Pregenerated sensors for HSD17B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031844Ensembl transcript IDs: ENSMUST00000034304.9, ENSMUST00000212052.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGCCCTGGGTTCAATTCCCATCACGCCTATGCTCATCTCATGGCTaGAGTTGGGGACAGCTATGTCTCTTCACAGGACCTGAAAGCATC | + |
|
Preference number: 1 (lower is better) Translates to: KPWVQFPSRLCSSHG*SWGQLCLFTGPESI Trigger: GATGCTTTCAGGTCCTGTGAAGAGACATAGCTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAACCCAGGGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| 3UTR CCA 90 bp | TGGGTTCAATTCCCATCACGCCTATGCTCATCTCATGGCTGCAGTTaGGGACAGCTATGTCTCTTCACAGGACCTGAAAGCATCTCTGTT | + |
|
Preference number: 1 (lower is better) Translates to: WVQFPSRLCSSHGCS*GQLCLFTGPESISV Trigger: AACAGAGATGCTTTCAGGTCCTGTGAAGAGACATAGCTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAACCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| 3UTR TCA 72 bp | CTGCAGTTGGGGACAGCTATGTCTCTTCACAGGACCTaGAAGCATCTCTGTTCCACAGACTCAGCAGGGAGC | + |
|
Preference number: 3 (lower is better) Translates to: LQLGTAMSLHRT*KHLCSTDSAGS Trigger: GCTCCCTGCTGAGTCTGTGGAACAGAGATGCTTTCAGGTCCTGTGAAGAGACATAGCTGTCCCCAACTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| 3UTR-3UTR CAA 90 bp | GCAGCCGAGTTCTTCTCCAGCATGAAGCCCTGGGTTCAATTCCCATCACGCCTAATCTCATGGCTGCAGTaGGGGACAGCTATGTCTCTT | + |
|
Preference number: 3 (lower is better) Translates to: AAEFFSSMKPWVQFPSRLISWLQ*GTAMSL Trigger: AAGAGACATAGCTGTCCCCAACTGCAGCCATGAGAT...TAGGCGTGATGGGAATTGAACCCAGGGCTTCATGCTGGAGAAGAACTCGGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| 3UTR GCA 72 bp | AGCATGAAGCCCTGGGTTCAATTCCCATCACGCCTATaGTCATCTCATGGCTGCAGTTGGGGACAGCTATGT | + |
|
Preference number: 3 (lower is better) Translates to: SMKPWVQFPSRL*SSHGCSWGQLC Trigger: ACATAGCTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAACCCAGGGCTTCATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| 3UTR CCA 72 bp | TTCCCATCACGCCTATGCTCATCTCATGGCTGCAGTTaGGGACAGCTATGTCTCTTCACAGGACCTGAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: FPSRLCSSHGCS*GQLCLFTGPES Trigger: GCTTTCAGGTCCTGTGAAGAGACATAGCTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| 3UTR CCA 72 bp | CTGGGTTCAATTCCCATCACGCCTATGCTCATCTCATaGCTGCAGTTGGGGACAGCTATGTCTCTTCACAGG | + |
|
Preference number: 3 (lower is better) Translates to: LGSIPITPMLIS*LQLGTAMSLHR Trigger: CCTGTGAAGAGACATAGCTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAACCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| 3UTR GCA 72 bp | GTTCAATTCCCATCACGCCTATGCTCATCTCATGGCTaGAGTTGGGGACAGCTATGTCTCTTCACAGGACCT | + |
|
Preference number: 3 (lower is better) Translates to: VQFPSRLCSSHG*SWGQLCLFTGP Trigger: AGGTCCTGTGAAGAGACATAGCTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS-3UTR TCA 90 bp | TCCCATCACGCCTATGCTCATCTCATGGCTGCAGTTGGGGACAGCTATGTCTCTAACCACAGCCTCACATaGCAAGGGAGGGAAGCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: SHHAYAHLMAAVGDSYVSNHSLT*QGREAP Trigger: TGGGGCTTCCCTCCCTTGTCATGTGAGGCTGTGGTT...AGAGACATAGCTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS-3UTR CCA 90 bp | TGGGTTCAATTCCCATCACGCCTATGCTCATCTCATGGCTGCAGTTGGGGACAGAGATCTTCTGCCCCATaGCTCCTGTCACCAGCACGG | + |
|
Preference number: 4 (lower is better) Translates to: WVQFPSRLCSSHGCSWGQRSSAP*LLSPAR Trigger: CCGTGCTGGTGACAGGAGCCATGGGGCAGAAGATCT...CTGTCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS-3UTR GCA 90 bp | GCCCTGGGTTCAATTCCCATCACGCCTATGCTCATCTCATGGCTGCAGTTGGGGTTCTTCAAGATCTTCTaGCCCATGGCTCCTGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: ALGSIPITPMLISWLQLGFFKIF*PMAPVT Trigger: GGTGACAGGAGCCATGGGGCAGAAGATCTTGAAGAA...CCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAACCCAGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS-3UTR TCA 90 bp | GCTGCAGTTGGGGACAGCTATGTCTCTTCACAGGACCTGAAAGCATCTCTGTTCACCAGCACGGCCTTTTaGTCCACAGGTAACAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: AAVGDSYVSSQDLKASLFTSTAF*STGNKS Trigger: AGACTTGTTACCTGTGGATCAAAAGGCCGTGCTGGT...GAACAGAGATGCTTTCAGGTCCTGTGAAGAGACATAGCTGTCCCCAACTGCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS-3UTR CCA 90 bp | CCCTGGGTTCAATTCCCATCACGCCTATGCTCATCTCATGGCTGCAGTTGGGGAACAGGTAACAAGTCTTaGTCAGATGAACTCATATAC | + |
|
Preference number: 4 (lower is better) Translates to: PWVQFPSRLCSSHGCSWGTGNKS*SDELIY Trigger: GTATATGAGTTCATCTGACCAAGACTTGTTACCTGT...TCCCCAACTGCAGCCATGAGATGAGCATAGGCGTGATGGGAATTGAACCCAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS-3UTR TCA 90 bp | TGTCTCTTCACAGGACCTGAAAGCATCTCTGTTCCACAGACTCAGCAGGGAGCACAAGTCTTGGTCAGATaGACTCATATACAGAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: CLFTGPESISVPQTQQGAQVLVR*THIQKK Trigger: CTTCTTCTGTATATGAGTTCATCTGACCAAGACTTG...TGCTCCCTGCTGAGTCTGTGGAACAGAGATGCTTTCAGGTCCTGTGAAGAGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS TCA 90 bp | AGCAGGCCACGGATAAGAGGAACAAGGTGCAGAGGAGGGACAGACTaGGCAGGCAGGCACCTCCCCAGAGGCCAGCGAGACACACCGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SRPRIRGTRCRGGTD*AGRHLPRGQRDTPP Trigger: AGGCGGTGTGTCTCGCTGGCCTCTGGGGAGGTGCCTGCCTGCTCAGTCTGTCCCTCCTCTGCACCTTGTTCCTCTTATCCGTGGCCTGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034304.9 ENSMUST00000212052.2 |
||
| CDS TCA 90 bp | TTCAAGATCTTCTGCCCCATGGCTCCTGTCACCAGCACGGCCTTTTaGTCCACAGGTAACAAGTCTTGGTCAGATGAACTCATATACAGA | + |
|
Preference number: 5 (lower is better) Translates to: FKIFCPMAPVTSTAF*STGNKSWSDELIYR Trigger: TCTGTATATGAGTTCATCTGACCAAGACTTGTTACCTGTGGATCAAAAGGCCGTGCTGGTGACAGGAGCCATGGGGCAGAAGATCTTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS TCA 90 bp | AAAGTGGTCCAGGATTTCCTTCTCCATTTTATCCCAAATGTCCTGTaGGCCTGTGATGTTTGTTTTGAAGCCTCCGGGTTTGATGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: KVVQDFLLHFIPNVL*ACDVCFEASGFDGH Trigger: GTGACCATCAAACCCGGAGGCTTCAAAACAAACATCACAGGCTCACAGGACATTTGGGATAAAATGGAGAAGGAAATCCTGGACCACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CCA 90 bp | TCTGTGTATGGACGTAGTCCTGGCCATAGTTCTCCTGAATATCTTTaGAAAAGTGGTCCAGGATTTCCTTCTCCATTTTATCCCAAATGT | + |
|
Preference number: 5 (lower is better) Translates to: SVYGRSPGHSSPEYL*KSGPGFPSPFYPKC Trigger: ACATTTGGGATAAAATGGAGAAGGAAATCCTGGACCACTTTTCCAAAGATATTCAGGAGAACTATGGCCAGGACTACGTCCATACACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS TCA 72 bp | GTGAAACCCAGCTTGTCCAGGTGCTTGGCCAAACCGTaGCCGAAACCGGAATCAGCACCTGTCACCAGCACG | + |
|
Preference number: 6 (lower is better) Translates to: VKPSLSRCLAKP*PKPESAPVTST Trigger: CGTGCTGGTGACAGGTGCTGATTCCGGTTTCGGTCACGGTTTGGCCAAGCACCTGGACAAGCTGGGTTTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS TCA 72 bp | CCGGGCCCTCTTTGTCCAGCACTCCAGCAAACACTGTaGAACCCAGCTTGTCCAGGTGCTTGGCCAAACCGT | + |
|
Preference number: 6 (lower is better) Translates to: PGPLCPALQQTL*NPACPGAWPNR Trigger: ACGGTTTGGCCAAGCACCTGGACAAGCTGGGTTTCACAGTGTTTGCTGGAGTGCTGGACAAAGAGGGCCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 90 bp | AGTGGAACCGTGCCTCCCATGCTGCTGACGTTCACCAGCCTCCCCTaGGACTTTCTAAGTAGAGGCAGAAACGCCTTGGTGACCTCGACA | + |
|
Preference number: 6 (lower is better) Translates to: SGTVPPMLLTFTSLP*DFLSRGRNALVTST Trigger: TGTCGAGGTCACCAAGGCGTTTCTGCCTCTACTTAGAAAGTCCAAGGGGAGGCTGGTGAACGTCAGCAGCATGGGAGGCACGGTTCCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS TCA 72 bp | CAGAAATGGCATGCTGGATGTCCCGAAGCACAGGGGTaGTGTCCGGGTTGGACCTCTCTTTCAAGGTCGGGA | + |
|
Preference number: 6 (lower is better) Translates to: QKWHAGCPEAQG*CPGWTSLSRSG Trigger: TCCCGACCTTGAAAGAGAGGTCCAACCCGGACATCACCCCTGTGCTTCGGGACATCCAGCATGCCATTTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 72 bp | GTGCCTCCCATGCTGCTGACGTTCACCAGCCTCCCCTaGGACTTTCTAAGTAGAGGCAGAAACGCCTTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: VPPMLLTFTSLP*DFLSRGRNALV Trigger: CACCAAGGCGTTTCTGCCTCTACTTAGAAAGTCCAAGGGGAGGCTGGTGAACGTCAGCAGCATGGGAGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 72 bp | TGCTGGATGTCCCGAAGCACAGGGGTGATGTCCGGGTaGGACCTCTCTTTCAAGGTCGGGATGATGAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: CWMSRSTGVMSG*DLSFKVGMMSF Trigger: GAAGCTCATCATCCCGACCTTGAAAGAGAGGTCCAACCCGGACATCACCCCTGTGCTTCGGGACATCCAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS GCA 72 bp | TCTGACCCGAGAGAGCATGAAGGTGAAAATCAAAGTTaGCCTGATTCTGCCACCAAGCCCGGGAGGGTCCGA | + |
|
Preference number: 6 (lower is better) Translates to: SDPREHEGENQS*PDSATKPGRVR Trigger: TCGGACCCTCCCGGGCTTGGTGGCAGAATCAGGGCAACTTTGATTTTCACCTTCATGCTCTCTCGGGTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS CAA 90 bp | GAAATGGCATGCTGGATGTCCCGAAGCACAGGGGTGATGTCCGGGTaGGACCTCTCTTTCAAGGTCGGGATGATGAGCTTCTGTGTATGG | + |
|
Preference number: 6 (lower is better) Translates to: EMACWMSRSTGVMSG*DLSFKVGMMSFCVW Trigger: CCATACACAGAAGCTCATCATCCCGACCTTGAAAGAGAGGTCCAACCCGGACATCACCCCTGTGCTTCGGGACATCCAGCATGCCATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CCA 72 bp | TCAAGGACTGCACGTTCTTCAAGATCTTCTGCCCCATaGCTCCTGTCACCAGCACGGCCTTTTGATCCACAG | + |
|
Preference number: 6 (lower is better) Translates to: SRTARSSRSSAP*LLSPARPFDPQ Trigger: CTGTGGATCAAAAGGCCGTGCTGGTGACAGGAGCCATGGGGCAGAAGATCTTGAAGAACGTGCAGTCCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212052.2 |
||
| CDS CAA 72 bp | CTCCCCTTGGACTTTCTAAGTAGAGGCAGAAACGCCTaGGTGACCTCGACAGTTCCGAAGAAGTTCACGGCC | + |
|
Preference number: 6 (lower is better) Translates to: LPLDFLSRGRNA*VTSTVPKKFTA Trigger: GGCCGTGAACTTCTTCGGAACTGTCGAGGTCACCAAGGCGTTTCTGCCTCTACTTAGAAAGTCCAAGGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 72 bp | AGTTCCCCGTCGATAGGTAAGTGGAAGACCCCGGCATaGTTAACCACGGCCCACAGTCCTTTGTCTTGTATC | + |
|
Preference number: 6 (lower is better) Translates to: SSPSIGKWKTPA*LTTAHSPLSCI Trigger: GATACAAGACAAAGGACTGTGGGCCGTGGTTAACAATGCCGGGGTCTTCCACTTACCTATCGACGGGGAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 72 bp | CCATTCGCCCTGGGTAATAAAAGGAAGAGGGGTTCCTaGCAGAAATGGCATGCTGGATGTCCCGAAGCACAG | + |
|
Preference number: 6 (lower is better) Translates to: PFALGNKRKRGS*QKWHAGCPEAQ Trigger: CTGTGCTTCGGGACATCCAGCATGCCATTTCTGCAAGGAACCCCTCTTCCTTTTATTACCCAGGGCGAATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 90 bp | TTCACCAGCCTCCCCTTGGACTTTCTAAGTAGAGGCAGAAACGCCTaGGTGACCTCGACAGTTCCGAAGAAGTTCACGGCCATGCATTTT | + |
|
Preference number: 6 (lower is better) Translates to: FTSLPLDFLSRGRNA*VTSTVPKKFTAMHF Trigger: AAAATGCATGGCCGTGAACTTCTTCGGAACTGTCGAGGTCACCAAGGCGTTTCTGCCTCTACTTAGAAAGTCCAAGGGGAGGCTGGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS TCA 72 bp | TATCTGCTCTGGCTTGGTGACATCCATCTGGAGCACTaGAAGACGCTCAGAGCAGTGTTTTCTCAGTTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: YLLWLGDIHLEH*KTLRAVFSQFL Trigger: GAGGAACTGAGAAAACACTGCTCTGAGCGTCTTTCAGTGCTCCAGATGGATGTCACCAAGCCAGAGCAGATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS TCA 72 bp | CTTTGCTGTGAGCATCTTTTATCTGCTCTGGCTTGGTaGCATCCATCTGGAGCACTGAAAGACGCTCAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: LCCEHLLSALAW*HPSGALKDAQS Trigger: GCTCTGAGCGTCTTTCAGTGCTCCAGATGGATGTCACCAAGCCAGAGCAGATAAAAGATGCTCACAGCAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CCA 72 bp | GCATCTTTTATCTGCTCTGGCTTGGTGACATCCATCTaGAGCACTGAAAGACGCTCAGAGCAGTGTTTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: ASFICSGLVTSI*STERRSEQCFL Trigger: GAGAAAACACTGCTCTGAGCGTCTTTCAGTGCTCCAGATGGATGTCACCAAGCCAGAGCAGATAAAAGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 90 bp | CAAATGTCCTGTGAGCCTGTGATGTTTGTTTTGAAGCCTCCGGGTTaGATGGTCACAACTTTAACTCCCCATTTGTCAAGCTCCTGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: QMSCEPVMFVLKPPG*MVTTLTPHLSSSCL Trigger: CAGACAGGAGCTTGACAAATGGGGAGTTAAAGTTGTGACCATCAAACCCGGAGGCTTCAAAACAAACATCACAGGCTCACAGGACATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 72 bp | CCTCCGGGTTTGATGGTCACAACTTTAACTCCCCATTaGTCAAGCTCCTGTCTGATGATTGTTGAGAACATG | + |
|
Preference number: 6 (lower is better) Translates to: PPGLMVTTLTPH*SSSCLMIVENM Trigger: CATGTTCTCAACAATCATCAGACAGGAGCTTGACAAATGGGGAGTTAAAGTTGTGACCATCAAACCCGGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 72 bp | TGTGAGCCTGTGATGTTTGTTTTGAAGCCTCCGGGTTaGATGGTCACAACTTTAACTCCCCATTTGTCAAGC | + |
|
Preference number: 6 (lower is better) Translates to: CEPVMFVLKPPG*MVTTLTPHLSS Trigger: GCTTGACAAATGGGGAGTTAAAGTTGTGACCATCAAACCCGGAGGCTTCAAAACAAACATCACAGGCTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 90 bp | GTTTTGAAGCCTCCGGGTTTGATGGTCACAACTTTAACTCCCCATTaGTCAAGCTCCTGTCTGATGATTGTTGAGAACATGGTTAGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: VLKPPGLMVTTLTPH*SSSCLMIVENMVRA Trigger: AGCTCTAACCATGTTCTCAACAATCATCAGACAGGAGCTTGACAAATGGGGAGTTAAAGTTGTGACCATCAAACCCGGAGGCTTCAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS TCA 72 bp | CAGGATTTCCTTCTCCATTTTATCCCAAATGTCCTGTaGGCCTGTGATGTTTGTTTTGAAGCCTCCGGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: QDFLLHFIPNVL*ACDVCFEASGF Trigger: AAACCCGGAGGCTTCAAAACAAACATCACAGGCTCACAGGACATTTGGGATAAAATGGAGAAGGAAATCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CCA 72 bp | GGACGTAGTCCTGGCCATAGTTCTCCTGAATATCTTTaGAAAAGTGGTCCAGGATTTCCTTCTCCATTTTAT | + |
|
Preference number: 6 (lower is better) Translates to: GRSPGHSSPEYL*KSGPGFPSPFY Trigger: ATAAAATGGAGAAGGAAATCCTGGACCACTTTTCCAAAGATATTCAGGAGAACTATGGCCAGGACTACGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||
| CDS CAA 72 bp | TTATCCCAAATGTCCTGTGAGCCTGTGATGTTTGTTTaGAAGCCTCCGGGTTTGATGGTCACAACTTTAACT | + |
|
Preference number: 6 (lower is better) Translates to: LSQMSCEPVMFV*KPPGLMVTTLT Trigger: AGTTAAAGTTGTGACCATCAAACCCGGAGGCTTCAAAACAAACATCACAGGCTCACAGGACATTTGGGATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034304.9 |
||