Pregenerated sensors for HSD17B1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019301Ensembl transcript IDs: ENSMUST00000019445.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | ATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTaGTTGCACACATCTAAGGTCCCAGCACGCAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: MLALFQMILRSV*LHTSKVPARRR Trigger: CCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| 3UTR TCA 72 bp | CTTAGCCTAGCACCTTGGATATCAGCCCTCTTATCTTaGCCCATGAAGATGCTGGCACTATTTCAAATGATT | + |
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Preference number: 3 (lower is better) Translates to: LSLAPWISALLS*PMKMLALFQMI Trigger: AATCATTTGAAATAGTGCCAGCATCTTCATGGGTCAAGATAAGAGGGCTGATATCCAAGGTGCTAGGCTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR GCA 90 bp | CTGAGAAGTGTGTGGTTGCACACATCTAAGGTCCCAGCACGCAGGAGGCAGAGGGCGGGTCTGGGCATCTaGTCGTTCCAGAGCCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: LRSVWLHTSKVPARRRQRAGLGI*SFQSPA Trigger: GGCGGGGCTCTGGAACGAGCAGATGCCCAGACCCGC...CCTCTGCCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | ATTCTGAGAAGTGTGTGGTTGCACACATCTAAGGTCCCAGCACGCAGGAGGCAGCTCCGTCACCTCCTCTaGGTCCTGCGCCTCGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: ILRSVWLHTSKVPARRRQLRHLL*VLRLAQ Trigger: CTGAGCGAGGCGCAGGACCCAGAGGAGGTGACGGAG...CTGCCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAGAAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | CTGAGAAGTGTGTGGTTGCACACATCTAAGGTCCCAGCACGCAGGAGGCAGAGGCATAGCTGCTGCCACTaGGATCCTCTGTGCGCATTC | + |
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Preference number: 4 (lower is better) Translates to: LRSVWLHTSKVPARRRQRHSCCH*DPLCAF Trigger: GAATGCGCACAGAGGATCCCAGTGGCAGCAGCTATG...CCTCTGCCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | ATTCTGAGAAGTGTGTGGTTGCACACATCTAAGGTCCCAGCACGCAGGAGGCAGCTTGGGCCCCAGCCTTaGCATTCTCCTGGGTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ILRSVWLHTSKVPARRRQLGPQP*HSPGSA Trigger: TGCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAG...CTGCCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR GCA 90 bp | AGGCAGAGGCAGGTGGGTCTTTATGAGTTACTGGCAACACAGGGCTACATAGTGACCCTCAGTCACGCATaGCTGGGCAGCAGCCACAGA | + |
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Preference number: 4 (lower is better) Translates to: RQRQVGLYELLATQGYIVTLSHA*LGSSHR Trigger: TCTGTGGCTGCTGCCCAGGCATGCGTGACTGAGGGT...CACTATGTAGCCCTGTGTTGCCAGTAACTCATAAAGACCCACCTGCCTCTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | AGGCAGAGGCAGGTGGGTCTTTATGAGTTACTGGCAACACAGGGCTACATAGTGAGCACACGCCCAGAGTaGCGCCTCTTCATGTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: RQRQVGLYELLATQGYIVSTRPE*RLFMSG Trigger: GCCAGACATGAAGAGGCGCCACTCTGGGCGTGTGCT...CACTATGTAGCCCTGTGTTGCCAGTAACTCATAAAGACCCACCTGCCTCTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | AGGCAGGTGGGTCTTTATGAGTTACTGGCAACACAGGGCTACATAGTGAAACCCGGCGGCCTCCAACAATaGTCCCTGTGCCTTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: RQVGLYELLATQGYIVKPGGLQQ*SLCLQV Trigger: GACCTGAAGGCACAGGGACCATTGTTGGAGGCCGCC...GGGTTTCACTATGTAGCCCTGTGTTGCCAGTAACTCATAAAGACCCACCTGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR TCA 90 bp | CTGAGAAGTGTGTGGTTGCACACATCTAAGGTCCCAGCACGCAGGAGGCAGAGGATGTGGCATAAACTTTaGAGCTCTGGGAACGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LRSVWLHTSKVPARRRQRMWHKL*SSGNGQ Trigger: CTGACCGTTCCCAGAGCTTCAAAGTTTATGCCACAT...CCTCTGCCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | AGGCAGAGGCAGGTGGGTCTTTATGAGTTACTGGCAACACAGGGCTACATAGTGTCAGTCACGCATGCCTaGGCAGCAGCCACAGATTTG | + |
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Preference number: 4 (lower is better) Translates to: RQRQVGLYELLATQGYIVSVTHA*AAATDL Trigger: CAAATCTGTGGCTGCTGCCCAGGCATGCGTGACTGA...CACTATGTAGCCCTGTGTTGCCAGTAACTCATAAAGACCCACCTGCCTCTGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR TCA 90 bp | CATGAAGATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTGGTTGCACACCCAGGAGGGCATCCTTaGGTCCTGGCGGCCTCCAAC | + |
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Preference number: 4 (lower is better) Translates to: HEDAGTISNDSEKCVVAHPGGHP*VLAASN Trigger: GTTGGAGGCCGCCAGGACTCAAGGATGCCCTCCTGG...GTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCATCTTCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR GCA 90 bp | AGGCAGAGGCAGGTGGGTCTTTATGAGTTACTGGCAACACAGGGCTACATAGTGCAACAATGGTCCCTGTaGCTTCAGGTCCCGCAATGT | + |
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Preference number: 4 (lower is better) Translates to: RQRQVGLYELLATQGYIVQQWSL*LQVPQC Trigger: ACATTGCGGGACCTGAAGGCACAGGGACCATTGTTG...CACTATGTAGCCCTGTGTTGCCAGTAACTCATAAAGACCCACCTGCCTCTGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | AGGCAGGTGGGTCTTTATGAGTTACTGGCAACACAGGGCTACATAGTGAAACCCGCGCCTCTTCATGTCTaGCAGAAAGGCCTGCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: RQVGLYELLATQGYIVKPAPLHV*QKGLQH Trigger: ATGCTGCAGGCCTTTCTGCCAGACATGAAGAGGCGC...GGGTTTCACTATGTAGCCCTGTGTTGCCAGTAACTCATAAAGACCCACCTGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | AGGCAGGTGGGTCTTTATGAGTTACTGGCAACACAGGGCTACATAGTGAAACCCGCACAGTACACTTCGTaGAATGGCAGTCCCATCAAG | + |
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Preference number: 4 (lower is better) Translates to: RQVGLYELLATQGYIVKPAQYTS*NGSPIK Trigger: CTTGATGGGACTGCCATTCCACGAAGTGTACTGTGC...GGGTTTCACTATGTAGCCCTGTGTTGCCAGTAACTCATAAAGACCCACCTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR GCA 90 bp | CATGAAGATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTGGTTGCACACAGGCGAACAGCCAAGTaGATGCCGATTCCAGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: HEDAGTISNDSEKCVVAHRRTAK*MPIPEE Trigger: CTCCTCTGGAATCGGCATGCACTTGGCTGTTCGCCT...GTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCATCTTCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR GCA 90 bp | CATGAAGATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTGGTTGCACACGAACAGCCAAGTGCATaGCGATTCCAGAGGAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: HEDAGTISNDSEKCVVAHEQPSA*RFQRSN Trigger: GTTGCTCCTCTGGAATCGGCATGCACTTGGCTGTTC...GTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCATCTTCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CCA 90 bp | CATGAAGATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTGGTTGCACACCCTGCAGCATCCGAATaGTCCCAAGCACATTCACAT | + |
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Preference number: 4 (lower is better) Translates to: HEDAGTISNDSEKCVVAHPAASE*SQAHSH Trigger: ATGTGAATGTGCTTGGGACCATTCGGATGCTGCAGG...GTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCATCTTCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR GCA 90 bp | CATGAAGATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTGGTTGCACACGCATTCTCCTGGGTCTaGAGATTAGAGAAGGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: HEDAGTISNDSEKCVVAHAFSWV*RLEKAS Trigger: AGAAGCCTTCTCTAATCTGCAGACCCAGGAGAATGC...GTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCATCTTCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR TCA 90 bp | CATGAAGATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTGGTTGCACACCTTTTGCTGGTAACATaGATTGTCCTGACCCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: HEDAGTISNDSEKCVVAHLLLVT*IVLTRF Trigger: AAACCGGGTCAGGACAATTCATGTTACCAGCAAAAG...GTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCATCTTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS GCA 90 bp | GCGGTTCGTGGAGAAGTAGCGCAGCGCGGGCTGCGGGGCTCGCATTaGAGTCAAGAAGAGCTCCGTCACCTCCTCTGGGTCCTGCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: AVRGEVAQRGLRGSH*SQEELRHLLWVLRL Trigger: GAGGCGCAGGACCCAGAGGAGGTGACGGAGCTCTTCTTGACTGCAATGCGAGCCCCGCAGCCCGCGCTGCGCTACTTCTCCACGAACCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CCA 90 bp | AGGCAAATGAGGGCGCTGGAGGCCGTGTCCGAGACCCCCGGGACTTaGGCCCCAGCCTTGGCATTCTCCTGGGTCTGCAGATTAGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: RQMRALEAVSETPGT*APALAFSWVCRLEK Trigger: CTTCTCTAATCTGCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAGTCCCGGGGGTCTCGGACACGGCCTCCAGCGCCCTCATTTGCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS GCA 90 bp | CTTGGTGCATGGCCGCGACATAGCTGCTGCCACTGGGATCCTCTGTaGGCATTCGGGCCAGGGGTAGGAAGCGGTTCGTGGAGAAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: LGAWPRHSCCHWDPL*AFGPGVGSGSWRSS Trigger: GCTACTTCTCCACGAACCGCTTCCTACCCCTGGCCCGAATGCGCACAGAGGATCCCAGTGGCAGCAGCTATGTCGCGGCCATGCACCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CCA 90 bp | ACTCGCGGTCACCAGCACACGCCCAGAGTGGCGCCTCTTCATGTCTaGCAGAAAGGCCTGCAGCATCCGAATGGTCCCAAGCACATTCAC | + |
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Preference number: 5 (lower is better) Translates to: TRGHQHTPRVAPLHV*QKGLQHPNGPKHIH Trigger: GTGAATGTGCTTGGGACCATTCGGATGCTGCAGGCCTTTCTGCCAGACATGAAGAGGCGCCACTCTGGGCGTGTGCTGGTGACCGCGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CAA 90 bp | CTGAGAAGTGTGTGGTTGCACACATCTAAGGTCCCAGCACGCAGGAGGCAGAGGACTTGGGCCCCAGCCTaGGCATTCTCCTGGGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: LRSVWLHTSKVPARRRQRTWAPA*AFSWVC Trigger: GCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAGT...CCTCTGCCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CCA 90 bp | CCAATTCCAGTATCTCCAAGGAGCCAGGAGGGCATCCTTGAGTCCTaGCGGCCTCCAACAATGGTCCCTGTGCCTTCAGGTCCCGCAATG | + |
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Preference number: 5 (lower is better) Translates to: PIPVSPRSQEGILES*RPPTMVPVPSGPAM Trigger: CATTGCGGGACCTGAAGGCACAGGGACCATTGTTGGAGGCCGCCAGGACTCAAGGATGCCCTCCTGGCTCCTTGGAGATACTGGAATTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS GCA 90 bp | TTTATCCGATGCAGACCACCCCAATTCAGATGCCACCCTAGGGATTaGACATTCAGGGAGGCAAATGAGGGCGCTGGAGGCCGTGTCCGA | + |
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Preference number: 5 (lower is better) Translates to: FIRCRPPQFRCHPRD*TFREANEGAGGRVR Trigger: TCGGACACGGCCTCCAGCGCCCTCATTTGCCTCCCTGAATGTGCAATCCCTAGGGTGGCATCTGAATTGGGGTGGTCTGCATCGGATAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CAA 90 bp | CTGAGAAGTGTGTGGTTGCACACATCTAAGGTCCCAGCACGCAGGAGGCAGAGGATTAGAGAAGGCTTCTaGGTGCATGGCCGCGACATA | + |
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Preference number: 5 (lower is better) Translates to: LRSVWLHTSKVPARRRQRIREGF*VHGRDI Trigger: TATGTCGCGGCCATGCACCAAGAAGCCTTCTCTAAT...CCTCTGCCTCCTGCGTGCTGGGACCTTAGATGTGTGCAACCACACACTTCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS-3UTR CAA 90 bp | CATGAAGATGCTGGCACTATTTCAAATGATTCTGAGAAGTGTGTGGTTGCACACCGAGACCCCCGGGACTaGGGCCCCAGCCTTGGCATT | + |
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Preference number: 5 (lower is better) Translates to: HEDAGTISNDSEKCVVAHRDPRD*GPSLGI Trigger: AATGCCAAGGCTGGGGCCCAAGTCCCGGGGGTCTCG...GTGTGCAACCACACACTTCTCAGAATCATTTGAAATAGTGCCAGCATCTTCATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS GCA 72 bp | CAGGTAGTGCGCAAAGAGGTGGCGGGTCTGGGCATCTaGTCGTTCCAGAGCCCCGCCGGGGCCGCCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: QVVRKEVAGLGI*SFQSPAGAAHQ Trigger: CTGGTGGGCGGCCCCGGCGGGGCTCTGGAACGAGCAGATGCCCAGACCCGCCACCTCTTTGCGCACTACCTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 72 bp | GAGGGCGCTGGAGGCCGTGTCCGAGACCCCCGGGACTaGGGCCCCAGCCTTGGCATTCTCCTGGGTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: EGAGGRVRDPRD*GPSLGILLGLQ Trigger: CTGCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAGTCCCGGGGGTCTCGGACACGGCCTCCAGCGCCCTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CCA 72 bp | AGGGCGCTGGAGGCCGTGTCCGAGACCCCCGGGACTTaGGCCCCAGCCTTGGCATTCTCCTGGGTCTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: RALEAVSETPGT*APALAFSWVCR Trigger: TCTGCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAGTCCCGGGGGTCTCGGACACGGCCTCCAGCGCCCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS GCA 72 bp | TGGCCGCGACATAGCTGCTGCCACTGGGATCCTCTGTaGGCATTCGGGCCAGGGGTAGGAAGCGGTTCGTGG | + |
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Preference number: 6 (lower is better) Translates to: WPRHSCCHWDPL*AFGPGVGSGSW Trigger: CCACGAACCGCTTCCTACCCCTGGCCCGAATGCGCACAGAGGATCCCAGTGGCAGCAGCTATGTCGCGGCCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 90 bp | GAAGAGCTCCGTCACCTCCTCTGGGTCCTGCGCCTCGCTCAGGGCTaGCTCATAACCACGCAGGTAGTGCGCAAAGAGGTGGCGGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: EELRHLLWVLRLAQG*LITTQVVRKEVAGL Trigger: CAGACCCGCCACCTCTTTGCGCACTACCTGCGTGGTTATGAGCAAGCCCTGAGCGAGGCGCAGGACCCAGAGGAGGTGACGGAGCTCTTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 90 bp | GAGGCAAATGAGGGCGCTGGAGGCCGTGTCCGAGACCCCCGGGACTaGGGCCCCAGCCTTGGCATTCTCCTGGGTCTGCAGATTAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: EANEGAGGRVRDPRD*GPSLGILLGLQIRE Trigger: TTCTCTAATCTGCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAGTCCCGGGGGTCTCGGACACGGCCTCCAGCGCCCTCATTTGCCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 72 bp | CGTCACCTCCTCTGGGTCCTGCGCCTCGCTCAGGGCTaGCTCATAACCACGCAGGTAGTGCGCAAAGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RHLLWVLRLAQG*LITTQVVRKEV Trigger: CACCTCTTTGCGCACTACCTGCGTGGTTATGAGCAAGCCCTGAGCGAGGCGCAGGACCCAGAGGAGGTGACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS GCA 72 bp | GGGACTTGGGCCCCAGCCTTGGCATTCTCCTGGGTCTaGAGATTAGAGAAGGCTTCTTGGTGCATGGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: GTWAPALAFSWV*RLEKASWCMAA Trigger: CGCGGCCATGCACCAAGAAGCCTTCTCTAATCTGCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAGTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CCA 72 bp | GTATCTCCAAGGAGCCAGGAGGGCATCCTTGAGTCCTaGCGGCCTCCAACAATGGTCCCTGTGCCTTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: VSPRSQEGILES*RPPTMVPVPSG Trigger: ACCTGAAGGCACAGGGACCATTGTTGGAGGCCGCCAGGACTCAAGGATGCCCTCCTGGCTCCTTGGAGATAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CCA 72 bp | TCGCATTGCAGTCAAGAAGAGCTCCGTCACCTCCTCTaGGTCCTGCGCCTCGCTCAGGGCTTGCTCATAACC | + |
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Preference number: 6 (lower is better) Translates to: SHCSQEELRHLL*VLRLAQGLLIT Trigger: GGTTATGAGCAAGCCCTGAGCGAGGCGCAGGACCCAGAGGAGGTGACGGAGCTCTTCTTGACTGCAATGCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 90 bp | CCCAGCCTTGGCATTCTCCTGGGTCTGCAGATTAGAGAAGGCTTCTaGGTGCATGGCCGCGACATAGCTGCTGCCACTGGGATCCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: PSLGILLGLQIREGF*VHGRDIAAATGILC Trigger: ACAGAGGATCCCAGTGGCAGCAGCTATGTCGCGGCCATGCACCAAGAAGCCTTCTCTAATCTGCAGACCCAGGAGAATGCCAAGGCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS GCA 72 bp | TGCAGACCACCCCAATTCAGATGCCACCCTAGGGATTaGACATTCAGGGAGGCAAATGAGGGCGCTGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: CRPPQFRCHPRD*TFREANEGAGG Trigger: GCCTCCAGCGCCCTCATTTGCCTCCCTGAATGTGCAATCCCTAGGGTGGCATCTGAATTGGGGTGGTCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 72 bp | CAATTCCAGTATCTCCAAGGAGCCAGGAGGGCATCCTaGAGTCCTGGCGGCCTCCAACAATGGTCCCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: QFQYLQGARRAS*SPGGLQQWSLC Trigger: GCACAGGGACCATTGTTGGAGGCCGCCAGGACTCAAGGATGCCCTCCTGGCTCCTTGGAGATACTGGAATTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 72 bp | GGCATTCTCCTGGGTCTGCAGATTAGAGAAGGCTTCTaGGTGCATGGCCGCGACATAGCTGCTGCCACTGGG | + |
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Preference number: 6 (lower is better) Translates to: GILLGLQIREGF*VHGRDIAAATG Trigger: CCCAGTGGCAGCAGCTATGTCGCGGCCATGCACCAAGAAGCCTTCTCTAATCTGCAGACCCAGGAGAATGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 90 bp | TCTGACATCCAATTCCAGTATCTCCAAGGAGCCAGGAGGGCATCCTaGAGTCCTGGCGGCCTCCAACAATGGTCCCTGTGCCTTCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: SDIQFQYLQGARRAS*SPGGLQQWSLCLQV Trigger: GACCTGAAGGCACAGGGACCATTGTTGGAGGCCGCCAGGACTCAAGGATGCCCTCCTGGCTCCTTGGAGATACTGGAATTGGATGTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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| CDS CAA 72 bp | CCCTCAGTCACGCATGCCTGGGCAGCAGCCACAGATTaGGAGTCTCTGACATCCAATTCCAGTATCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: PSVTHAWAAATD*ESLTSNSSISK Trigger: CTTGGAGATACTGGAATTGGATGTCAGAGACTCCAAATCTGTGGCTGCTGCCCAGGCATGCGTGACTGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019445.6 |
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