Pregenerated sensors for HSD3B9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090817Ensembl transcript IDs: ENSMUST00000167753.8, ENSMUST00000188356.3
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTaGGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCAATGGAG | + |
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Preference number: 5 (lower is better) Translates to: LGDFLGSCRLLAARM*AQAALPTYTGLAME Trigger: CTCCATTGCCAACCCAGTGTATGTGGGCAATGCAGCCTGGGCTCACATTCTGGCTGCCAGGAGCCTACAGGACCCTAAGAAGTCCCCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167753.8 |
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| CDS GCA 72 bp | ATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTaGAGCTTGGACAATTCCTCTTCCTGTTTTCGACCG | + |
|
Preference number: 6 (lower is better) Translates to: MSPFSAVTLAFV*SLDNSSSCFRP Trigger: CGGTCGAAAACAGGAAGAGGAATTGTCCAAGCTGCAGACAAAGGCCAAGGTGACAGCACTGAAGGGAGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167753.8 ENSMUST00000188356.3 |
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| CDS CAA 90 bp | ACTGGGTTGGCAATGGAGAATGTGGCATCTTTCTTAATTATGCTGTaGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: TGLAMENVASFLIML*FFSAVFTVVEVTWH Trigger: ATGCCAAGTCACTTCAACCACTGTGAAAACAGCACTGAAGAACAACAGCATAATTAAGAAAGATGCCACATTCTCCATTGCCAACCCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167753.8 |
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| CDS CAA 72 bp | GCAATGGAGAATGTGGCATCTTTCTTAATTATGCTGTaGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: AMENVASFLIML*FFSAVFTVVEV Trigger: CACTTCAACCACTGTGAAAACAGCACTGAAGAACAACAGCATAATTAAGAAAGATGCCACATTCTCCATTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167753.8 |
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