RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HSD17B10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025260

Ensembl transcript IDs: ENSMUST00000026289.10, ENSMUST00000112617.4

Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTaGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTC +
Preference number: 1 (lower is better)
Translates to: ENLLGTEGEWSRVTK*LLAFLQIEKELVFL
Trigger: GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
3UTR-3UTR CCA 90 bp AATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTAAATTGAAAAGGAGCTaGTGTTTCTCCTGCCTTGGC +
Preference number: 2 (lower is better)
Translates to: NLLGTEGEWSRVTKWLLAKLKRS*CFSCLG
Trigger: GCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTT...AGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
3UTR CCA 72 bp TTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTaGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTG +
Preference number: 3 (lower is better)
Translates to: LGTEGEWSRVTK*LLAFLQIEKEL
Trigger: CAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
3UTR CCA 72 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTaGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCCTT +
Preference number: 3 (lower is better)
Translates to: WKFENLLGTEGE*SRVTKWLLAFL
Trigger: AAGGAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCGGTCACCTAGTCGGCTaGGGAAGGGTACCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFGHLVG*GRVPGW
Trigger: CCAGCCAGGTACCCTTCCCCAGCCGACTAGGTGACC...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCGGTCACCTAGTCGGCTaGGGAAGGGTACCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPGHLVG*GRVPGW
Trigger: CCAGCCAGGTACCCTTCCCCAGCCGACTAGGTGACC...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTACCACGTTGGCCTCCCTaGTCTGGTTCATTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLPRWPP*SGSFWP
Trigger: GGGCCAGAATGAACCAGACCAGGGAGGCCAACGTGG...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCGCAGCTTGTCCAACCTaGCCCTCAAAGGCAGCCACA +
Preference number: 4 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFAACPT*PSKAAT
Trigger: TGTGGCTGCCTTTGAGGGCCAGGTTGGACAAGCTGC...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR TCA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCCCCCATCCAGCCGGATaGCCTCTCCATTCAAGAATG +
Preference number: 4 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPPHPAG*PLHSRM
Trigger: CATTCTTGAATGGAGAGGTCATCCGGCTGGATGGGG...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
51% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTACCAGAAGTACAGCTGTaGCCCCTTGTCCCACCAGTC +
Preference number: 4 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLPEVQL*PLVPPV
Trigger: GACTGGTGGGACAAGGGGCCACAGCTGTACTTCTGG...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCTGGTCTGGTTCATTCTaGCCCATCTCCCCAGCAACC +
Preference number: 4 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPWSGSF*PISPAT
Trigger: GGTTGCTGGGGAGATGGGCCAGAATGAACCAGACCA...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGCCACGTTGGCCTCCCTaGTCTGGTTCATTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: WKFENLLGTEGEWSRVTKPRWPP*SGSFWP
Trigger: GGGCCAGAATGAACCAGACCAGGGAGGCCAACGTGG...CTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTCTGGGGAAGGGTACCTaGCTGGCCAAGAAGTTTCGC +
Preference number: 4 (lower is better)
Translates to: NLLGTEGEWSRVTKWLLALGKGT*LAKKFR
Trigger: GCGAAACTTCTTGGCCAGCCAGGTACCCTTCCCCAG...AGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCGGCCACTGCAATACCTaGACAGTTGACAGCCACATC +
Preference number: 4 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFGHCNT*TVDSHI
Trigger: GATGTGGCTGTCAACTGTGCAGGTATTGCAGTGGCC...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTACAATGGGCAGTGTCATaGCCACTATGCCCCCTTTGG +
Preference number: 4 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLQWAVS*PLCPLW
Trigger: CCAAAGGGGGCATAGTGGGCATGACACTGCCCATTG...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGCCAGAAGTACAGCTGTaGCCCCTTGTCCCACCAGTC +
Preference number: 4 (lower is better)
Translates to: WKFENLLGTEGEWSRVTKPEVQL*PLVPPV
Trigger: GACTGGTGGGACAAGGGGCCACAGCTGTACTTCTGG...CTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTGGTCTGGTTCATTCTaGCCCATCTCCCCAGCAACC +
Preference number: 4 (lower is better)
Translates to: NLLGTEGEWSRVTKWLLAWSGSF*PISPAT
Trigger: GGTTGCTGGGGAGATGGGCCAGAATGAACCAGACCA...AGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTGCAGCTTGTCCAACCTaGCCCTCAAAGGCAGCCACA +
Preference number: 4 (lower is better)
Translates to: KWLLAFLQIEKELVFLLPAACPT*PSKAAT
Trigger: TGTGGCTGCCTTTGAGGGCCAGGTTGGACAAGCTGC...AGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCGGAAGGGTACCTGGCTaGCCAAGAAGTTTCGCACTT +
Preference number: 4 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPGRVPG*PRSFAL
Trigger: AAGTGCGAAACTTCTTGGCCAGCCAGGTACCCTTCC...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCTATGCCCCCTTTGGATaGAGAGTATGCAGCTTGTCC +
Preference number: 4 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFYAPFG*RVCSLS
Trigger: GGACAAGCTGCATACTCTGCATCCAAAGGGGGCATA...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCCCTAACTTCTTGGCTTaGGCTTCACCCTCTGAGTCA +
Preference number: 4 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFPNFLA*ASPSES
Trigger: TGACTCAGAGGGTGAAGCCCAAGCCAAGAAGTTAGG...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCATGATAACTCCACGTTaGCCTCCCTGGTCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPMITPR*PPWSGS
Trigger: TGAACCAGACCAGGGAGGCCAACGTGGAGTTATCAT...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGCCAGATCTCGAGCAATaGGCAGTGTCATGCCCACTA +
Preference number: 4 (lower is better)
Translates to: FENLLGTEGEWSRVTKWLPDLEQ*AVSCPL
Trigger: TAGTGGGCATGACACTGCCCATTGCTCGAGATCTGG...CAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAAAGGGTGGTAAGCAGTaGGGTGGCAAACAAACCTGG +
Preference number: 4 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLKGGKQ*GGKQTW
Trigger: CCAGGTTTGTTTGCCACCCCACTGCTTACCACCCTT...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR TCA 90 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTTGGGCTTCACCCTCTaGGTCAGGTACATCCAGAAG +
Preference number: 4 (lower is better)
Translates to: WKFENLLGTEGEWSRVTKLGFTL*VRYIQK
Trigger: CTTCTGGATGTACCTGACTCAGAGGGTGAAGCCCAA...CTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR TCA 90 bp AAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTTGGGCTTCACCCTCTaGGTCAGGTACATCCAGAAG +
Preference number: 4 (lower is better)
Translates to: KWLLAFLQIEKELVFLLPLGFTL*VRYIQK
Trigger: CTTCTGGATGTACCTGACTCAGAGGGTGAAGCCCAA...AGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR TCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTACAATACCTGCACAGTTaGCAGCCACATCTATACGGC +
Preference number: 4 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLQYLHS*QPHLYG
Trigger: GCCGTATAGATGTGGCTGTCAACTGTGCAGGTATTG...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp AAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTGGCCACTGCAATACCTaGACAGTTGACAGCCACATC +
Preference number: 4 (lower is better)
Translates to: KWLLAFLQIEKELVFLLPGHCNT*TVDSHI
Trigger: GATGTGGCTGTCAACTGTGCAGGTATTGCAGTGGCC...AGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTACCTAACTTCTTGGCTTaGGCTTCACCCTCTGAGTCA +
Preference number: 4 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLPNFLA*ASPSES
Trigger: TGACTCAGAGGGTGAAGCCCAAGCCAAGAAGTTAGG...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTATGATAACTCCACGTTaGCCTCCCTGGTCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: NLLGTEGEWSRVTKWLLAMITPR*PPWSGS
Trigger: TGAACCAGACCAGGGAGGCCAACGTGGAGTTATCAT...AGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGCCACTATGCCCCCTTTaGATGCAGAGTATGCAGCTT +
Preference number: 4 (lower is better)
Translates to: FENLLGTEGEWSRVTKWLPLCPL*MQSMQL
Trigger: AAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGG...CAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTCCAGATCTCGAGCAATaGGCAGTGTCATGCCCACTA +
Preference number: 4 (lower is better)
Translates to: KWLLAFLQIEKELVFLLPPDLEQ*AVSCPL
Trigger: TAGTGGGCATGACACTGCCCATTGCTCGAGATCTGG...AGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCGGTGGCAAACAAACCTaGAGCAATTGTTACCACACG +
Preference number: 4 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPGGKQT*SNCYHT
Trigger: CGTGTGGTAACAATTGCTCCAGGTTTGTTTGCCACC...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTAAGGGTGGTAAGCAGTaGGGTGGCAAACAAACCTGG +
Preference number: 4 (lower is better)
Translates to: KWLLAFLQIEKELVFLLPKGGKQ*GGKQTW
Trigger: CCAGGTTTGTTTGCCACCCCACTGCTTACCACCCTT...AGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGGGGAAGGGTACCTaGCTGGCCAAGAAGTTTCGC +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLLGKGT*LAKKFR
Trigger: GCGAAACTTCTTGGCCAGCCAGGTACCCTTCCCCAG...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCAATGGGCAGTGTCATaGCCACTATGCCCCCTTTGG +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLQWAVS*PLCPLW
Trigger: CCAAAGGGGGCATAGTGGGCATGACACTGCCCATTG...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGCCACTATGCCCCCTTTaGATGCAGAGTATGCAGCTT +
Preference number: 4 (lower is better)
Translates to: WKFENLLGTEGEWSRVTKPLCPL*MQSMQL
Trigger: AAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGG...CTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGGGTGGCAAACAAACCTaGAGCAATTGTTACCACACG +
Preference number: 4 (lower is better)
Translates to: WKFENLLGTEGEWSRVTKGGKQT*SNCYHT
Trigger: CGTGTGGTAACAATTGCTCCAGGTTTGTTTGCCACC...CTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR TCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCAATACCTGCACAGTTaGCAGCCACATCTATACGGC +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLQYLHS*QPHLYG
Trigger: GCCGTATAGATGTGGCTGTCAACTGTGCAGGTATTG...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTATTGCTGGGGCAAATATaGAGCTTTCTCCTAACTTCT +
Preference number: 4 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLLLGQI*SFLLTS
Trigger: AGAAGTTAGGAGAAAGCTGCATATTTGCCCCAGCAA...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCTATGCCCCCTTTGGATaGAGAGTATGCAGCTTGTCC +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLYAPFG*RVCSLS
Trigger: GGACAAGCTGCATACTCTGCATCCAAAGGGGGCATA...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGATGGGTTCTCGATTATaGTCTGTACCAGATGAGCAT +
Preference number: 4 (lower is better)
Translates to: FENLLGTEGEWSRVTKWLMGSRL*SVPDEH
Trigger: ATGCTCATCTGGTACAGACCATAATCGAGAACCCAT...CAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCTTTCTCCTAACTTCTTaGCTTGGGCTTCACCCTCTG +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLFLLTS*LGLHPL
Trigger: CAGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAA...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCATCTTGTTCTTCTTTTaGTGGTATGTCTTAATGGCC +
Preference number: 4 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFILFFF*WYVLMA
Trigger: GGCCATTAAGACATACCACCAAAAGAAGAACAAGAT...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTATGGGTTCTCGATTATaGTCTGTACCAGATGAGCAT +
Preference number: 4 (lower is better)
Translates to: KWLLAFLQIEKELVFLLPMGSRL*SVPDEH
Trigger: ATGCTCATCTGGTACAGACCATAATCGAGAACCCAT...AGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCTGTCTTAATGGCCACTaGAATACCTGCACAGTTGAC +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLCLNGH*NTCTVD
Trigger: GTCAACTGTGCAGGTATTGCAGTGGCCATTAAGACA...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR GCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCTTGCTGGGGCAAATATaGAGCTTTCTCCTAACTTCT +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLLLGQI*SFLLTS
Trigger: AGAAGTTAGGAGAAAGCTGCATATTTGCCCCAGCAA...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp AAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTAAGTCCTCCAAAGTATaGATCTTGTTCTTCTTTTGG +
Preference number: 4 (lower is better)
Translates to: KWLLAFLQIEKELVFLLPKSSKV*ILFFFW
Trigger: CCAAAAGAAGAACAAGATCCATACTTTGGAGGACTT...AGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGAAGTCCTCCAAAGTATaGATCTTGTTCTTCTTTTGG +
Preference number: 4 (lower is better)
Translates to: WKFENLLGTEGEWSRVTKKSSKV*ILFFFW
Trigger: CCAAAAGAAGAACAAGATCCATACTTTGGAGGACTT...CTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CCA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCATCTTGTTCTTCTTTTaGTGGTATGTCTTAATGGCC +
Preference number: 4 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLILFFF*WYVLMA
Trigger: GGCCATTAAGACATACCACCAAAAGAAGAACAAGAT...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp GCAGCCACACTGGCAGTGTTAATGATAACTCCACGTTGGCCTCCCTaGTCTGGTTCATTCTGGCCCATCTCCCCAGCAACCAGGCGGATC +
Preference number: 5 (lower is better)
Translates to: AATLAVLMITPRWPP*SGSFWPISPATRRI
Trigger: GATCCGCCTGGTTGCTGGGGAGATGGGCCAGAATGAACCAGACCAGGGAGGCCAACGTGGAGTTATCATTAACACTGCCAGTGTGGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp CCAGATCTCGAGCAATGGGCAGTGTCATGCCCACTATGCCCCCTTTaGATGCAGAGTATGCAGCTTGTCCAACCTGGCCCTCAAAGGCAG +
Preference number: 5 (lower is better)
Translates to: PDLEQWAVSCPLCPL*MQSMQLVQPGPQRQ
Trigger: CTGCCTTTGAGGGCCAGGTTGGACAAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGGCATGACACTGCCCATTGCTCGAGATCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp GTGTTAATGATAACTCCACGTTGGCCTCCCTGGTCTGGTTCATTCTaGCCCATCTCCCCAGCAACCAGGCGGATCACATTGAAAGTGCCT +
Preference number: 5 (lower is better)
Translates to: VLMITPRWPPWSGSF*PISPATRRITLKVP
Trigger: AGGCACTTTCAATGTGATCCGCCTGGTTGCTGGGGAGATGGGCCAGAATGAACCAGACCAGGGAGGCCAACGTGGAGTTATCATTAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS TCA 90 bp ACCTCTCCATTCAAGAATGGGTTCTCGATTATGGTCTGTACCAGATaGGCATATTCAGCGGGGTCACCTAGTCGGCTGGGGAAGGGTACC +
Preference number: 5 (lower is better)
Translates to: TSPFKNGFSIMVCTR*AYSAGSPSRLGKGT
Trigger: GGTACCCTTCCCCAGCCGACTAGGTGACCCCGCTGAATATGCTCATCTGGTACAGACCATAATCGAGAACCCATTCTTGAATGGAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCTACAGCTGTGGCCCCTaGTCCCACCAGTCTTTTGGC +
Preference number: 5 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFYSCGP*SHQSFG
Trigger: GCCAAAAGACTGGTGGGACAAGGGGCCACAGCTGTA...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp CATTCGAATGGCCCCATCCAGCCGGATGACCTCTCCATTCAAGAATaGGTTCTCGATTATGGTCTGTACCAGATGAGCATATTCAGCGGG +
Preference number: 5 (lower is better)
Translates to: HSNGPIQPDDLSIQE*VLDYGLYQMSIFSG
Trigger: CCCGCTGAATATGCTCATCTGGTACAGACCATAATCGAGAACCCATTCTTGAATGGAGAGGTCATCCGGCTGGATGGGGCCATTCGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCCCCACTATGCCCCCTTaGGATGCAGAGTATGCAGCT +
Preference number: 5 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPPTMPP*DAEYAA
Trigger: AGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGG...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCCCCACTATGCCCCCTTaGGATGCAGAGTATGCAGCT +
Preference number: 5 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFPTMPP*DAEYAA
Trigger: AGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGG...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp ACATTTGCTGGGGCAAATATGCAGCTTTCTCCTAACTTCTTGGCTTaGGCTTCACCCTCTGAGTCAGGTACATCCAGAAGTACAGCTGTG +
Preference number: 5 (lower is better)
Translates to: TFAGANMQLSPNFLA*ASPSESGTSRSTAV
Trigger: CACAGCTGTACTTCTGGATGTACCTGACTCAGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAAGCTGCATATTTGCCCCAGCAAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp AGGTCACATTTGCTGGGGCAAATATGCAGCTTTCTCCTAACTTCTTaGCTTGGGCTTCACCCTCTGAGTCAGGTACATCCAGAAGTACAG +
Preference number: 5 (lower is better)
Translates to: RSHLLGQICSFLLTS*LGLHPLSQVHPEVQ
Trigger: CTGTACTTCTGGATGTACCTGACTCAGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAAGCTGCATATTTGCCCCAGCAAATGTGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp TTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGAATGATAACTCCACGTaGGCCTCCCTGGTCTGGTTC +
Preference number: 5 (lower is better)
Translates to: FENLLGTEGEWSRVTKWLNDNST*ASLVWF
Trigger: GAACCAGACCAGGGAGGCCAACGTGGAGTTATCATT...CAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCTACAGCTGTGGCCCCTaGTCCCACCAGTCTTTTGGC +
Preference number: 5 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLYSCGP*SHQSFG
Trigger: GCCAAAAGACTGGTGGGACAAGGGGCCACAGCTGTA...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp TTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGCTTTCTCCTAACTTCTaGGCTTGGGCTTCACCCTCT +
Preference number: 5 (lower is better)
Translates to: FENLLGTEGEWSRVTKWLLSPNF*AWASPS
Trigger: AGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAAG...CAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCAATACCTGCACAGTaGACAGCCACATCTATACGG +
Preference number: 5 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLAIPAQ*TATSIR
Trigger: CCGTATAGATGTGGCTGTCAACTGTGCAGGTATTGC...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp TGGAAGTTTGAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGCAGAGTATGCAGCTaGTCCAACCTGGCCCTCAAA +
Preference number: 5 (lower is better)
Translates to: WKFENLLGTEGEWSRVTKCRVCS*SNLALK
Trigger: TTTGAGGGCCAGGTTGGACAAGCTGCATACTCTGCA...CTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTCAAACTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp TTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTAGCTTTCACCAGGCGGATCACATaGAAAGTGCCTATAAGATTC +
Preference number: 5 (lower is better)
Translates to: LLGTEGEWSRVTKWLLAFTRRIT*KVPIRF
Trigger: GAATCTTATAGGCACTTTCAATGTGATCCGCCTGGT...GAAAGCTAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTTTCTCCTAACTTCTaGGCTTGGGCTTCACCCTCT +
Preference number: 5 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLLSPNF*AWASPS
Trigger: AGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAAG...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCGATCTTGTTCTTCTTTaGGTGGTATGTCTTAATGGC +
Preference number: 5 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPDLVLL*VVCLNG
Trigger: GCCATTAAGACATACCACCAAAAGAAGAACAAGATC...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS TCA 90 bp ACATTGAAAGTGCCTATAAGATTCACCTGGAGGATGGTAGAACCATaGTGTAGGATATTGATAACCCGCTGGAAGTCCTCCAAAGTATGG +
Preference number: 5 (lower is better)
Translates to: TLKVPIRFTWRMVEP*CRILITRWKSSKVW
Trigger: CCATACTTTGGAGGACTTCCAGCGGGTTATCAATATCCTACATCATGGTTCTACCATCCTCCAGGTGAATCTTATAGGCACTTTCAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp CTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCCTGCCTTGGCCCTCCAAAGTATGGATCTaGTTCTTCTTTTGGTGGTAT +
Preference number: 5 (lower is better)
Translates to: LLAFLQIEKELVFLLPWPSKVWI*FFFWWY
Trigger: ATACCACCAAAAGAAGAACAAGATCCATACTTTGGA...GGGCCAAGGCAGGAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp CCTATAAGATTCACATTGATAACCCGCTGGAAGTCCTCCAAAGTATaGATCTTGTTCTTCTTTTGGTGGTATGTCTTAATGGCCACTGCA +
Preference number: 5 (lower is better)
Translates to: PIRFTLITRWKSSKV*ILFFFWWYVLMATA
Trigger: TGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAATGTGAATCTTATAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026289.10
CDS-3UTR CAA 90 bp GAGAATTTATTAGGCACCGAGGGTGAGTGGAGCAGAGTTACAAAGTGGCTGTTATCCAAAGTATGGATCTaGTTCTTCTTTTGGTGGTAT +
Preference number: 5 (lower is better)
Translates to: ENLLGTEGEWSRVTKWLLSKVWI*FFFWWY
Trigger: ATACCACCAAAAGAAGAACAAGATCCATACTTTGGA...TAACAGCCACTTTGTAACTCTGCTCCACTCACCCTCGGTGCCTAATAAATTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS-3UTR CAA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCACCAGGCGGATCACATaGAAAGTGCCTATAAGATTC +
Preference number: 5 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLTRRIT*KVPIRF
Trigger: GAATCTTATAGGCACTTTCAATGTGATCCGCCTGGT...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 90 bp CGGATCACATTGAAAGTGCCTATAAGATTCACATTGATAACCCGCTaGAAGTCCTCCAAAGTATGGATCTTGTTCTTCTTTTGGTGGTAT +
Preference number: 5 (lower is better)
Translates to: RITLKVPIRFTLITR*KSSKVWILFFFWWY
Trigger: ATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAATGTGAATCTTATAGGCACTTTCAATGTGATCCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026289.10
CDS-3UTR CAA 90 bp GTTACAAAGTGGCTGTTAGCTTTCCTTCAAATTGAAAAGGAGCTGGTGTTTCTCGATCTTGTTCTTCTTTaGGTGGTATGTCTTAATGGC +
Preference number: 5 (lower is better)
Translates to: VTKWLLAFLQIEKELVFLDLVLL*VVCLNG
Trigger: GCCATTAAGACATACCACCAAAAGAAGAACAAGATC...GAGAAACACCAGCTCCTTTTCAATTTGAAGGAAAGCTAACAGCCACTTTGTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 72 bp CGGGGTCACCTAGTCGGCTGGGGAAGGGTACCTGGCTaGCCAAGAAGTTTCGCACTTTCTCTGGAAGGGTGG +
Preference number: 6 (lower is better)
Translates to: RGHLVGWGRVPG*PRSFALSLEGW
Trigger: CCACCCTTCCAGAGAAAGTGCGAAACTTCTTGGCCAGCCAGGTACCCTTCCCCAGCCGACTAGGTGACCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 72 bp TCAGCGGGGTCACCTAGTCGGCTGGGGAAGGGTACCTaGCTGGCCAAGAAGTTTCGCACTTTCTCTGGAAGG +
Preference number: 6 (lower is better)
Translates to: SAGSPSRLGKGT*LAKKFRTFSGR
Trigger: CCTTCCAGAGAAAGTGCGAAACTTCTTGGCCAGCCAGGTACCCTTCCCCAGCCGACTAGGTGACCCCGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 90 bp GGTACATCCAGAAGTACAGCTGTGGCCCCTTGTCCCACCAGTCTTTaGGCCGTAGCTAGGCCAAGGCCCGAGGCTCCTCCAGTTACTACC +
Preference number: 6 (lower is better)
Translates to: GTSRSTAVAPCPTSL*AVARPRPEAPPVTT
Trigger: GGTAGTAACTGGAGGAGCCTCGGGCCTTGGCCTAGCTACGGCCAAAAGACTGGTGGGACAAGGGGCCACAGCTGTACTTCTGGATGTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 72 bp CGAGCAATGGGCAGTGTCATGCCCACTATGCCCCCTTaGGATGCAGAGTATGCAGCTTGTCCAACCTGGCCC +
Preference number: 6 (lower is better)
Translates to: RAMGSVMPTMPP*DAEYAACPTWP
Trigger: GGGCCAGGTTGGACAAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGGCATGACACTGCCCATTGCTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 90 bp GCCAGATCTCGAGCAATGGGCAGTGTCATGCCCACTATGCCCCCTTaGGATGCAGAGTATGCAGCTTGTCCAACCTGGCCCTCAAAGGCA +
Preference number: 6 (lower is better)
Translates to: ARSRAMGSVMPTMPP*DAEYAACPTWPSKA
Trigger: TGCCTTTGAGGGCCAGGTTGGACAAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGGCATGACACTGCCCATTGCTCGAGATCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 72 bp GAGCAATGGGCAGTGTCATGCCCACTATGCCCCCTTTaGATGCAGAGTATGCAGCTTGTCCAACCTGGCCCT +
Preference number: 6 (lower is better)
Translates to: EQWAVSCPLCPL*MQSMQLVQPGP
Trigger: AGGGCCAGGTTGGACAAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGGCATGACACTGCCCATTGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS GCA 72 bp CCAGATCTCGAGCAATGGGCAGTGTCATGCCCACTATaGCCCCTTTGGATGCAGAGTATGCAGCTTGTCCAA +
Preference number: 6 (lower is better)
Translates to: PDLEQWAVSCPL*PLWMQSMQLVQ
Trigger: TTGGACAAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGGCATGACACTGCCCATTGCTCGAGATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS TCA 72 bp TTCAAGAATGGGTTCTCGATTATGGTCTGTACCAGATaGGCATATTCAGCGGGGTCACCTAGTCGGCTGGGG +
Preference number: 6 (lower is better)
Translates to: FKNGFSIMVCTR*AYSAGSPSRLG
Trigger: CCCCAGCCGACTAGGTGACCCCGCTGAATATGCTCATCTGGTACAGACCATAATCGAGAACCCATTCTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 72 bp GGCCCCATCCAGCCGGATGACCTCTCCATTCAAGAATaGGTTCTCGATTATGGTCTGTACCAGATGAGCATA +
Preference number: 6 (lower is better)
Translates to: GPIQPDDLSIQE*VLDYGLYQMSI
Trigger: TATGCTCATCTGGTACAGACCATAATCGAGAACCCATTCTTGAATGGAGAGGTCATCCGGCTGGATGGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 72 bp TTCTGGCCCATCTCCCCAGCAACCAGGCGGATCACATaGAAAGTGCCTATAAGATTCACCTGGAGGATGGTA +
Preference number: 6 (lower is better)
Translates to: FWPISPATRRIT*KVPIRFTWRMV
Trigger: TACCATCCTCCAGGTGAATCTTATAGGCACTTTCAATGTGATCCGCCTGGTTGCTGGGGAGATGGGCCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112617.4
CDS CAA 90 bp TCTGGTTCATTCTGGCCCATCTCCCCAGCAACCAGGCGGATCACATaGAAAGTGCCTATAAGATTCACATTGATAACCCGCTGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: SGSFWPISPATRRIT*KVPIRFTLITRWKS
Trigger: GGACTTCCAGCGGGTTATCAATGTGAATCTTATAGGCACTTTCAATGTGATCCGCCTGGTTGCTGGGGAGATGGGCCAGAATGAACCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026289.10
CDS CCA 72 bp GGGGCAAATATGCAGCTTTCTCCTAACTTCTTGGCTTaGGCTTCACCCTCTGAGTCAGGTACATCCAGAAGT +
Preference number: 6 (lower is better)
Translates to: GANMQLSPNFLA*ASPSESGTSRS
Trigger: ACTTCTGGATGTACCTGACTCAGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAAGCTGCATATTTGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 72 bp TTGCTGGGGCAAATATGCAGCTTTCTCCTAACTTCTTaGCTTGGGCTTCACCCTCTGAGTCAGGTACATCCA +
Preference number: 6 (lower is better)
Translates to: LLGQICSFLLTS*LGLHPLSQVHP
Trigger: TGGATGTACCTGACTCAGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAAGCTGCATATTTGCCCCAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 72 bp TTCTGGCCCATCTCCCCAGCAACCAGGCGGATCACATaGAAAGTGCCTATAAGATTCACATTGATAACCCGC +
Preference number: 6 (lower is better)
Translates to: FWPISPATRRIT*KVPIRFTLITR
Trigger: GCGGGTTATCAATGTGAATCTTATAGGCACTTTCAATGTGATCCGCCTGGTTGCTGGGGAGATGGGCCAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026289.10
CDS CAA 90 bp GAGGTCACATTTGCTGGGGCAAATATGCAGCTTTCTCCTAACTTCTaGGCTTGGGCTTCACCCTCTGAGTCAGGTACATCCAGAAGTACA +
Preference number: 6 (lower is better)
Translates to: EVTFAGANMQLSPNF*AWASPSESGTSRST
Trigger: TGTACTTCTGGATGTACCTGACTCAGAGGGTGAAGCCCAAGCCAAGAAGTTAGGAGAAAGCTGCATATTTGCCCCAGCAAATGTGACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 90 bp GATAACCCGCTGGAAGTCCTCCAAAGTATGGATCTTGTTCTTCTTTaGGTGGTATGTCTTAATGGCCACTGCAATACCTGCACAGTTGAC +
Preference number: 6 (lower is better)
Translates to: DNPLEVLQSMDLVLL*VVCLNGHCNTCTVD
Trigger: GTCAACTGTGCAGGTATTGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS GCA 72 bp CTTGTTCTTCTTTTGGTGGTATGTCTTAATGGCCACTaGAATACCTGCACAGTTGACAGCCACATCTATACG +
Preference number: 6 (lower is better)
Translates to: LVLLLVVCLNGH*NTCTVDSHIYT
Trigger: CGTATAGATGTGGCTGTCAACTGTGCAGGTATTGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 72 bp AAGTCCTCCAAAGTATGGATCTTGTTCTTCTTTTGGTaGTATGTCTTAATGGCCACTGCAATACCTGCACAG +
Preference number: 6 (lower is better)
Translates to: KSSKVWILFFFW*YVLMATAIPAQ
Trigger: CTGTGCAGGTATTGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CCA 72 bp TGGAAGTCCTCCAAAGTATGGATCTTGTTCTTCTTTTaGTGGTATGTCTTAATGGCCACTGCAATACCTGCA +
Preference number: 6 (lower is better)
Translates to: WKSSKVWILFFF*WYVLMATAIPA
Trigger: TGCAGGTATTGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 72 bp TGGTATGTCTTAATGGCCACTGCAATACCTGCACAGTaGACAGCCACATCTATACGGCCAAACTTTTCTTTT +
Preference number: 6 (lower is better)
Translates to: WYVLMATAIPAQ*TATSIRPNFSF
Trigger: AAAAGAAAAGTTTGGCCGTATAGATGTGGCTGTCAACTGTGCAGGTATTGCAGTGGCCATTAAGACATACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 72 bp TTGATAACCCGCTGGAAGTCCTCCAAAGTATGGATCTaGTTCTTCTTTTGGTGGTATGTCTTAATGGCCACT +
Preference number: 6 (lower is better)
Translates to: LITRWKSSKVWI*FFFWWYVLMAT
Trigger: AGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026289.10
ENSMUST00000112617.4
CDS CAA 90 bp AGATTCACATTGATAACCCGCTGGAAGTCCTCCAAAGTATGGATCTaGTTCTTCTTTTGGTGGTATGTCTTAATGGCCACTGCAATACCT +
Preference number: 6 (lower is better)
Translates to: RFTLITRWKSSKVWI*FFFWWYVLMATAIP
Trigger: AGGTATTGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAATGTGAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026289.10
CDS CAA 90 bp TGTAGGATATTGATAACCCGCTGGAAGTCCTCCAAAGTATGGATCTaGTTCTTCTTTTGGTGGTATGTCTTAATGGCCACTGCAATACCT +
Preference number: 6 (lower is better)
Translates to: CRILITRWKSSKVWI*FFFWWYVLMATAIP
Trigger: AGGTATTGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAATATCCTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112617.4
CDS CCA 72 bp TTCACATTGATAACCCGCTGGAAGTCCTCCAAAGTATaGATCTTGTTCTTCTTTTGGTGGTATGTCTTAATG +
Preference number: 6 (lower is better)
Translates to: FTLITRWKSSKV*ILFFFWWYVLM
Trigger: CATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAATGTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026289.10
CDS CCA 72 bp AGGATATTGATAACCCGCTGGAAGTCCTCCAAAGTATaGATCTTGTTCTTCTTTTGGTGGTATGTCTTAATG +
Preference number: 6 (lower is better)
Translates to: RILITRWKSSKV*ILFFFWWYVLM
Trigger: CATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAATATCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112617.4
CDS CCA 72 bp TTGAAAGTGCCTATAAGATTCACATTGATAACCCGCTaGAAGTCCTCCAAAGTATGGATCTTGTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: LKVPIRFTLITR*KSSKVWILFFF
Trigger: AAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGTTATCAATGTGAATCTTATAGGCACTTTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026289.10