Pregenerated sensors for HSD3B1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027871Ensembl transcript IDs: ENSMUST00000029465.10, ENSMUST00000107016.10
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGGGAGACAGCAGGACCTaGCTTGTGCCTCTGTACTTG | + |
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Preference number: 2 (lower is better) Translates to: LVTGKASGDLRKIPSWSLGDSRT*LVPLYL Trigger: CAAGTACAGAGGCACAAGCCAGGTCCTGCTGTCTCC...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR CAA 90 bp | AGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCTTCTGGTGACTaGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCA | + |
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Preference number: 2 (lower is better) Translates to: SKFVSGLVTGKASGD*RKIPSWSLCLQETA Trigger: TGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAACCCACTCACAAACTTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR-3UTR CCA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGAGACAGCAGGACCTaGCTTGTGCCTCTGTACTTG | + |
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Preference number: 2 (lower is better) Translates to: ASESNGILPKARYDLGLEGDSRT*LVPLYL Trigger: CAAGTACAGAGGCACAAGCCAGGTCCTGCTGTCTCC...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR-3UTR CCA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAAAGCAAGTTTGTGAGTaGGTTAGTGACTGGCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: ASESNGILPKARYDLGLEKQVCE*VSDWQG Trigger: GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTT...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR-3UTR TCA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGTAAATTGTAATTGCTaGAGCCTAAGAACTGAGACT | + |
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Preference number: 2 (lower is better) Translates to: ASESNGILPKARYDLGLEVNCNC*SLRTET Trigger: AGTCTCAGTTCTTAGGCTTCAGCAATTACAATTTAC...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR-3UTR CAA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGACAGCAGGACCTGGCTaGTGCCTCTGTACTTGCTAC | + |
|
Preference number: 3 (lower is better) Translates to: LVTGKASGDLRKIPSWSLTAGPG*CLCTCY Trigger: GTAGCAAGTACAGAGGCACAAGCCAGGTCCTGCTGT...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR TCA 72 bp | GTTTGTGAGTGGGTTAGTGACTGGCAAGGCTTCTGGTaGCTTGAGAAAGATACCAAGTTGGTCTCTGTGTCT | + |
|
Preference number: 3 (lower is better) Translates to: VCEWVSDWQGFW*LEKDTKLVSVS Trigger: AGACACAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAACCCACTCACAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR-3UTR CAA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAACAGCAGGACCTGGCTaGTGCCTCTGTACTTGCTAC | + |
|
Preference number: 3 (lower is better) Translates to: ASESNGILPKARYDLGLETAGPG*CLCTCY Trigger: GTAGCAAGTACAGAGGCACAAGCCAGGTCCTGCTGT...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR-3UTR CAA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGAGAAAGATACCAAGTaGGTCTCTGTGTCTACAGGA | + |
|
Preference number: 3 (lower is better) Translates to: ASESNGILPKARYDLGLEEKDTK*VSVSTG Trigger: TCCTGTAGACACAGAGACCAACTTGGTATCTTTCTC...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CCA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCACAACAGAGATGCCCTaGCAGGCTCTCCTCAGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGTTEMP*QALLRH Trigger: GTGCCTGAGGAGAGCCTGCCAGGGCATCTCTGTTGT...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCCATGCTCCCATTGGCTaGCAGTACTGCCTTCTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGHAPIG*QYCLLS Trigger: GCTGAGAAGGCAGTACTGGCAGCCAATGGGAGCATG...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCGGCTGCCAGAATGTGTaGCCAGGCCACATTTTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGGCQNV*PGHIFH Trigger: GTGGAAAATGTGGCCTGGGCACACATTCTGGCAGCC...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGGCTTGCCCACAAACCCTCCTaGTCCTGTCACCAGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: EKDTKLVSVSTGDSRTWLAHKPS*SCHQAA Trigger: AGCTGCCTGGTGACAGGAGCAGGAGGGTTTGTGGGC...AAGCCAGGTCCTGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CCA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCTCAGCATGCTCCCATTaGCTGCCAGTACTGCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGSACSH*LPVLPS Trigger: AGAAGGCAGTACTGGCAGCCAATGGGAGCATGCTGA...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | TTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGGCCAGCAGCAGTGTGGATaGCAACAGAGATGCCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LRKIPSWSLCLQETAGPGQQQCG*QQRCPG Trigger: GCCAGGGCATCTCTGTTGTCATCCACACTGCTGCTG...GCCAGGTCCTGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CCA 90 bp | AGCCTAAGAACTGAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGACAACAGAGATGCCCTaGCAGGCTCTCCTCAGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: SLRTETQLCLSLSRGLGKTTEMP*QALLRH Trigger: GTGCCTGAGGAGAGCCTGCCAGGGCATCTCTGTTGT...CTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTCAGTTCTTAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | AGCCTAAGAACTGAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGAGAGCTCTGACCTCCTaGAGTTCTTTCTCCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: SLRTETQLCLSLSRGLGKRALTS*SSFSCT Trigger: GGTGCAGGAGAAAGAACTGCAGGAGGTCAGAGCTCT...CTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTCAGTTCTTAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | GTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTCTGAGCTGCAGAAGATaGAGGCTGGCACACTTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: VTGKASGDLRKIPSWSLCLSCRR*RLAHLL Trigger: AAGCAAGTGTGCCAGCCTTCATCTTCTGCAGCTCAG...ACACAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | GTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTCCCTGCAACATCAACTaGGCTGCAGAAGATGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: VTGKASGDLRKIPSWSLCPCNIN*AAEDEG Trigger: GCCTTCATCTTCTGCAGCTCAGTTGATGTTGCAGGG...ACACAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | AGCCTAAGAACTGAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGGACCATGTGCTTTCATaGTTCTGTTCCTCGTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SLRTETQLCLSLSRGLGKDHVLS*FCSSWP Trigger: TGGCCACGAGGAACAGAATCATGAAAGCACATGGTC...CTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTCAGTTCTTAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGAGCCCACAAACCCTCCTaGTCCTGTCACCAGGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGAHKPS*SCHQAA Trigger: AGCTGCCTGGTGACAGGAGCAGGAGGGTTTGTGGGC...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCTCTCAGCCATCTTTTTaGTGTATGGGTATGGATCAG | + |
|
Preference number: 4 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGSQPSF*CMGMDQ Trigger: CTGATCCATACCCATACAGCAAAAAGATGGCTGAGA...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGACAGCAGCAGTGTGGATaGCAACAGAGATGCCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGQQQCG*QQRCPG Trigger: GCCAGGGCATCTCTGTTGTCATCCACACTGCTGCTG...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTTGCTTCCTCCCAGTTaGCAAGTGGCTCATAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: LVTGKASGDLRKIPSWSLLLPPS*QVAHSP Trigger: TGGGCTATGAGCCACTTGTCAACTGGGAGGAAGCAA...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | GAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGGCTTTGTCCCTATCCACTCTaGGGTTTTCTGCTTTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: EKDTKLVSVSTGDSRTWLCPYPL*GFLLCF Trigger: GAAGCAAAGCAGAAAACCTCAGAGTGGATAGGGACA...AAGCCAGGTCCTGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGAGAGCTCTGACCTCCTaGAGTTCTTTCTCCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: LVTGKASGDLRKIPSWSLRALTS*SSFSCT Trigger: GGTGCAGGAGAAAGAACTGCAGGAGGTCAGAGCTCT...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGACCTTGGTCTTTGTCTaGAGCTTGGAGAATTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: ETQLCLSLSRGLGKQVCETLVFV*SLENSS Trigger: GGAGGAATTCTCCAAGCTGCAGACAAAGACCAAGGT...CTCACAAACTTGCTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | TTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGGCCACTCTGAGGTTTTCTaGTTTGCTTCCTCCCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: LRKIPSWSLCLQETAGPGHSEVF*FASSQL Trigger: CAACTGGGAGGAAGCAAAGCAGAAAACCTCAGAGTG...GCCAGGTCCTGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGGCTTCACTCTGAGGTTTTCTaGTTTGCTTCCTCCCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: EKDTKLVSVSTGDSRTWLHSEVF*FASSQL Trigger: CAACTGGGAGGAAGCAAAGCAGAAAACCTCAGAGTG...AAGCCAGGTCCTGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| 3UTR CAA 72 bp | GTGAGTGGGTTAGTGACTGGCAAGGCTTCTGGTGACTaGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAG | + |
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Preference number: 4 (lower is better) Translates to: VSGLVTGKASGD*RKIPSWSLCLQ Trigger: CTGTAGACACAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAACCCACTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | GTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTTGTCCCTATCCACTCTaGGGTTTTCTGCTTTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: VTGKASGDLRKIPSWSLCCPYPL*GFLLCF Trigger: GAAGCAAAGCAGAAAACCTCAGAGTGGATAGGGACA...ACACAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGACATGCTCCCATTGGCTaGCAGTACTGCCTTCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGHAPIG*QYCLLS Trigger: GCTGAGAAGGCAGTACTGGCAGCCAATGGGAGCATG...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGCACCATTTTTCAGCATaGTCCCATTGGCTGCCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: LVTGKASGDLRKIPSWSLHHFSA*SHWLPV Trigger: TACTGGCAGCCAATGGGAGCATGCTGAAAAATGGTG...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGATCAGCATGCTCCCATTaGCTGCCAGTACTGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGSACSH*LPVLPS Trigger: AGAAGGCAGTACTGGCAGCCAATGGGAGCATGCTGA...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGCACAAGTATTCAAAGTaGCACCATTTTTCAGCATGC | + |
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Preference number: 4 (lower is better) Translates to: ETQLCLSLSRGLGKQVCEHKYSK*HHFSAC Trigger: GCATGCTGAAAAATGGTGGCACTTTGAATACTTGTG...CTCACAAACTTGCTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | AGCCTAAGAACTGAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGCACAAGTATTCAAAGTaGCACCATTTTTCAGCATGC | + |
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Preference number: 4 (lower is better) Translates to: SLRTETQLCLSLSRGLGKHKYSK*HHFSAC Trigger: GCATGCTGAAAAATGGTGGCACTTTGAATACTTGTG...CTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTCAGTTCTTAGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAACCCTGCAACATCAACTaGGCTGCAGAAGATGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: ASESNGILPKARYDLGLEPCNIN*AAEDEG Trigger: GCCTTCATCTTCTGCAGCTCAGTTGATGTTGCAGGG...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | TTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGGCTCTTGTAAGAAAAAGTaGACGTGCTATTTGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: LRKIPSWSLCLQETAGPGSCKKK*TCYLTV Trigger: CACTGTCAAATAGCACGTTCACTTTTTCTTACAAGA...GCCAGGTCCTGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGACACCATTTTTCAGCATaGTCCCATTGGCTGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGHHFSA*SHWLPV Trigger: TACTGGCAGCCAATGGGAGCATGCTGAAAAATGGTG...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGACCATGTGCTTTCATaGTTCTGTTCCTCGTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: ASESNGILPKARYDLGLEDHVLS*FCSSWP Trigger: TGGCCACGAGGAACAGAATCATGAAAGCACATGGTC...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGAATTGGCTGCCAGTACTaGCTTCTCAGCCATCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGIGCQY*LLSHLF Trigger: AAAAAGATGGCTGAGAAGGCAGTACTGGCAGCCAAT...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGGAGGGCCCTAATTATTaGATTAAAAATGAATGGACT | + |
|
Preference number: 4 (lower is better) Translates to: ETQLCLSLSRGLGKQVCEEGPNY*IKNEWT Trigger: AGTCCATTCATTTTTAATGCAATAATTAGGGCCCTC...CTCACAAACTTGCTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR TCA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTCTTGTAAGAAAAAGTaGACGTGCTATTTGACAGTG | + |
|
Preference number: 4 (lower is better) Translates to: LVTGKASGDLRKIPSWSLSCKKK*TCYLTV Trigger: CACTGTCAAATAGCACGTTCACTTTTTCTTACAAGA...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGATCTCAGCCATCTTTTTaGTGTATGGGTATGGATCAG | + |
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Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGSQPSF*CMGMDQ Trigger: CTGATCCATACCCATACAGCAAAAAGATGGCTGAGA...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR GCA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGAGAGGGCCCTAATTATTaGATTAAAAATGAATGGACT | + |
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Preference number: 4 (lower is better) Translates to: ESNGILPKARYDLGLEGGEGPNY*IKNEWT Trigger: AGTCCATTCATTTTTAATGCAATAATTAGGGCCCTC...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CCA 90 bp | GCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAATTTTCCACATATACTaGGTTGGCTATGGAGAATTT | + |
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Preference number: 4 (lower is better) Translates to: ASESNGILPKARYDLGLEIFHIY*VGYGEF Trigger: AAATTCTCCATAGCCAACCCAGTATATGTGGAAAAT...TTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTCTGAAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCTCCTGCACCAACATCTaGATGATCCTCTGGCCCACA | + |
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Preference number: 5 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGSCTNI*MILWPT Trigger: TGTGGGCCAGAGGATCATCAAGATGTTGGTGCAGGA...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCTCTGGTCGGAATACTTaGTCCAGAGCTCTGACCTCC | + |
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Preference number: 5 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGSGRNT*SRALTS Trigger: GGAGGTCAGAGCTCTGGACAAAGTATTCCGACCAGA...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | GAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTTCAGCATGCTCCCATaGGCTGCCAGTACTGCCTTC | + |
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Preference number: 5 (lower is better) Translates to: ETQLCLSLSRGLGKQVCEFSMLP*AASTAF Trigger: GAAGGCAGTACTGGCAGCCAATGGGAGCATGCTGAA...CTCACAAACTTGCTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | TTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGGCTCCTGCACCAACATCTaGATGATCCTCTGGCCCACA | + |
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Preference number: 5 (lower is better) Translates to: LRKIPSWSLCLQETAGPGSCTNI*MILWPT Trigger: TGTGGGCCAGAGGATCATCAAGATGTTGGTGCAGGA...GCCAGGTCCTGCTGTCTCCTGTAGACACAGAGACCAACTTGGTATCTTTCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | GAGACTCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTCCAACACTGTCACCTaGGTCTTTGTCTGCAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: ETQLCLSLSRGLGKQVCESNTVT*VFVCSL Trigger: CAAGCTGCAGACAAAGACCAAGGTGACAGTGTTGGA...CTCACAAACTTGCTTCCCTAAGCCCCTGCTCAGAGACAAACATAGCTGAGTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTCTGGTCGGAATACTTaGTCCAGAGCTCTGACCTCC | + |
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Preference number: 5 (lower is better) Translates to: LVTGKASGDLRKIPSWSLSGRNT*SRALTS Trigger: GGAGGTCAGAGCTCTGGACAAAGTATTCCGACCAGA...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCTTGGCTATGGAGAATTaGCCAGTAACACACAGAATA | + |
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Preference number: 5 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGLAMEN*PVTHRI Trigger: TATTCTGTGTGTTACTGGCAAATTCTCCATAGCCAA...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | CTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCAGAATACCCTTATTTTaGAGGGCCCTAATTATTGCA | + |
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Preference number: 5 (lower is better) Translates to: LSRGLGKQVCEWVSDWQGRIPLF*RALIIA Trigger: TGCAATAATTAGGGCCCTCAAAAATAAGGGTATTCT...GCCTTGCCAGTCACTAACCCACTCACAAACTTGCTTCCCTAAGCCCCTGCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | TTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTTGGCTATGGAGAATTaGCCAGTAACACACAGAATA | + |
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Preference number: 5 (lower is better) Translates to: LVTGKASGDLRKIPSWSLLAMEN*PVTHRI Trigger: TATTCTGTGTGTTACTGGCAAATTCTCCATAGCCAA...CAGAGACCAACTTGGTATCTTTCTCAAGTCACCAGAAGCCTTGCCAGTCACTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS-3UTR CAA 90 bp | GAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGAAGGGGGAAGAATACCCTTATTTTaGAGGGCCCTAATTATTGCA | + |
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Preference number: 5 (lower is better) Translates to: ESNGILPKARYDLGLEGGRIPLF*RALIIA Trigger: TGCAATAATTAGGGCCCTCAAAAATAAGGGTATTCT...TCCCCCTTCAAGTCCTAAATCATATCTTGCCTTTGGTAAAATCCCGTTGCTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS CAA 72 bp | TCCTCGTGGCCATTCAGGACGATCTTCTTGTACGAGTaGGGCCCTGCAACATCAACTGAGCTGCAGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: SSWPFRTIFLYE*GPATSTELQKM Trigger: CATCTTCTGCAGCTCAGTTGATGTTGCAGGGCCCAACTCGTACAAGAAGATCGTCCTGAATGGCCACGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS CAA 90 bp | GTCTGCAGCTTGGAGAATTCCTCCTTGGTTTCTGGTCGGAATACTTaGTCCAGAGCTCTGACCTCCTGCAGTTCTTTCTCCTGCACCAAC | + |
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Preference number: 6 (lower is better) Translates to: VCSLENSSLVSGRNT*SRALTSCSSFSCTN Trigger: GTTGGTGCAGGAGAAAGAACTGCAGGAGGTCAGAGCTCTGGACAAAGTATTCCGACCAGAAACCAAGGAGGAATTCTCCAAGCTGCAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS TCA 72 bp | CCTTGGTTTCTGGTCGGAATACTTTGTCCAGAGCTCTaGCCTCCTGCAGTTCTTTCTCCTGCACCAACATCT | + |
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Preference number: 6 (lower is better) Translates to: PWFLVGILCPEL*PPAVLSPAPTS Trigger: AGATGTTGGTGCAGGAGAAAGAACTGCAGGAGGTCAGAGCTCTGGACAAAGTATTCCGACCAGAAACCAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS CCA 72 bp | CTTTGTCTGCAGCTTGGAGAATTCCTCCTTGGTTTCTaGTCGGAATACTTTGTCCAGAGCTCTGACCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: LCLQLGEFLLGF*SEYFVQSSDLL Trigger: CAGGAGGTCAGAGCTCTGGACAAAGTATTCCGACCAGAAACCAAGGAGGAATTCTCCAAGCTGCAGACAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS GCA 72 bp | TCTGGTCGGAATACTTTGTCCAGAGCTCTGACCTCCTaGAGTTCTTTCTCCTGCACCAACATCTTGATGATC | + |
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Preference number: 6 (lower is better) Translates to: SGRNTLSRALTS*SSFSCTNILMI Trigger: GATCATCAAGATGTTGGTGCAGGAGAAAGAACTGCAGGAGGTCAGAGCTCTGGACAAAGTATTCCGACCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS CAA 72 bp | CCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTaGGAGAATTCCTCCTTGGTTTCTGGTCGGAATACT | + |
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Preference number: 6 (lower is better) Translates to: PSNTVTLVFVCS*ENSSLVSGRNT Trigger: AGTATTCCGACCAGAAACCAAGGAGGAATTCTCCAAGCTGCAGACAAAGACCAAGGTGACAGTGTTGGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS CCA 72 bp | CTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTTaGAGAATTCCTCCTTGGTTTCTGGTCGGAATACTT | + |
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Preference number: 6 (lower is better) Translates to: LPTLSPWSLSAA*RIPPWFLVGIL Trigger: AAGTATTCCGACCAGAAACCAAGGAGGAATTCTCCAAGCTGCAGACAAAGACCAAGGTGACAGTGTTGGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS CAA 72 bp | ACTTTGTGTCCAATATCTCCCTGTGCTGTTCCACTATaGTCCCTATCCACTCTGAGGTTTTCTGCTTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: TLCPISPCAVPL*SLSTLRFSALL Trigger: AAGCAAAGCAGAAAACCTCAGAGTGGATAGGGACAATAGTGGAACAGCACAGGGAGATATTGGACACAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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| CDS CAA 72 bp | GAGAATTTGCCAGTAACACACAGAATACCCTTATTTTaGAGGGCCCTAATTATTGCATTAAAAATGAATGGA | + |
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Preference number: 6 (lower is better) Translates to: ENLPVTHRIPLF*RALIIALKMNG Trigger: TCCATTCATTTTTAATGCAATAATTAGGGCCCTCAAAAATAAGGGTATTCTGTGTGTTACTGGCAAATTCTC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029465.10 ENSMUST00000107016.10 |
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