Pregenerated sensors for HSD17B12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027195Ensembl transcript IDs: ENSMUST00000028619.5
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCACCCACCCCAGAAGGAGTCTGCCATCCTAGGCAAGTATCCGGGTaGAGTGCAGACACAACGAATGCTGTGTGTCCACACAGGCTGCTT | + |
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Preference number: 1 (lower is better) Translates to: PPTPEGVCHPRQVSG*SADTTNAVCPHRLL Trigger: AAGCAGCCTGTGTGGACACACAGCATTCGTTGTGTCTGCACTGCACCCGGATACTTGCCTAGGATGGCAGACTCCTTCTGGGGTGGGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR GCA 90 bp | AAAGAACATGTTTCCATGACCCCACCACCCACCCCAGAAGGAGTCTaGCATCCTAGGCAAGTATCCGGGTGCAGTGCAGACACAACGAAT | + |
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Preference number: 1 (lower is better) Translates to: KEHVSMTPPPTPEGV*HPRQVSGCSADTTN Trigger: ATTCGTTGTGTCTGCACTGCACCCGGATACTTGCCTAGGATGGCAGACTCCTTCTGGGGTGGGTGGTGGGGTCATGGAAACATGTTCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CCA 90 bp | GCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGGGCCAGATaGGTCTGTGTCTACCGCTGTCATTCTGGGATTTGTTCCTTTTTG | + |
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Preference number: 1 (lower is better) Translates to: ASRPNIMWSLALWAR*VCVYRCHSGICSFL Trigger: CAAAAAGGAACAAATCCCAGAATGACAGCGGTAGACACAGACCCATCTGGCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR-3UTR TCA 90 bp | GCTGTGTGTCCACACAGGCTGCTTTCCTGGATCCTGCGGTACCACAGGATGTTGTTACTGAGACAACAGTaGAGACTCTGGGGACAGGCA | + |
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Preference number: 2 (lower is better) Translates to: AVCPHRLLSWILRYHRMLLLRQQ*RLWGQA Trigger: TGCCTGTCCCCAGAGTCTTCACTGTTGTCTCAGTAA...CAACATCCTGTGGTACCGCAGGATCCAGGAAAGCAGCCTGTGTGGACACACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CAA 90 bp | CCACACAGGCTGCTTTCCTGGATCCTGCGGTACCACAGGATGTTGTaGGTCTTGATGTACACTTTGGCCCACTTACCTCTACATTCCGGG | + |
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Preference number: 2 (lower is better) Translates to: PHRLLSWILRYHRML*VLMYTLAHLPLHSG Trigger: CCCGGAATGTAGAGGTAAGTGGGCCAAAGTGTACATCAAGACCAACAACATCCTGTGGTACCGCAGGATCCAGGAAAGCAGCCTGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CAA 90 bp | TGTCCACACAGGCTGCTTTCCTGGATCCTGCGGTACCACAGGATGTaGTTGGTCTTGATGTACACTTTGGCCCACTTACCTCTACATTCC | + |
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Preference number: 2 (lower is better) Translates to: CPHRLLSWILRYHRM*LVLMYTLAHLPLHS Trigger: GGAATGTAGAGGTAAGTGGGCCAAAGTGTACATCAAGACCAACAACATCCTGTGGTACCGCAGGATCCAGGAAAGCAGCCTGTGTGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR-3UTR GCA 90 bp | TTTATAGTAGCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGGGCCAGACTGGGGACAGGCAGGTaGCCAGTGTATAGGCACAGG | + |
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Preference number: 2 (lower is better) Translates to: FIVASRPNIMWSLALWARLGTGR*PVYRHR Trigger: CCTGTGCCTATACACTGGGCACCTGCCTGTCCCCAG...TCTGGCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR-3UTR GCA 90 bp | AATGTGGTCATTGGCACTGTGGGCCAGATGGGTCTGTGTCTACCGCTGTCATTCAAGGAATTTGTTTTCTaGCAACTATGCCATGTTAGT | + |
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Preference number: 2 (lower is better) Translates to: NVVIGTVGQMGLCLPLSFKEFVF*QLCHVS Trigger: ACTAACATGGCATAGTTGGCAGAAAACAAATTCCTT...GAATGACAGCGGTAGACACAGACCCATCTGGCCCACAGTGCCAATGACCACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CAA 90 bp | ACTGTGGGCCAGATGGGTCTGTGTCTACCGCTGTCATTCTGGGATTaGTTCCTTTTTGTCAAAGGAACATACATTTGCCAAGAACATTTA | + |
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Preference number: 2 (lower is better) Translates to: TVGQMGLCLPLSFWD*FLFVKGTYICQEHL Trigger: TAAATGTTCTTGGCAAATGTATGTTCCTTTGACAAAAAGGAACAAATCCCAGAATGACAGCGGTAGACACAGACCCATCTGGCCCACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CAA 90 bp | AGATGGGTCTGTGTCTACCGCTGTCATTCTGGGATTTGTTCCTTTTaGTCAAAGGAACATACATTTGCCAAGAACATTTACATTAAACTT | + |
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Preference number: 2 (lower is better) Translates to: RWVCVYRCHSGICSF*SKEHTFAKNIYIKL Trigger: AAGTTTAATGTAAATGTTCTTGGCAAATGTATGTTCCTTTGACAAAAAGGAACAAATCCCAGAATGACAGCGGTAGACACAGACCCATCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR-3UTR TCA 90 bp | AATGCACTTTATAGTAGCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGCATGTTAGTAATTACTaGGACAACAGTGAAGACTCT | + |
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Preference number: 2 (lower is better) Translates to: NALYSSFQTKYNVVIGTVHVSNY*DNSEDS Trigger: AGAGTCTTCACTGTTGTCTCAGTAATTACTAACATG...CACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAAGTGCATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR GCA 72 bp | GTTTCCATGACCCCACCACCCACCCCAGAAGGAGTCTaGCATCCTAGGCAAGTATCCGGGTGCAGTGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: VSMTPPPTPEGV*HPRQVSGCSAD Trigger: GTCTGCACTGCACCCGGATACTTGCCTAGGATGGCAGACTCCTTCTGGGGTGGGTGGTGGGGTCATGGAAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR-3UTR CAA 90 bp | GCTGTGTGTCCACACAGGCTGCTTTCCTGGATCCTGCGGTACCACAGGATGTTGAATATAATGTGGTCATaGGCACTGTGGGCCAGATGG | + |
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Preference number: 3 (lower is better) Translates to: AVCPHRLLSWILRYHRMLNIMWS*ALWARW Trigger: CCATCTGGCCCACAGTGCCAATGACCACATTATATT...CAACATCCTGTGGTACCGCAGGATCCAGGAAAGCAGCCTGTGTGGACACACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CCA 72 bp | ACAACGAATGCTGTGTGTCCACACAGGCTGCTTTCCTaGATCCTGCGGTACCACAGGATGTTGTTGGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: TTNAVCPHRLLS*ILRYHRMLLVL Trigger: CAAGACCAACAACATCCTGTGGTACCGCAGGATCCAGGAAAGCAGCCTGTGTGGACACACAGCATTCGTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CCA 72 bp | CCAAATATAATGTGGTCATTGGCACTGTGGGCCAGATaGGTCTGTGTCTACCGCTGTCATTCTGGGATTTGT | + |
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Preference number: 3 (lower is better) Translates to: PNIMWSLALWAR*VCVYRCHSGIC Trigger: ACAAATCCCAGAATGACAGCGGTAGACACAGACCCATCTGGCCCACAGTGCCAATGACCACATTATATTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CCA 72 bp | GTGGGCCAGATGGGTCTGTGTCTACCGCTGTCATTCTaGGATTTGTTCCTTTTTGTCAAAGGAACATACATT | + |
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Preference number: 3 (lower is better) Translates to: VGQMGLCLPLSF*DLFLFVKGTYI Trigger: AATGTATGTTCCTTTGACAAAAAGGAACAAATCCCAGAATGACAGCGGTAGACACAGACCCATCTGGCCCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CCA 72 bp | ATGCACTTTATAGTAGCTTCCAGACCAAATATAATGTaGTCATTGGCACTGTGGGCCAGATGGGTCTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: MHFIVASRPNIM*SLALWARWVCV Trigger: GACACAGACCCATCTGGCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAAGTGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR TCA 72 bp | TTTGTTTTCTGCCAACTATGCCATGTTAGTAATTACTaGGACAACAGTGAAGACTCTGGGGACAGGCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: FVFCQLCHVSNY*DNSEDSGDRQV Trigger: CACCTGCCTGTCCCCAGAGTCTTCACTGTTGTCTCAGTAATTACTAACATGGCATAGTTGGCAGAAAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR-3UTR CAA 90 bp | GCACTTTATAGTAGCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGGGCGCCTCTAAAAGGAATTaGTTTTCTGCCAACTATGCC | + |
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Preference number: 3 (lower is better) Translates to: ALYSSFQTKYNVVIGTVGASKRN*FSANYA Trigger: GGCATAGTTGGCAGAAAACAAATTCCTTTTAGAGGC...GCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAAGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR TCA 72 bp | CATGTTTCAATTCTCTTTTTATGTCTTAGCCACCTTTaGGAAGACCAGTGCCACATAAATACGAAGCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: HVSILFLCLSHL*EDQCHINTKLG Trigger: TCCCAGCTTCGTATTTATGTGGCACTGGTCTTCTCAAAGGTGGCTAAGACATAAAAAGAGAATTGAAACATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR CCA 90 bp | GCACTTTATAGTAGCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGGGCCCCACGCACCACACCTaGAAGGCCCTGAAGAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: ALYSSFQTKYNVVIGTVGPTHHT*KALKSE Trigger: CTCGCTCTTCAGGGCCTTCCAGGTGTGGTGCGTGGG...GCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAAGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR CCA 90 bp | GCAGACACAACGAATGCTGTGTGTCCACACAGGCTGCTTTCCTGGATCCTGCGGGTAGATTGTCAACAATaGAACTGGGAGCATGCCACT | + |
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Preference number: 4 (lower is better) Translates to: ADTTNAVCPHRLLSWILRVDCQQ*NWEHAT Trigger: AGTGGCATGCTCCCAGTTCCATTGTTGACAATCTAC...CCGCAGGATCCAGGAAAGCAGCCTGTGTGGACACACAGCATTCGTTGTGTCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CAA 72 bp | CGGTACCACAGGATGTTGTTGGTCTTGATGTACACTTaGGCCCACTTACCTCTACATTCCGGGCACACTATA | + |
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Preference number: 4 (lower is better) Translates to: RYHRMLLVLMYT*AHLPLHSGHTI Trigger: TATAGTGTGCCCGGAATGTAGAGGTAAGTGGGCCAAAGTGTACATCAAGACCAACAACATCCTGTGGTACCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR TCA 90 bp | CTTACCTCTACATTCCGGGCACACTATATAGCATTCAGTATTTACATACATTTGGAGCATGCCACTGGCTaGGGAGATGTTGAGAATCAC | + |
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Preference number: 4 (lower is better) Translates to: LTSTFRAHYIAFSIYIHLEHATG*GDVENH Trigger: GTGATTCTCAACATCTCCTCAGCCAGTGGCATGCTC...CAAATGTATGTAAATACTGAATGCTATATAGTGTGCCCGGAATGTAGAGGTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR TCA 90 bp | CTTTATAGTAGCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGGGCCAGTATTTATCAGTTTCTTaGTGGTGTTGTCCAAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: LYSSFQTKYNVVIGTVGQYLSVS*WCCPSR Trigger: CCGACTTGGACAACACCATCAAGAAACTGATAAATA...CTGGCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR GCA 90 bp | GCACTTTATAGTAGCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGGGCTACAAAGGCCTTGGTTaGAGAGTAGATTGTCAACAA | + |
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Preference number: 4 (lower is better) Translates to: ALYSSFQTKYNVVIGTVGYKGLG*RVDCQQ Trigger: TTGTTGACAATCTACTCTGCAACCAAGGCCTTTGTA...GCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAAGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR TCA 90 bp | GAATATATGTTAGGAGCCTCTAAAAGGAATTTGTTTTCTGCCAACTATGCCATGACATCCAACGAGGCATaGTTGAGTTTATTGAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: EYMLGASKRNLFSANYAMTSNEA*LSLLSP Trigger: TGGGCTCAATAAACTCAATCATGCCTCGTTGGATGT...CATGGCATAGTTGGCAGAAAACAAATTCCTTTTAGAGGCTCCTAACATATATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CAA 72 bp | CAGAGCAGACATGATGTGTGGTCCAAGAATAACATTTaGTGGACTTACGTGTTAGAAAGAACTCCATGTTTC | + |
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Preference number: 4 (lower is better) Translates to: QSRHDVWSKNNI*WTYVLERTPCF Trigger: GAAACATGGAGTTCTTTCTAACACGTAAGTCCACAAAATGTTATTCTTGGACCACACATCATGTCTGCTCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR GCA 90 bp | CTTACCTCTACATTCCGGGCACACTATATAGCATTCAGTATTTACATACATTTGCCAGTGGTTCGGGTCTaGAAACCTACTGTTTTAATT | + |
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Preference number: 4 (lower is better) Translates to: LTSTFRAHYIAFSIYIHLPVVRV*KPTVLI Trigger: AATTAAAACAGTAGGTTTGCAGACCCGAACCACTGG...CAAATGTATGTAAATACTGAATGCTATATAGTGTGCCCGGAATGTAGAGGTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| 3UTR CAA 72 bp | TGTGTCTACCGCTGTCATTCTGGGATTTGTTCCTTTTaGTCAAAGGAACATACATTTGCCAAGAACATTTAC | + |
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Preference number: 4 (lower is better) Translates to: CVYRCHSGICSF*SKEHTFAKNIY Trigger: GTAAATGTTCTTGGCAAATGTATGTTCCTTTGACAAAAAGGAACAAATCCCAGAATGACAGCGGTAGACACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR CCA 90 bp | ATGTTAGGAGCCTCTAAAAGGAATTTGTTTTCTGCCAACTATGCCATGTTAGTAAATCTACAAAGGCCTTaGTTGCAGAGTAGATTGTCA | + |
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Preference number: 4 (lower is better) Translates to: MLGASKRNLFSANYAMLVNLQRP*LQSRLS Trigger: TGACAATCTACTCTGCAACCAAGGCCTTTGTAGATT...TACTAACATGGCATAGTTGGCAGAAAACAAATTCCTTTTAGAGGCTCCTAACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS TCA 90 bp | GACCGACCAAGGCCTCGTTGCCCACGCACCACACCTGGAAGGCCCTaGAGAGCGAGTACGAGGCTCGCAGGGCCAGGTAGGCAATGGTGC | + |
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Preference number: 5 (lower is better) Translates to: DRPRPRCPRTTPGRP*RASTRLAGPGRQWC Trigger: GCACCATTGCCTACCTGGCCCTGCGAGCCTCGTACTCGCTCTTCAGGGCCTTCCAGGTGTGGTGCGTGGGCAACGAGGCCTTGGTCGGTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR CAA 90 bp | TGGGGACAGGCAGGTGCCCAGTGTATAGGCACAGGTCAAACACCTGGCCAAGGGTCTTCATTCCACGTTTaGCTAACTCTTCTGCATATG | + |
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Preference number: 5 (lower is better) Translates to: WGQAGAQCIGTGQTPGQGSSFHV*LTLLHM Trigger: CATATGCAGAAGAGTTAGCAAAACGTGGAATGAAGA...CCCTTGGCCAGGTGTTTGACCTGTGCCTATACACTGGGCACCTGCCTGTCCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR CAA 90 bp | ACCAAATATAATGTGGTCATTGGCACTGTGGGCCAGATGGGTCTGTGTCTACCGACCAAGCGTGTCACCTaGCAAACGGAAAGCACATTA | + |
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Preference number: 5 (lower is better) Translates to: TKYNVVIGTVGQMGLCLPTKRVT*QTESTL Trigger: TAATGTGCTTTCCGTTTGCAAGGTGACACGCTTGGT...CGGTAGACACAGACCCATCTGGCCCACAGTGCCAATGACCACATTATATTTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR CAA 90 bp | GCACTTTATAGTAGCTTCCAGACCAAATATAATGTGGTCATTGGCACTGTGGGCCTGGCTGAGGAGATGTaGAGAATCACCCCTTTAGAT | + |
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Preference number: 5 (lower is better) Translates to: ALYSSFQTKYNVVIGTVGLAEEM*RITPLD Trigger: ATCTAAAGGGGTGATTCTCAACATCTCCTCAGCCAG...GCCCACAGTGCCAATGACCACATTATATTTGGTCTGGAAGCTACTATAAAGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS CCA 90 bp | TACATCCAACGAGGCATGATTGAGTTTATTGAGCCCATGAGAGAGTaGATCACATATCCAGTGGTTCGGGTCTGCAAACCTACTGTTTTA | + |
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Preference number: 5 (lower is better) Translates to: YIQRGMIEFIEPMRE*ITYPVVRVCKPTVL Trigger: TAAAACAGTAGGTTTGCAGACCCGAACCACTGGATATGTGATCCACTCTCTCATGGGCTCAATAAACTCAATCATGCCTCGTTGGATGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS-3UTR CAA 90 bp | AAGAACTCCATGTTTCAATTCTCTTTTTATGTCTTAGCCACCTTTGAGAAGACCATATTTATCAGTTTCTaGATGGTGTTGTCCAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: KNSMFQFSFYVLATFEKTIFISF*MVLSKS Trigger: CGACTTGGACAACACCATCAAGAAACTGATAAATAT...GGTCTTCTCAAAGGTGGCTAAGACATAAAAAGAGAATTGAAACATGGAGTTCTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS TCA 72 bp | AGGCCTCGTTGCCCACGCACCACACCTGGAAGGCCCTaGAGAGCGAGTACGAGGCTCGCAGGGCCAGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: RPRCPRTTPGRP*RASTRLAGPGR Trigger: CCTACCTGGCCCTGCGAGCCTCGTACTCGCTCTTCAGGGCCTTCCAGGTGTGGTGCGTGGGCAACGAGGCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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| CDS GCA 72 bp | TGCTTTTCCAATTCCATCAGTGCCACCTGTAACAACTaGCCATTCTCCGAGTCGCGGACCGACCAAGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: CFSNSISATCNN*PFSESRTDQGL Trigger: GAGGCCTTGGTCGGTCCGCGACTCGGAGAATGGGCAGTTGTTACAGGTGGCACTGATGGAATTGGAAAAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028619.5 |
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