Pregenerated sensors for HSD17B11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029311Ensembl transcript IDs: ENSMUST00000031251.16, ENSMUST00000119025.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTTCAGGGATTAATCTCTTTAGGAAGTCCACAGAGCGAAATCCCTaGAAGCACCTGTGCTCCCAGCTTACTCTGGTCTCACCCTGGGCC | + |
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Preference number: 1 (lower is better) Translates to: GSGINLFRKSTERNP*KHLCSQLTLVSPWA Trigger: GGCCCAGGGTGAGACCAGAGTAAGCTGGGAGCACAGGTGCTTGCAGGGATTTCGCTCTGTGGACTTCCTAAAGAGATTAATCCCTGAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR TCA 90 bp | CAGTCGTTGTCGTTACCCTGTCATTCAGGTCTGCATTTACAGCTGTaGCCTCCGGTCTTTCTCTCCTTGTTTCCCCACCTGTTTTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: QSLSLPCHSGLHLQL*PPVFLSLFPHLFSH Trigger: GTGGGAAAACAGGTGGGGAAACAAGGAGAGAAAGACCGGAGGTCACAGCTGTAAATGCAGACCTGAATGACAGGGTAACGACAACGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR CCA 90 bp | CAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTTaGTCCATTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTC | + |
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Preference number: 1 (lower is better) Translates to: QAMVSAADGDTEREI*SIYYFCLSICPRVF Trigger: GAAAACACGCGGACAGATGGACAGACAGAAATAATAAATGGACCAAATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR TCA 90 bp | AGTGCAGTTACAGACACTGTAAATGAAAACCGACAGTACAAGCTCTaGAAACCTGGTGATGAGCCACAGAATCTGGGGAAATTATCATCA | + |
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Preference number: 1 (lower is better) Translates to: SAVTDTVNENRQYKL*KPGDEPQNLGKLSS Trigger: TGATGATAATTTCCCCAGATTCTGTGGCTCATCACCAGGTTTTCAGAGCTTGTACTGTCGGTTTTCATTTACAGTGTCTGTAACTGCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR CCA 90 bp | GACTTCGATGGTTCATGGCTTAAGCGTGATCTTTTATCTCTACAATaGTTATACATTCTGTACACACTGTTTCAAATGTTACGTTTGGTC | + |
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Preference number: 1 (lower is better) Translates to: DFDGSWLKRDLLSLQ*LYILYTLFQMLRLV Trigger: GACCAAACGTAACATTTGAAACAGTGTGTACAGAATGTATAACCATTGTAGAGATAAAAGATCACGCTTAAGCCATGAACCATCGAAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR GCA 90 bp | CATCGCTGGGGTTCAGGAGCCCAGATTTTGTCCCAAGCACTCCAGGAGACAAAACCCTGCAAGCACCTGTaGTCCCAGCTTACTCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: HRWGSGAQILSQALQETKPCKHL*SQLTLV Trigger: GACCAGAGTAAGCTGGGAGCACAGGTGCTTGCAGGG...TTTTGTCTCCTGGAGTGCTTGGGACAAAATCTGGGCTCCTGAACCCCAGCGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR GCA 90 bp | AGACCTAACACCTCACAGAACTTAATGGCCGTGGGGGAGCACTTGGGAAAACTTACAGAGCGAAATCCCTaGAAGCACCTGTGCTCCCAG | + |
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Preference number: 2 (lower is better) Translates to: RPNTSQNLMAVGEHLGKLTERNP*KHLCSQ Trigger: CTGGGAGCACAGGTGCTTGCAGGGATTTCGCTCTGT...AAGTTTTCCCAAGTGCTCCCCCACGGCCATTAAGTTCTGTGAGGTGTTAGGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCTTTTCCTGGCTGATATGGGTAGATTAAGTGTAGAAGGAGAGAGACCTAACCCGTGGGGGAGCACTTaGGAAAACTTCATGCAGCCA | + |
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Preference number: 2 (lower is better) Translates to: GLFLADMGRLSVEGERPNPWGST*ENFMQP Trigger: TGGCTGCATGAAGTTTTCCCAAGTGCTCCCCCACGG...GTTAGGTCTCTCTCCTTCTACACTTAATCTACCCATATCAGCCAGGAAAAGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR TCA 90 bp | TTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTGCAACGTTACAGAGCACATaGCTCCGCTGTGAAATGACA | + |
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Preference number: 2 (lower is better) Translates to: FIISVCPSVRVFSSTQTATLQST*LRCEMT Trigger: TGTCATTTCACAGCGGAGTCATGTGCTCTGTAACGT...TGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAGACAGAAATAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR-3UTR TCA 90 bp | ATGATTACTATGCATACAAAGACTCTCCACCTCGGGAGTTGGCGGTGTTTAAAAACAAGCATCAGGACCTaGAAGCATCAGGTATCAGGC | + |
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Preference number: 2 (lower is better) Translates to: MITMHTKTLHLGSWRCLKTSIRT*KHQVSG Trigger: GCCTGATACCTGATGCTTTCAGGTCCTGATGCTTGT...TTTTAAACACCGCCAACTCCCGAGGTGGAGAGTCTTTGTATGCATAGTAATCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGGTAGATTAAGTGTAGAAGGAGAGAGACCTAACACCTCACAGAACTTAATGCTGCATTTACAGCTGTaGCCTCCGGTCTTTCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: MGRLSVEGERPNTSQNLMLHLQL*PPVFLS Trigger: GGAGAGAAAGACCGGAGGTCACAGCTGTAAATGCAG...CATTAAGTTCTGTGAGGTGTTAGGTCTCTCTCCTTCTACACTTAATCTACCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTTGGGTCTAGGACATGAAACTGGCTTTCATGACAATGGTCACAGCTTCAAGAGAAGAAATCAACTTTaGTCCAGTCAATCGGCTTTC | + |
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Preference number: 2 (lower is better) Translates to: CLGLGHETGFHDNGHSFKRRNQL*SSQSAF Trigger: GAAAGCCGATTGACTGGATCAAAGTTGATTTCTTCT...CTTGAAGCTGTGACCATTGTCATGAAAGCCAGTTTCATGTCCTAGACCCAAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR-3UTR TCA 90 bp | ATGGGTAGATTAAGTGTAGAAGGAGAGAGACCTAACACCTCACAGAACTTAATGACTGCTGATCGGGGTTaGAGGAACAAAGGAAAGATT | + |
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Preference number: 2 (lower is better) Translates to: MGRLSVEGERPNTSQNLMTADRG*RNKGKI Trigger: AATCTTTCCTTTGTTCCTTCAACCCCGATCAGCAGT...CATTAAGTTCTGTGAGGTGTTAGGTCTCTCTCCTTCTACACTTAATCTACCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR CCA 90 bp | TTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTGCAATGAGCCACAGAATCTaGGGAAATTATCATCACGAA | + |
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Preference number: 2 (lower is better) Translates to: FIISVCPSVRVFSSTQTAMSHRI*GNYHHE Trigger: TTCGTGATGATAATTTCCCCAGATTCTGTGGCTCAT...TGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAGACAGAAATAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR GCA 72 bp | AGGAAGTCCACAGAGCGAAATCCCTGCAAGCACCTGTaGTCCCAGCTTACTCTGGTCTCACCCTGGGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: RKSTERNPCKHL*SQLTLVSPWAS Trigger: GCTGGCCCAGGGTGAGACCAGAGTAAGCTGGGAGCACAGGTGCTTGCAGGGATTTCGCTCTGTGGACTTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR CCA 72 bp | CTGCAATCCCACAGACGCTTTTCCTCCAAGCTCCCTTaGGCTGGTATCTCAGGAAATAGCGCTGATCCACGG | + |
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Preference number: 3 (lower is better) Translates to: LQSHRRFSSKLP*AGISGNSADPR Trigger: CCGTGGATCAGCGCTATTTCCTGAGATACCAGCCCAAGGGAGCTTGGAGGAAAAGCGTCTGTGGGATTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR GCA 72 bp | CTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTaGAATCCCACAGACGCTTTTCCTCCAAGCTCCCTT | + |
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Preference number: 3 (lower is better) Translates to: LSICPRVFQYAD*NPTDAFPPSSL Trigger: AAGGGAGCTTGGAGGAAAAGCGTCTGTGGGATTGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR TCA 72 bp | TCGTTACCCTGTCATTCAGGTCTGCATTTACAGCTGTaGCCTCCGGTCTTTCTCTCCTTGTTTCCCCACCTG | + |
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Preference number: 3 (lower is better) Translates to: SLPCHSGLHLQL*PPVFLSLFPHL Trigger: CAGGTGGGGAAACAAGGAGAGAAAGACCGGAGGTCACAGCTGTAAATGCAGACCTGAATGACAGGGTAACGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR GCA 72 bp | ATTAATCTCTTTAGGAAGTCCACAGAGCGAAATCCCTaGAAGCACCTGTGCTCCCAGCTTACTCTGGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: INLFRKSTERNP*KHLCSQLTLVS Trigger: TGAGACCAGAGTAAGCTGGGAGCACAGGTGCTTGCAGGGATTTCGCTCTGTGGACTTCCTAAAGAGATTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR GCA 72 bp | TTAACCAGTCGTTGTCGTTACCCTGTCATTCAGGTCTaGATTTACAGCTGTGACCTCCGGTCTTTCTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: LTSRCRYPVIQV*IYSCDLRSFSP Trigger: AGGAGAGAAAGACCGGAGGTCACAGCTGTAAATGCAGACCTGAATGACAGGGTAACGACAACGACTGGTTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR CAA 90 bp | ATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTTGGTCCATTTATTATTTCCTCCAAGCTCCCTaGGGCTGGTATCTCAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: MVSAADGDTEREIWSIYYFLQAP*GWYLRK Trigger: TTTCCTGAGATACCAGCCCAAGGGAGCTTGGAGGAA...ATAATAAATGGACCAAATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR-3UTR CAA 90 bp | GGTCTTTTCCTGGCTGATATGGGTAGATTAAGTGTAGAAGGAGAGAGACCTAACCCGGTCTTTCTCTCCTaGTTTCCCCACCTGTTTTCC | + |
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Preference number: 3 (lower is better) Translates to: GLFLADMGRLSVEGERPNPVFLS*FPHLFS Trigger: GGAAAACAGGTGGGGAAACAAGGAGAGAAAGACCGG...GTTAGGTCTCTCTCCTTCTACACTTAATCTACCCATATCAGCCAGGAAAAGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR-3UTR CAA 90 bp | ATGATTACTATGCATACAAAGACTCTCCACCTCGGGAGTTGGCGGTGTTTAAAATCAGGAGCCCAGATTTaGTCCCAAGCACTCCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: MITMHTKTLHLGSWRCLKSGAQI*SQALQE Trigger: CTCCTGGAGTGCTTGGGACAAAATCTGGGCTCCTGA...TTTTAAACACCGCCAACTCCCGAGGTGGAGAGTCTTTGTATGCATAGTAATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR CCA 72 bp | GTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTTaGTCCATTTATTATTTCTGTCTGTCCATCTGTCCG | + |
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Preference number: 3 (lower is better) Translates to: VSAADGDTEREI*SIYYFCLSICP Trigger: CGGACAGATGGACAGACAGAAATAATAAATGGACCAAATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR GCA 72 bp | AGGGGGTCTCAGGCACAGGAAGGGCTATTCGATATTTaGTTTAAAATTCTGAGGCTTCCTAGACAAGTAAGC | + |
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Preference number: 3 (lower is better) Translates to: RGSQAQEGLFDI*FKILRLPRQVS Trigger: GCTTACTTGTCTAGGAAGCCTCAGAATTTTAAAGCAAATATCGAATAGCCCTTCCTGTGCCTGAGACCCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR TCA 72 bp | ACAGACACTGTAAATGAAAACCGACAGTACAAGCTCTaGAAACCTGGTGATGAGCCACAGAATCTGGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: TDTVNENRQYKL*KPGDEPQNLGK Trigger: TTTCCCCAGATTCTGTGGCTCATCACCAGGTTTTCAGAGCTTGTACTGTCGGTTTTCATTTACAGTGTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| 3UTR CCA 72 bp | ATTACTATGCATACAAAGACTCTCCACCTCGGGAGTTaGCGGTGTTTAAAAGGTAAACAGCAAGGAGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: ITMHTKTLHLGS*RCLKGKQQGAD Trigger: ATCAGCTCCTTGCTGTTTACCTTTTAAACACCGCCAACTCCCGAGGTGGAGAGTCTTTGTATGCATAGTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR TCA 72 bp | AAATGTGTATGTGAGTCTGAAACTGCTGATCGGGGTTaGAGGAACAAAGGAAAGATTAACCAGTCGTTGTCG | + |
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Preference number: 3 (lower is better) Translates to: KCVCESETADRG*RNKGKINQSLS Trigger: CGACAACGACTGGTTAATCTTTCCTTTGTTCCTTCAACCCCGATCAGCAGTTTCAGACTCACATACACATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CCA 90 bp | AGACCTAACACCTCACAGAACTTAATGGCCGTGGGGGAGCACTTGGGAAAACTTTCCACCACAAAGGGATaGGCCTGGGCACCCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: RPNTSQNLMAVGEHLGKLSTTKG*AWAPSF Trigger: GAAGCTGGGTGCCCAGGCCCATCCCTTTGTGGTGGA...AAGTTTTCCCAAGTGCTCCCCCACGGCCATTAAGTTCTGTGAGGTGTTAGGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CCA 90 bp | TTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTACAAAGGGATGGGCCTaGGCACCCAGCTTCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: FKGQAMVSAADGDTEREITKGWA*APSFLH Trigger: GTGCAGGAAGCTGGGTGCCCAGGCCCATCCCTTTGT...AATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CCA 90 bp | TATTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATCCACCACAAAGGGATaGGCCTGGGCACCCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: YLKVKPWSLQQMETLSVRSTTKG*AWAPSF Trigger: GAAGCTGGGTGCCCAGGCCCATCCCTTTGTGGTGGA...TCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR TCA 90 bp | TTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTGGTGTGGCCTGCTGCTaGTGCCACAGTGACAATGTG | + |
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Preference number: 4 (lower is better) Translates to: FKGQAMVSAADGDTEREIGVACC*CHSDNV Trigger: CACATTGTCACTGTGGCATCAGCAGCAGGCCACACC...AATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR GCA 90 bp | AAGAAATCAACTTTGATCCAGTCAATCGGCTTTCAGGGAACCGGAGCAGGCTGCCTGTGTTTTAGGACTTaGAGGAACCTCTCAGGGACG | + |
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Preference number: 4 (lower is better) Translates to: KKSTLIQSIGFQGTGAGCLCFRT*RNLSGT Trigger: CGTCCCTGAGAGGTTCCTGCAAGTCCTAAAACACAG...GCAGCCTGCTCCGGTTCCCTGAAAGCCGATTGACTGGATCAAAGTTGATTTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CCA 90 bp | ATGATTACTATGCATACAAAGACTCTCCACCTCGGGAGTTGGCGGTGTTTAAAAACAAAGGGATGGGCCTaGGCACCCAGCTTCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: MITMHTKTLHLGSWRCLKTKGWA*APSFLH Trigger: GTGCAGGAAGCTGGGTGCCCAGGCCCATCCCTTTGT...TTTTAAACACCGCCAACTCCCGAGGTGGAGAGTCTTTGTATGCATAGTAATCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR TCA 90 bp | ATGATTACTATGCATACAAAGACTCTCCACCTCGGGAGTTGGCGGTGTTTAAAAGGTGTGGCCTGCTGCTaGTGCCACAGTGACAATGTG | + |
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Preference number: 4 (lower is better) Translates to: MITMHTKTLHLGSWRCLKGVACC*CHSDNV Trigger: CACATTGTCACTGTGGCATCAGCAGCAGGCCACACC...TTTTAAACACCGCCAACTCCCGAGGTGGAGAGTCTTTGTATGCATAGTAATCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR GCA 90 bp | AGACCTAACACCTCACAGAACTTAATGGCCGTGGGGGAGCACTTGGGAAAACTTCATCACTGGGAGAAATaGCTTGGTGGTCCAAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: RPNTSQNLMAVGEHLGKLHHWEK*LGGPKV Trigger: CACTTTTGGACCACCAAGGCATTTCTCCCAGTGATG...AAGTTTTCCCAAGTGCTCCCCCACGGCCATTAAGTTCTGTGAGGTGTTAGGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR GCA 90 bp | TATTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGACATCACTGGGAGAAATaGCTTGGTGGTCCAAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: YLKVKPWSLQQMETLSVRHHWEK*LGGPKV Trigger: CACTTTTGGACCACCAAGGCATTTCTCCCAGTGATG...TCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR TCA 90 bp | AGACCTAACACCTCACAGAACTTAATGGCCGTGGGGGAGCACTTGGGAAAACTTAAAGTCTTTTCAATCTaGGGGTCCTGCGTAGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: RPNTSQNLMAVGEHLGKLKVFSI*GSCVAN Trigger: ATTTGCTACGCAGGACCCTCAGATTGAAAAGACTTT...AAGTTTTCCCAAGTGCTCCCCCACGGCCATTAAGTTCTGTGAGGTGTTAGGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR GCA 90 bp | TATTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGAGGAACGAAAATCATTTaGTTCTCAGTGAGGATCCCG | + |
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Preference number: 4 (lower is better) Translates to: YLKVKPWSLQQMETLSVRGTKII*FSVRIP Trigger: CGGGATCCTCACTGAGAAGCAAATGATTTTCGTTCC...TCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR TCA 90 bp | TATTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGAAAAGTCTTTTCAATCTaGGGGTCCTGCGTAGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: YLKVKPWSLQQMETLSVRKVFSI*GSCVAN Trigger: ATTTGCTACGCAGGACCCTCAGATTGAAAAGACTTT...TCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR TCA 90 bp | ATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTTGGTCCATTTATTATCGATGCCGTTCTTATTaGTATCCCAGAGAACCAGTT | + |
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Preference number: 4 (lower is better) Translates to: MVSAADGDTEREIWSIYYRCRSY*YPREPV Trigger: AACTGGTTCTCTGGGATATCAATAAGAACGGCATCG...ATAATAAATGGACCAAATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR TCA 90 bp | GGTCTTTTCCTGGCTGATATGGGTAGATTAAGTGTAGAAGGAGAGAGACCTAACCGATGCCGTTCTTATTaGTATCCCAGAGAACCAGTT | + |
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Preference number: 4 (lower is better) Translates to: GLFLADMGRLSVEGERPNRCRSY*YPREPV Trigger: AACTGGTTCTCTGGGATATCAATAAGAACGGCATCG...GTTAGGTCTCTCTCCTTCTACACTTAATCTACCCATATCAGCCAGGAAAAGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| 3UTR CAA 72 bp | AGCAGATACCATGAGACTGACAAGCGCCCACAGCAGTaGTGTGAGCTAATGATTACTATGCATACAAAGACT | + |
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Preference number: 4 (lower is better) Translates to: SRYHETDKRPQQ*CELMITMHTKT Trigger: AGTCTTTGTATGCATAGTAATCATTAGCTCACACAACTGCTGTGGGCGCTTGTCAGTCTCATGGTATCTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CCA 90 bp | AGCTCTGAAAACCTGGTGATGAGCCACAGAATCTGGGGAAATTATCATCACGAAATTCTTCATCATCACTaGGAGAAATGCCTTGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: SSENLVMSHRIWGNYHHEILHHH*EKCLGG Trigger: ACCACCAAGGCATTTCTCCCAGTGATGATGAAGAAT...TTCGTGATGATAATTTCCCCAGATTCTGTGGCTCATCACCAGGTTTTCAGAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR TCA 90 bp | TTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTGCAAGTGTGCAAGCACATTaGCTTCGAAAGTCTTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: FIISVCPSVRVFSSTQTASVQAH*LRKSFQ Trigger: TTGAAAAGACTTTCGAAGTCAATGTGCTTGCACACT...TGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAGACAGAAATAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS GCA 90 bp | CCAGCTCATCAGTCAAGGCTCTGTGGAAGCCAACGGCAGCAAACTTaGTGGAGCAGTAAGCCAGCAAGAAGGGGACCACGGTGTGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: PAHQSRLCGSQRQQT*WSSKPARRGPRCGL Trigger: CAGGCCACACCGTGGTCCCCTTCTTGCTGGCTTACTGCTCCAGCAAGTTTGCTGCCGTTGGCTTCCACAGAGCCTTGACTGATGAGCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031251.16 ENSMUST00000119025.2 |
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| CDS CCA 90 bp | GCTCATCAGTCAAGGCTCTGTGGAAGCCAACGGCAGCAAACTTGCTaGAGCAGTAAGCCAGCAAGAAGGGGACCACGGTGTGGCCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: AHQSRLCGSQRQQTC*SSKPARRGPRCGLL Trigger: CAGCAGGCCACACCGTGGTCCCCTTCTTGCTGGCTTACTGCTCCAGCAAGTTTGCTGCCGTTGGCTTCCACAGAGCCTTGACTGATGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031251.16 ENSMUST00000119025.2 |
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| CDS GCA 90 bp | CTTCCTTTACCTTTTTCGCAGCGCTGTAAATCTCTTCCCGCTGGCTaGAGTCCACCACAAAGGGATGGGCCTGGGCACCCAGCTTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: LPLPFSQRCKSLPAG*SPPQRDGPGHPASC Trigger: GCAGGAAGCTGGGTGCCCAGGCCCATCCCTTTGTGGTGGACTGCAGCCAGCGGGAAGAGATTTACAGCGCTGCGAAAAAGGTAAAGGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031251.16 ENSMUST00000119025.2 |
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| CDS-3UTR CAA 90 bp | CATCGCTGGGGTTCAGGAGCCCAGATTTTGTCCCAAGCACTCCAGGAGACAAAAAAGTGTGCAAGCACATaGACTTCGAAAGTCTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: HRWGSGAQILSQALQETKKCAST*TSKVFS Trigger: TGAAAAGACTTTCGAAGTCAATGTGCTTGCACACTT...TTTTGTCTCCTGGAGTGCTTGGGACAAAATCTGGGCTCCTGAACCCCAGCGATG 48% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CAA 90 bp | ATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTTGGTCCATTTATTATCCGGTGTTTATGAAGTaGGGGCAGAGGCACGATGTT | + |
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Preference number: 5 (lower is better) Translates to: MVSAADGDTEREIWSIYYPVFMK*GQRHDV Trigger: AACATCGTGCCTCTGCCCCAACTTCATAAACACCGG...ATAATAAATGGACCAAATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | TATTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTGGTGCTTGGGTTCTaGATGAAGCCGGTGTTTATG | + |
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Preference number: 5 (lower is better) Translates to: YLKVKPWSLQQMETLSVRLVLGF*MKPVFM Trigger: CATAAACACCGGCTTCATCAAGAACCCAAGCACCAA...TCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | CTCCTCACCACTACCCTACCCCAACCAAGCAATGTAAATCATCGCTGGGGTTCATTGGGAATAAAAAGCTaGACAAGAGACTCAATGCTG | + |
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Preference number: 5 (lower is better) Translates to: LLTTTLPQPSNVNHRWGSLGIKS*TRDSML Trigger: CAGCATTGAGTCTCTTGTCAAGCTTTTTATTCCCAA...TGAACCCCAGCGATGATTTACATTGCTTGGTTGGGGTAGGGTAGTGGTGAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CAA 90 bp | TTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTGCAACTGGGAGAAATGCCTaGGTGGTCCAAAAGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: FIISVCPSVRVFSSTQTATGRNA*VVQKCA Trigger: TGCACACTTTTGGACCACCAAGGCATTTCTCCCAGT...TGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAGACAGAAATAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | TTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTGCAAGGGTGGGTCCTAAATaGGTGCTTGGGTTCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: FIISVCPSVRVFSSTQTARVGPK*VLGFLM Trigger: CATCAAGAACCCAAGCACCAATTTAGGACCCACCCT...TGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAGACAGAAATAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | TTTAAAGGTCAAGCCATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTGCATCGAACTTGACGTaGATCCTGTGTTTTAGGACT | + |
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Preference number: 5 (lower is better) Translates to: FKGQAMVSAADGDTEREIASNLT*ILCFRT Trigger: AGTCCTAAAACACAGGATCAACGTCAAGTTCGATGC...AATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCATGGCTTGACCTTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | AAGAAATCAACTTTGATCCAGTCAATCGGCTTTCAGGGAACCGGAGCAGGCTGCAAGTGTGCAAGCACATaGACTTCGAAAGTCTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: KKSTLIQSIGFQGTGAGCKCAST*TSKVFS Trigger: TGAAAAGACTTTCGAAGTCAATGTGCTTGCACACTT...GCAGCCTGCTCCGGTTCCCTGAAAGCCGATTGACTGGATCAAAGTTGATTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | TATGTGAGTCTGAAACTGCTGATCGGGGTTGAAGGAACAAAGGAAAGATTAACCACTGGGAGAAATGCCTaGGTGGTCCAAAAGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: YVSLKLLIGVEGTKERLTTGRNA*VVQKCA Trigger: TGCACACTTTTGGACCACCAAGGCATTTCTCCCAGT...GGTTAATCTTTCCTTTGTTCCTTCAACCCCGATCAGCAGTTTCAGACTCACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CAA 90 bp | ATGGGTAGATTAAGTGTAGAAGGAGAGAGACCTAACACCTCACAGAACTTAATGCCGGTGTTTATGAAGTaGGGGCAGAGGCACGATGTT | + |
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Preference number: 5 (lower is better) Translates to: MGRLSVEGERPNTSQNLMPVFMK*GQRHDV Trigger: AACATCGTGCCTCTGCCCCAACTTCATAAACACCGG...CATTAAGTTCTGTGAGGTGTTAGGTCTCTCTCCTTCTACACTTAATCTACCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CAA 90 bp | GGTCTTTTCCTGGCTGATATGGGTAGATTAAGTGTAGAAGGAGAGAGACCTAACTTGGTGCTTGGGTTCTaGATGAAGCCGGTGTTTATG | + |
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Preference number: 5 (lower is better) Translates to: GLFLADMGRLSVEGERPNLVLGF*MKPVFM Trigger: CATAAACACCGGCTTCATCAAGAACCCAAGCACCAA...GTTAGGTCTCTCTCCTTCTACACTTAATCTACCCATATCAGCCAGGAAAAGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS-3UTR CAA 90 bp | ATGGTCTCTGCAGCAGATGGAGACACTGAGCGTGAGATTTGGTCCATTTATTATCGGAACGAAAATCATTaGCTTCTCAGTGAGGATCCC | + |
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Preference number: 5 (lower is better) Translates to: MVSAADGDTEREIWSIYYRNENH*LLSEDP Trigger: GGGATCCTCACTGAGAAGCAAATGATTTTCGTTCCG...ATAATAAATGGACCAAATCTCACGCTCAGTGTCTCCATCTGCTGCAGAGACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | TTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTGCATCGATGCCGTTCTTATaGATATCCCAGAGAACCAGT | + |
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Preference number: 5 (lower is better) Translates to: FIISVCPSVRVFSSTQTASMPFL*ISQRTS Trigger: ACTGGTTCTCTGGGATATCAATAAGAACGGCATCGA...TGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAGACAGAAATAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | TTTATTATTTCTGTCTGTCCATCTGTCCGCGTGTTTTCCAGTACGCAGACTGCATCCCAGAGAACCAGTTaGGTGTTAAGTTTGGCAAAT | + |
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Preference number: 5 (lower is better) Translates to: FIISVCPSVRVFSSTQTASQRTS*VLSLAN Trigger: ATTTGCCAAACTTAACACCAAACTGGTTCTCTGGGA...TGCAGTCTGCGTACTGGAAAACACGCGGACAGATGGACAGACAGAAATAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | TGTTTGGGTCTAGGACATGAAACTGGCTTTCATGACAATGGTCACAGCTTCAAGTTGGGAATAAAAAGCTaGACAAGAGACTCAATGCTG | + |
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Preference number: 5 (lower is better) Translates to: CLGLGHETGFHDNGHSFKLGIKS*TRDSML Trigger: CAGCATTGAGTCTCTTGTCAAGCTTTTTATTCCCAA...CTTGAAGCTGTGACCATTGTCATGAAAGCCAGTTTCATGTCCTAGACCCAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS-3UTR CAA 90 bp | ATGATTACTATGCATACAAAGACTCTCCACCTCGGGAGTTGGCGGTGTTTAAAATCCCAGAGAACCAGTTaGGTGTTAAGTTTGGCAAAT | + |
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Preference number: 5 (lower is better) Translates to: MITMHTKTLHLGSWRCLKSQRTS*VLSLAN Trigger: ATTTGCCAAACTTAACACCAAACTGGTTCTCTGGGA...TTTTAAACACCGCCAACTCCCGAGGTGGAGAGTCTTTGTATGCATAGTAATCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119025.2 |
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| CDS GCA 72 bp | CAGTCAAGGCTCTGTGGAAGCCAACGGCAGCAAACTTaGTGGAGCAGTAAGCCAGCAAGAAGGGGACCACGG | + |
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Preference number: 6 (lower is better) Translates to: QSRLCGSQRQQT*WSSKPARRGPR Trigger: CCGTGGTCCCCTTCTTGCTGGCTTACTGCTCCAGCAAGTTTGCTGCCGTTGGCTTCCACAGAGCCTTGACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031251.16 ENSMUST00000119025.2 |
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| CDS CCA 72 bp | TCAAGGCTCTGTGGAAGCCAACGGCAGCAAACTTGCTaGAGCAGTAAGCCAGCAAGAAGGGGACCACGGTGT | + |
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Preference number: 6 (lower is better) Translates to: SRLCGSQRQQTC*SSKPARRGPRC Trigger: ACACCGTGGTCCCCTTCTTGCTGGCTTACTGCTCCAGCAAGTTTGCTGCCGTTGGCTTCCACAGAGCCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031251.16 ENSMUST00000119025.2 |
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| CDS TCA 72 bp | AGCCAGCAAGAAGGGGACCACGGTGTGGCCTGCTGCTaGTGCCACAGTGACAATGTGGCCATGATTATTCTT | + |
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Preference number: 6 (lower is better) Translates to: SQQEGDHGVACC*CHSDNVAMIIL Trigger: AAGAATAATCATGGCCACATTGTCACTGTGGCATCAGCAGCAGGCCACACCGTGGTCCCCTTCTTGCTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031251.16 ENSMUST00000119025.2 |
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| CDS CAA 90 bp | ACCTCCTCGGGTTCCAGGGTGGGTCCTAAATTGGTGCTTGGGTTCTaGATGAAGCCGGTGTTTATGAAGTTGGGGCAGAGGCACGATGTT | + |
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Preference number: 6 (lower is better) Translates to: TSSGSRVGPKLVLGF*MKPVFMKLGQRHDV Trigger: AACATCGTGCCTCTGCCCCAACTTCATAAACACCGGCTTCATCAAGAACCCAAGCACCAATTTAGGACCCACCCTGGAACCCGAGGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS CAA 72 bp | GGTTCCAGGGTGGGTCCTAAATTGGTGCTTGGGTTCTaGATGAAGCCGGTGTTTATGAAGTTGGGGCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: GSRVGPKLVLGF*MKPVFMKLGQR Trigger: CCTCTGCCCCAACTTCATAAACACCGGCTTCATCAAGAACCCAAGCACCAATTTAGGACCCACCCTGGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS CAA 90 bp | CCTAAATTGGTGCTTGGGTTCTTGATGAAGCCGGTGTTTATGAAGTaGGGGCAGAGGCACGATGTTCGCACTCCTGTTCGTCCCAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: PKLVLGFLMKPVFMK*GQRHDVRTPVRPKA Trigger: TGCCTTGGGACGAACAGGAGTGCGAACATCGTGCCTCTGCCCCAACTTCATAAACACCGGCTTCATCAAGAACCCAAGCACCAATTTAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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| CDS TCA 72 bp | GAAATGCCTTGGTGGTCCAAAAGTGTGCAAGCACATTaGCTTCGAAAGTCTTTTCAATCTGAGGGTCCTGCG | + |
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Preference number: 6 (lower is better) Translates to: EMPWWSKSVQAH*LRKSFQSEGPA Trigger: CGCAGGACCCTCAGATTGAAAAGACTTTCGAAGTCAATGTGCTTGCACACTTTTGGACCACCAAGGCATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031251.16 ENSMUST00000119025.2 |
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| CDS GCA 72 bp | CCTCTCAGGGACGATCCTTTCCAATACTGTCAGAAGTaGTATGGAACTCGGAACGAAAATCATTTGCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: PLRDDPFQYCQK*YGTRNENHLLL Trigger: GAGAAGCAAATGATTTTCGTTCCGAGTTCCATAGCACTTCTGACAGTATTGGAAAGGATCGTCCCTGAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031251.16 |
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