Pregenerated sensors for HSD3B4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095143

Ensembl transcript IDs: ENSMUST00000179429.6, ENSMUST00000196861.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	AACCTACAAGAGGTTCCAGGCAACTCACTATCAGCCACCTATCCTTaGGTCACAGCAGCTGAGGCACATCTTGTGCATTGCTGGACAAGT	+
Preference number: 1 (lower is better) Translates to: NLQEVPGNSLSATYP*VTAAEAHLVHCWTS Trigger: ACTTGTCCAGCAATGCACAAGATGTGCCTCAGCTGCTGTGACCCAAGGATAGGTGGCTGATAGTGAGTTGCCTGGAACCTCTTGTAGGTT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR CCA 90 bp	ACTGGGCCAGTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTaGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATTGTTTCTA	+
Preference number: 1 (lower is better) Translates to: TGPVTCKASGDPKTS*TECKMELLRVGLFL Trigger: TAGAAACAATCCAACTCTTAACAATTCCATTTTACACTCTGTCCAACTTGTCTTTGGGTCACCAGAAGCCTTGCAAGTCACTGGCCCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR GCA 90 bp	TTCTTTGAGCTTCATAAAGGTATGGGAATTTTCTCAGACACGAAATaGGTTGGCACATGGAAAGGAGATGAGGAAGCCCTGATGAAATTC	+
Preference number: 1 (lower is better) Translates to: FFELHKGMGIFSDTK*VGTWKGDEEALMKF Trigger: GAATTTCATCAGGGCTTCCTCATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAGAAAATTCCCATACCTTTATGAAGCTCAAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR-3UTR CCA 90 bp	GGAATTTTCTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATGAGGAAGCCTCAGCCACCTATCCTTaGGTCACAGCAGCTGAGGCA	+
Preference number: 2 (lower is better) Translates to: GIFSDTKCVGTWKGDEEASATYP*VTAAEA Trigger: TGCCTCAGCTGCTGTGACCCAAGGATAGGTGGCTGA...GGCTTCCTCATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAGAAAATTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR-3UTR TCA 90 bp	AAAGGTATGGGAATTTTCTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATTTGGGTCACAGCAGCTaGGGCACATCTTGTGCATTG	+
Preference number: 2 (lower is better) Translates to: KGMGIFSDTKCVGTWKGDLGHSS*GTSCAL Trigger: CAATGCACAAGATGTGCCTCAGCTGCTGTGACCCAA...ATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAGAAAATTCCCATACCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR CAA 90 bp	AAGACAAGTTGGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATaGTTTCTAAGTCCCTTTCTGGAGGACCTAATAACACCCAGGGCC	+
Preference number: 2 (lower is better) Translates to: KTSWTECKMELLRVG*FLSPFLEDLITPRA Trigger: GGCCCTGGGTGTTATTAGGTCCTCCAGAAAGGGACTTAGAAACAATCCAACTCTTAACAATTCCATTTTACACTCTGTCCAACTTGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR CAA 90 bp	GCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATaGTTAAGAGTTGGATTGTTTCTAAGTCCCTTTCTGGAGGACCTA	+
Preference number: 2 (lower is better) Translates to: ASGDPKTSWTECKME*LRVGLFLSPFLEDL Trigger: TAGGTCCTCCAGAAAGGGACTTAGAAACAATCCAACTCTTAACAATTCCATTTTACACTCTGTCCAACTTGTCTTTGGGTCACCAGAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR-3UTR CCA 90 bp	GGAATTTTCTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATGAGGAAGCCGGAATTGTTAAGAGTTaGATTGTTTCTAAGTCCCTT	+
Preference number: 2 (lower is better) Translates to: GIFSDTKCVGTWKGDEEAGIVKS*IVSKSL Trigger: AAGGGACTTAGAAACAATCCAACTCTTAACAATTCC...GGCTTCCTCATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAGAAAATTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR CCA 72 bp	GAGGTTCCAGGCAACTCACTATCAGCCACCTATCCTTaGGTCACAGCAGCTGAGGCACATCTTGTGCATTGC	+
Preference number: 3 (lower is better) Translates to: EVPGNSLSATYP*VTAAEAHLVHC Trigger: GCAATGCACAAGATGTGCCTCAGCTGCTGTGACCCAAGGATAGGTGGCTGATAGTGAGTTGCCTGGAACCTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR GCA 72 bp	CCTATCCTTGGGTCACAGCAGCTGAGGCACATCTTGTaGATTGCTGGACAAGTGCTTAGAGCTGAAGGGTTG	+
Preference number: 3 (lower is better) Translates to: PILGSQQLRHIL*IAGQVLRAEGL Trigger: CAACCCTTCAGCTCTAAGCACTTGTCCAGCAATGCACAAGATGTGCCTCAGCTGCTGTGACCCAAGGATAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR TCA 72 bp	CAAGTGCTTAGAGCTGAAGGGTTGCAACTGGGCCAGTaGCTTGCAAGGCTTCTGGTGACCCAAAGACAAGTT	+
Preference number: 3 (lower is better) Translates to: QVLRAEGLQLGQ*LARLLVTQRQV Trigger: AACTTGTCTTTGGGTCACCAGAAGCCTTGCAAGTCACTGGCCCAGTTGCAACCCTTCAGCTCTAAGCACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR TCA 72 bp	CTCACTATCAGCCACCTATCCTTGGGTCACAGCAGCTaGGGCACATCTTGTGCATTGCTGGACAAGTGCTTA	+
Preference number: 3 (lower is better) Translates to: LTISHLSLGHSS*GTSCALLDKCL Trigger: TAAGCACTTGTCCAGCAATGCACAAGATGTGCCTCAGCTGCTGTGACCCAAGGATAGGTGGCTGATAGTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR TCA 72 bp	CTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATaGGGAAGCCCTGATGAAATTCTAACCTACAAGAGG	+
Preference number: 3 (lower is better) Translates to: LRHEMRWHMERR*GSPDEILTYKR Trigger: CCTCTTGTAGGTTAGAATTTCATCAGGGCTTCCTCATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR GCA 72 bp	CTTCATAAAGGTATGGGAATTTTCTCAGACACGAAATaGGTTGGCACATGGAAAGGAGATGAGGAAGCCCTG	+
Preference number: 3 (lower is better) Translates to: LHKGMGIFSDTK*VGTWKGDEEAL Trigger: CAGGGCTTCCTCATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAGAAAATTCCCATACCTTTATGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR CCA 72 bp	GTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTaGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGA	+
Preference number: 3 (lower is better) Translates to: VTCKASGDPKTS*TECKMELLRVG Trigger: TCCAACTCTTAACAATTCCATTTTACACTCTGTCCAACTTGTCTTTGGGTCACCAGAAGCCTTGCAAGTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR-3UTR CAA 90 bp	GGTATGGGAATTTTCTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATGAGTTGTTAAGAGTTGGATaGTTTCTAAGTCCCTTTCTG	+
Preference number: 3 (lower is better) Translates to: GMGIFSDTKCVGTWKGDELLRVG*FLSPFL Trigger: CAGAAAGGGACTTAGAAACAATCCAACTCTTAACAA...CTCATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAGAAAATTCCCATACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR-3UTR CAA 90 bp	AAAGGTATGGGAATTTTCTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATTTGTTAAGAGTTGGATaGTTTCTAAGTCCCTTTCTG	+
Preference number: 3 (lower is better) Translates to: KGMGIFSDTKCVGTWKGDLLRVG*FLSPFL Trigger: CAGAAAGGGACTTAGAAACAATCCAACTCTTAACAA...ATCTCCTTTCCATGTGCCAACGCATTTCGTGTCTGAGAAAATTCCCATACCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
3UTR CAA 72 bp	CCACCTATCCTTGGGTCACAGCAGCTGAGGCACATCTaGTGCATTGCTGGACAAGTGCTTAGAGCTGAAGGG	+
Preference number: 4 (lower is better) Translates to: PPILGSQQLRHI*CIAGQVLRAEG Trigger: CCCTTCAGCTCTAAGCACTTGTCCAGCAATGCACAAGATGTGCCTCAGCTGCTGTGACCCAAGGATAGGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
CDS GCA 90 bp	TCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTaGAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCA	+
Preference number: 5 (lower is better) Translates to: SSCFRPKVLNRALIS*SSSSCTNIRTILWP Trigger: TGGCCAGAGGATTGTCCGAATGTTGGTGCAGGAGGAAGAGCTGCAGGAGATCAGAGCCCTGTTCAGGACCTTCGGTCGAAAACAGGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2
CDS CAA 90 bp	ACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTaGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCAT	+
Preference number: 6 (lower is better) Translates to: TGLAMENVAFFLIML*FFSAVFTVVEVTWH Trigger: ATGCCAAGTCACTTCAACCACTGTGAAAACAGCACTGAAGAACAACAGCATAATTAAGAAAAATGCCACATTCTCCATCGCCAACCCAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179429.6 ENSMUST00000196861.2