGCGCCAGCCACGGGCATCTGTaGAGGAAGCTGGCGGGCGCAGCCCCGCTGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: YTLGDGASHGHL*RKLAGAAPLLV Trigger: GACCAGCAGCGGGGCTGCGCCCGCCAGCTTCCTGCACAGATGCCCGTGGCTGGCGCCGTCGCCGAGAGTGTA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS CCA 72 bp | GCGACGGCGCCAGCCACGGGCATCTGTGCAGGAAGCTaGCGGGCGCAGCCCCGCTGCTGGTCACGTAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: ATAPATGICAGS*RAQPRCWSRRR Trigger: CCTTCTACGTGACCAGCAGCGGGGCTGCGCCCGCCAGCTTCCTGCACAGATGCCCGTGGCTGGCGCCGTCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 72 bp | TCGGTGGCCCCACTGATGACCGCCCATCTTCCATACTaGTTGATCAGGTCGGGCCTGCTCCCCAGGCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: SVAPLMTAHLPY*LIRSGLLPRRG Trigger: CCCTCGCCTGGGGAGCAGGCCCGACCTGATCAAGCAGTATGGAAGATGGGCGGTCATCAGTGGGGCCACCGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036049.6 ENSMUST00000212065.2 ENSMUST00000212517.2 |
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| CDS CAA 72 bp | GTGGCCCCACTGATGACCGCCCATCTTCCATACTGCTaGATCAGGTCGGGCCTGCTCCCCAGGCGAGGGATG | + |
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Preference number: 6 (lower is better) Translates to: VAPLMTAHLPYC*IRSGLLPRRGM Trigger: CATCCCTCGCCTGGGGAGCAGGCCCGACCTGATCAAGCAGTATGGAAGATGGGCGGTCATCAGTGGGGCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036049.6 ENSMUST00000212065.2 ENSMUST00000212517.2 |
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| CDS CAA 90 bp | ATGCCATCGGTGGCCCCACTGATGACCGCCCATCTTCCATACTGCTaGATCAGGTCGGGCCTGCTCCCCAGGCGAGGGATGAAGTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: MPSVAPLMTAHLPYC*IRSGLLPRRGMKCS Trigger: GCTGCACTTCATCCCTCGCCTGGGGAGCAGGCCCGACCTGATCAAGCAGTATGGAAGATGGGCGGTCATCAGTGGGGCCACCGATGGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036049.6 ENSMUST00000212065.2 ENSMUST00000212517.2 |
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| CDS GCA 72 bp | CCCTGGCAGCACGATGTGCACCATCAGGCTGGCGGCTaGGATGTTCACGTTCACGATGTCCCAGAGCGTGTC | + |
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Preference number: 6 (lower is better) Translates to: PWQHDVHHQAGG*DVHVHDVPERV Trigger: GACACGCTCTGGGACATCGTGAACGTGAACATCGCAGCCGCCAGCCTGATGGTGCACATCGTGCTGCCAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS CCA 72 bp | CCACCATCCCTGGCAGCACGATGTGCACCATCAGGCTaGCGGCTGCGATGTTCACGTTCACGATGTCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: PPSLAARCAPSG*RLRCSRSRCPR Trigger: TCTGGGACATCGTGAACGTGAACATCGCAGCCGCCAGCCTGATGGTGCACATCGTGCTGCCAGGGATGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS TCA 72 bp | CTTGGCAGGATAAGGCCTCTTTCCGTAAGGAGCGGTTaGGGAGGTTTGCACCCCACACCCAGAGCCACTCGG | + |
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Preference number: 6 (lower is better) Translates to: LGRIRPLSVRSG*GGLHPTPRATR Trigger: CCGAGTGGCTCTGGGTGTGGGGTGCAAACCTCCTCAACCGCTCCTTACGGAAAGAGGCCTTATCCTGCCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 72 bp | GTGGTCCTTTTTGAAATGCCCAGGGTCGACACTGCATaGTGTGCATACACTCTCGGCGACGGCGCCAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: VVLFEMPRVDTA*CAYTLGDGASH Trigger: GTGGCTGGCGCCGTCGCCGAGAGTGTATGCACAGCATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS CCA 72 bp | ATGTGCTTGGCCGCGGCCTGCAGCTTCTCCTCTTCCTaGCTGATCAGGATGACATTGAGTCCGTGGCTCGCT | + |
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Preference number: 6 (lower is better) Translates to: MCLAAACSFSSS*LIRMTLSPWLA Trigger: AGCGAGCCACGGACTCAATGTCATCCTGATCAGCCAGGAAGAGGAGAAGCTGCAGGCCGCGGCCAAGCACAT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036049.6 ENSMUST00000212065.2 ENSMUST00000212517.2 |
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| CDS CAA 72 bp | GCTTGGCAGGATAAGGCCTCTTTCCGTAAGGAGCGGTaGAGGAGGTTTGCACCCCACACCCAGAGCCACTCG | + |
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Preference number: 6 (lower is better) Translates to: AWQDKASFRKER*RRFAPHTQSHS Trigger: CGAGTGGCTCTGGGTGTGGGGTGCAAACCTCCTCAACCGCTCCTTACGGAAAGAGGCCTTATCCTGCCAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS TCA 72 bp | TCACGATGTCCCAGAGCGTGTCCTCGGGCACCTGGCTaGAATACTGAGGGTAGGGGTAGAATGCACCCACGT | + |
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Preference number: 6 (lower is better) Translates to: SRCPRACPRAPG*NTEGRGRMHPR Trigger: ACGTGGGTGCATTCTACCCCTACCCTCAGTATTTCAGCCAGGTGCCCGAGGACACGCTCTGGGACATCGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 72 bp | GGTAGGGGTAGAATGCACCCACGTCGTTCACCAGGATaGCAATGTCTCTGTCTCTCAGGGCTTCTCGGATGG | + |
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Preference number: 6 (lower is better) Translates to: GRGRMHPRRSPG*QCLCLSGLLGW Trigger: CCATCCGAGAAGCCCTGAGAGACAGAGACATTGGCATCCTGGTGAACGACGTGGGTGCATTCTACCCCTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 72 bp | TGCACCCCACACCCAGAGCCACTCGGGCATATACTGTaGGAAGAGGAACTGAATGGAATGGGACCAGTAGCC | + |
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Preference number: 6 (lower is better) Translates to: CTPHPEPLGHIL*EEELNGMGPVA Trigger: GGCTACTGGTCCCATTCCATTCAGTTCCTCTTCGCACAGTATATGCCCGAGTGGCTCTGGGTGTGGGGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS GCA 72 bp | AGGCTCCCACCAAGGCCAAGGCTTCCATGTAGCAATTaGAAGACCTGGCGATTTCCCTGTACAAGAGGTAGA | + |
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Preference number: 6 (lower is better) Translates to: RLPPRPRLPCSN*KTWRFPCTRGR Trigger: TCTACCTCTTGTACAGGGAAATCGCCAGGTCTTGCAATTGCTACATGGAAGCCTTGGCCTTGGTGGGAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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| CDS GCA 72 bp | TGGAATGGGACCAGTAGCCTGTGGTCCTTTTTGAAATaGCCAGGGTCGACACTGCATGCTGTGCATACACTC | + |
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Preference number: 6 (lower is better) Translates to: WNGTSSLWSFLK*PGSTLHAVHTL Trigger: GAGTGTATGCACAGCATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCCATTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS CAA 90 bp | CGAAGAGGAACTGAATGGAATGGGACCAGTAGCCTGTGGTCCTTTTaGAAATGCCCAGGGTCGACACTGCATGCTGTGCATACACTCTCG | + |
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Preference number: 6 (lower is better) Translates to: RRGTEWNGTSSLWSF*KCPGSTLHAVHTLS Trigger: CGAGAGTGTATGCACAGCATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCCATTCCATTCAGTTCCTCTTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS TCA 72 bp | CTGAATGGAATGGGACCAGTAGCCTGTGGTCCTTTTTaGAATGCCCAGGGTCGACACTGCATGCTGTGCATA | + |
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Preference number: 6 (lower is better) Translates to: LNGMGPVACGPF*NAQGRHCMLCI Trigger: TATGCACAGCATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCCATTCCATTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS CAA 72 bp | ACTGAATGGAATGGGACCAGTAGCCTGTGGTCCTTTTaGAAATGCCCAGGGTCGACACTGCATGCTGTGCAT | + |
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Preference number: 6 (lower is better) Translates to: TEWNGTSSLWSF*KCPGSTLHAVH Trigger: ATGCACAGCATGCAGTGTCGACCCTGGGCATTTCAAAAAGGACCACAGGCTACTGGTCCCATTCCATTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036049.6 ENSMUST00000212517.2 |
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| CDS CCA 72 bp | CCAAGGCCAAGGCTTCCATGTAGCAATTGCAAGACCTaGCGATTTCCCTGTACAAGAGGTAGAAGCTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: PRPRLPCSNCKT*RFPCTRGRSCQ Trigger: TTGACAGCTTCTACCTCTTGTACAGGGAAATCGCCAGGTCTTGCAATTGCTACATGGAAGCCTTGGCCTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036049.6 |
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