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Pregenerated sensors for HSD3B8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095388

Ensembl transcript IDs: ENSMUST00000058728.10, ENSMUST00000178221.4, ENSMUST00000186215.7

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTaGGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAG +
Preference number: 5 (lower is better)
Translates to: LGDFLGSCRLLAARM*AQAALPTYTGLAME
Trigger: CTCCATCGCCAACCCAGTGTATGTGGGCAATGCAGCCTGGGCTCACATTCTGGCTGCCAGGAGCCTACAGGACCCTAAGAAGTCCCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS TCA 90 bp CCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATaGATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCT +
Preference number: 5 (lower is better)
Translates to: PCRNLVQPQALSCCR*MLARWLPHKHPVGA
Trigger: AGCTCCTACTGGATGCTTGTGTGGAAGCCAACGTGCCAACATTCATCTACAGCAGCTCAGTGCTTGTGGCTGGACCAAATTCCTACAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS TCA 90 bp ATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTaGGTACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCG +
Preference number: 5 (lower is better)
Translates to: MNVGTLASTQASSRS*VPFRLTSRMVCLEA
Trigger: CGCTTCCAGACAGACCATCCTAGATGTCAATCTGAAAGGTACTCAGCTCCTACTGGATGCTTGTGTGGAAGCCAACGTGCCAACATTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS TCA 72 bp TTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTaGGCCCAGGCTGCATTGCCCACATACACTGGGTTG +
Preference number: 6 (lower is better)
Translates to: FLGSCRLLAARM*AQAALPTYTGL
Trigger: CAACCCAGTGTATGTGGGCAATGCAGCCTGGGCTCACATTCTGGCTGCCAGGAGCCTACAGGACCCTAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS GCA 72 bp TTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTaGAGCTCTTCCTCCTGCACCAACATTCGGACAATC +
Preference number: 6 (lower is better)
Translates to: FRPKVLNRALIS*SSSSCTNIRTI
Trigger: GATTGTCCGAATGTTGGTGCAGGAGGAAGAGCTGCAGGAGATCAGAGCCCTGTTCAGGACCTTCGGTCGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS TCA 72 bp GGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTaGGTACCTTTCAGATTGACATCTAGGATGGTCTGT +
Preference number: 6 (lower is better)
Translates to: GTLASTQASSRS*VPFRLTSRMVC
Trigger: ACAGACCATCCTAGATGTCAATCTGAAAGGTACTCAGCTCCTACTGGATGCTTGTGTGGAAGCCAACGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS CAA 72 bp CCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTaGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTC +
Preference number: 6 (lower is better)
Translates to: PFSTVTLVFVCS*DNSSSCFRPKV
Trigger: GACCTTCGGTCGAAAACAGGAAGAGGAATTGTCCAAGCTGCAGACAAAGACCAAGGTGACAGTACTGAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS GCA 72 bp ATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTaGAGCTTGGACAATTCCTCTTCCTGTTTTCGACCG +
Preference number: 6 (lower is better)
Translates to: MSPFSTVTLVFV*SLDNSSSCFRP
Trigger: CGGTCGAAAACAGGAAGAGGAATTGTCCAAGCTGCAGACAAAGACCAAGGTGACAGTACTGAAGGGAGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS TCA 72 bp TATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTaGAGTGACTTGGCATTCTTCCCCATAGATGAAAGA +
Preference number: 6 (lower is better)
Translates to: YAVVLQCCFHSG*SDLAFFPIDER
Trigger: TCTTTCATCTATGGGGAAGAATGCCAAGTCACTTCAACCACTGTGAAAACAGCACTGAAGAACAACAGCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7
CDS CAA 72 bp GCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTaGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTG +
Preference number: 6 (lower is better)
Translates to: AMENVAFFLIML*FFSAVFTVVEV
Trigger: CACTTCAACCACTGTGAAAACAGCACTGAAGAACAACAGCATAATTAAGAAAAATGCCACATTCTCCATCGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058728.10
ENSMUST00000178221.4
ENSMUST00000186215.7