Pregenerated sensors for HSCB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043510Ensembl transcript IDs: ENSMUST00000056937.12, ENSMUST00000144850.8, ENSMUST00000145318.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACAGTGGCTTCTATCTCTTCCATGGCGGCCTCACTTTGGGCGTCTaGGAGTCTTTCATTGATTTCCATGATTTCCACAAGGAACTGACT | + |
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Preference number: 1 (lower is better) Translates to: DSGFYLFHGGLTLGV*ESFIDFHDFHKELT Trigger: AGTCAGTTCCTTGTGGAAATCATGGAAATCAATGAAAGACTCGCAGACGCCCAAAGTGAGGCCGCCATGGAAGAGATAGAAGCCACTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144850.8 |
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| 3UTR CAA 90 bp | TTTAGCTCTGACAGTGGCTTCTATCTCTTCCATGGCGGCCTCACTTaGGGCGTCTGCGAGTCTTTCATTGATTTCCATGATTTCCACAAG | + |
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Preference number: 2 (lower is better) Translates to: FSSDSGFYLFHGGLT*GVCESFIDFHDFHK Trigger: CTTGTGGAAATCATGGAAATCAATGAAAGACTCGCAGACGCCCAAAGTGAGGCCGCCATGGAAGAGATAGAAGCCACTGTCAGAGCTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144850.8 |
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| 3UTR CCA 72 bp | ACAGTGGCTTCTATCTCTTCCATGGCGGCCTCACTTTaGGCGTCTGCGAGTCTTTCATTGATTTCCATGATT | + |
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Preference number: 3 (lower is better) Translates to: TVASISSMAASL*ASASLSLISMI Trigger: AATCATGGAAATCAATGAAAGACTCGCAGACGCCCAAAGTGAGGCCGCCATGGAAGAGATAGAAGCCACTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144850.8 |
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| 3UTR GCA 72 bp | TTCTATCTCTTCCATGGCGGCCTCACTTTGGGCGTCTaGGAGTCTTTCATTGATTTCCATGATTTCCACAAG | + |
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Preference number: 3 (lower is better) Translates to: FYLFHGGLTLGV*ESFIDFHDFHK Trigger: CTTGTGGAAATCATGGAAATCAATGAAAGACTCGCAGACGCCCAAAGTGAGGCCGCCATGGAAGAGATAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144850.8 |
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| 3UTR GCA 72 bp | ATTGATTTCCATGATTTCCACAAGGAACTGACTGTCTaGTTTGTAATCTGTCCCTTCAGGAATTTCTATTCC | + |
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Preference number: 3 (lower is better) Translates to: IDFHDFHKELTV*FVICPFRNFYS Trigger: GGAATAGAAATTCCTGAAGGGACAGATTACAAAGCAGACAGTCAGTTCCTTGTGGAAATCATGGAAATCAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144850.8 |
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| 3UTR TCA 72 bp | TTTAAGTTAGCAACTAGAGAGGAGTCTTGCTTAGCTTaGTCTTTTCTTCTATGTTCGAAAAGTATCTCATCT | + |
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Preference number: 3 (lower is better) Translates to: FKLATREESCLA*SFLLCSKSISS Trigger: AGATGAGATACTTTTCGAACATAGAAGAAAAGATCAAGCTAAGCAAGACTCCTCTCTAGTTGCTAACTTAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| 3UTR CAA 72 bp | GACAGTGGCTTCTATCTCTTCCATGGCGGCCTCACTTaGGGCGTCTGCGAGTCTTTCATTGATTTCCATGAT | + |
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Preference number: 4 (lower is better) Translates to: DSGFYLFHGGLT*GVCESFIDFHD Trigger: ATCATGGAAATCAATGAAAGACTCGCAGACGCCCAAAGTGAGGCCGCCATGGAAGAGATAGAAGCCACTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144850.8 |
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| CDS-3UTR GCA 90 bp | TCCATGGCGGCCTCACTTTGGGCGTCTGCGAGTCTTTCATTGATTTCCATGATTTTCACCAGGGTGGAGTaGTTGTCAGAGAAGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: SMAASLWASASLSLISMIFTRVE*LSEKCF Trigger: AAAACACTTCTCTGACAAGCACTCCACCCTGGTGAA...AATCATGGAAATCAATGAAAGACTCGCAGACGCCCAAAGTGAGGCCGCCATGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144850.8 |
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| CDS-3UTR TCA 90 bp | TTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCCAGAGCGCGGCAGTGTaGGCAGAAGAACTCATCCCC | + |
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Preference number: 4 (lower is better) Translates to: FFYVRKVSHLCQEFLGFFQSAAV*AEELIP Trigger: GGGGATGAGTTCTTCTGCTCACACTGCCGCGCTCTG...GAAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS-3UTR GCA 90 bp | TTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCAAAGGGTGGACAAGCCGCTaGAGTTGCTGGTACCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: FYVRKVSHLCQEFLGFFKGWTSR*SCWYLC Trigger: GCACAGGTACCAGCAACTGCAGCGGCTTGTCCACCC...TTTGAAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS-3UTR TCA 90 bp | CTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCAATGCTGGTACCTGTGCTaGAGTTTCGTAACGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: LLCSKSISSLSGVPWLFQCWYLC*SFVTST Trigger: GGTGGACGTTACGAAACTTCAGCACAGGTACCAGCA...TTGAAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS-3UTR CCA 90 bp | CTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCAAAGTCTGAAGAAATCTGGGTaGACAAGCCGCTGCAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: LCSKSISSLSGVPWLFQSLKKSG*TSRCSC Trigger: GCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAG...ACTTTGAAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS-3UTR CCA 90 bp | ATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCAAAGTCATTGGCTGAAGAAATCTaGGTGGACAAGCCGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: MFEKYLIFVRSSLAFSKSLAEEI*VDKPLQ Trigger: CTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAA...TGACTTTGAAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS-3UTR CCA 90 bp | GATCTTTTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCCAAGATATAGTCCTCTaGTCAGGGGAGCCTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: DLFFYVRKVSHLCQEFLGQDIVL*SGEPEE Trigger: CTCTTCAGGCTCCCCTGACCAGAGGACTATATCTTG...GCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAAAAGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| CDS-3UTR CCA 90 bp | TCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCAAAGCATCATTCACCAGGGTaGAGTGCTTGTCAGAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: SMFEKYLIFVRSSLAFSKHHSPG*SACQRS Trigger: ACTTCTCTGACAAGCACTCCACCCTGGTGAATGATG...CTTTGAAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| CDS-3UTR CCA 90 bp | TTGATCTTTTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGCATCATTCACCAGGGTaGAGTGCTTGTCAGAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: LIFSSMFEKYLIFVRSSLHHSPG*SACQRS Trigger: ACTTCTCTGACAAGCACTCCACCCTGGTGAATGATG...CAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAAAAGATCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| CDS-3UTR TCA 90 bp | TTTTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCTGAGACTTTTGGCTaGAGAAATCTGGGTGGACAA | + |
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Preference number: 4 (lower is better) Translates to: FSSMFEKYLIFVRSSLAFSETFG*RNLGGQ Trigger: TTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAGA...AAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS-3UTR GCA 90 bp | TTTTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTTCACCAGGGTGGAGTaGTTGTCAGAGAAGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: FSSMFEKYLIFVRSSLAFFTRVE*LSEKCF Trigger: AAAACACTTCTCTGACAAGCACTCCACCCTGGTGAA...AAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAAAA 39% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| CDS-3UTR TCA 90 bp | CTTTTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTAAGTGTTTTTCAGTCTaGGACTTTTGGCTGAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LFFYVRKVSHLCQEFLGFKCFSV*DFWLKK Trigger: TTTCTTCAGCCAAAAGTCTCAGACTGAAAAACACTT...AAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS GCA 90 bp | AGTTCCAGCACTGCGGTGCAATGCTCTTCCCCGCGGCGGCATTGCTaGCCAAAAGTCTCCTTCCCAGGAACCCTGCCAGCCGCACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: SSSTAVQCSSPRRHC*PKVSFPGTLPAAPP Trigger: GGGAGGTGCGGCTGGCAGGGTTCCTGGGAAGGAGACTTTTGGGCAGCAATGCCGCCGCGGGGAAGAGCATTGCACCGCAGTGCTGGAACT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS GCA 90 bp | CGCAGTTCCAGCACTGCGGTGCAATGCTCTTCCCCGCGGCGGCATTaGTGCCCAAAAGTCTCCTTCCCAGGAACCCTGCCAGCCGCACCT | + |
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Preference number: 5 (lower is better) Translates to: RSSSTAVQCSSPRRH*CPKVSFPGTLPAAP Trigger: AGGTGCGGCTGGCAGGGTTCCTGGGAAGGAGACTTTTGGGCAGCAATGCCGCCGCGGGGAAGAGCATTGCACCGCAGTGCTGGAACTGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS TCA 90 bp | GAAGTAGTCACGAGTGGGGTCAGGAGGCTGCAGAGCGCGGCAGTGTaGGCAGAAGAACTCATCCCCACACCCGACTTCCCTTGCGTGACC | + |
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Preference number: 5 (lower is better) Translates to: EVVTSGVRRLQSAAV*AEELIPTPDFPCVT Trigger: GGTCACGCAAGGGAAGTCGGGTGTGGGGATGAGTTCTTCTGCTCACACTGCCGCGCTCTGCAGCCTCCTGACCCCACTCGTGACTACTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS TCA 90 bp | AAGAAATCTGGGTGGACAAGCCGCTGCAGTTGCTGGTACCTGTGCTaGAGTTTCGTAACGTCCACCCTGAAGGAGCGGTTGCAGTTCATG | + |
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Preference number: 5 (lower is better) Translates to: KKSGWTSRCSCWYLC*SFVTSTLKERLQFM Trigger: CATGAACTGCAACCGCTCCTTCAGGGTGGACGTTACGAAACTTCAGCACAGGTACCAGCAACTGCAGCGGCTTGTCCACCCAGATTTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS TCA 90 bp | TGGAGTGCTTGTCAGAGAAGTGTTTTTCAGTCTGAGACTTTTGGCTaGAGAAATCTGGGTGGACAAGCCGCTGCAGTTGCTGGTACCTGT | + |
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Preference number: 5 (lower is better) Translates to: WSACQRSVFQSETFG*RNLGGQAAAVAGTC Trigger: ACAGGTACCAGCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAGACTGAAAAACACTTCTCTGACAAGCACTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS CCA 90 bp | GTCAGAGAAGTGTTTTTCAGTCTGAGACTTTTGGCTGAAGAAATCTaGGTGGACAAGCCGCTGCAGTTGCTGGTACCTGTGCTGAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: VREVFFSLRLLAEEI*VDKPLQLLVPVLKF Trigger: AAACTTCAGCACAGGTACCAGCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAGACTGAAAAACACTTCTCTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS-3UTR CAA 90 bp | GTCTTGCTTAGCTTGATCTTTTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCGACAAGCCGCTGCAGTaGCTGGTACCTGTGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: VLLSLIFSSMFEKYLIFVDKPLQ*LVPVLK Trigger: CTTCAGCACAGGTACCAGCAACTGCAGCGGCTTGTC...GACAAAGATGAGATACTTTTCGAACATAGAAGAAAAGATCAAGCTAAGCAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000145318.2 |
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| CDS GCA 90 bp | GAGTCTTTCATTGATTTCCATGATTTCCACAAGGAACTGACTGTCTaGTTTGTAATCTGTCCCTTCAGGAATTTCTATTCCCTGGAGCTT | + |
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Preference number: 5 (lower is better) Translates to: ESFIDFHDFHKELTV*FVICPFRNFYSLEL Trigger: AAGCTCCAGGGAATAGAAATTCCTGAAGGGACAGATTACAAAGCAGACAGTCAGTTCCTTGTGGAAATCATGGAAATCAATGAAAGACTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS-3UTR CAA 90 bp | ATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTCAAAGTCAACCAGGGTGGAGTGCTaGTCAGAGAAGTGTTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: MFEKYLIFVRSSLAFSKSTRVEC*SEKCFS Trigger: TGAAAAACACTTCTCTGACAAGCACTCCACCCTGGT...TGACTTTGAAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| CDS-3UTR CAA 90 bp | TTTCTTCTATGTTCGAAAAGTATCTCATCTTTGTCAGGAGTTCCTTGGCTTTTTACCAGGGTGGAGTGCTaGTCAGAGAAGTGTTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: FLLCSKSISSLSGVPWLFTRVEC*SEKCFS Trigger: TGAAAAACACTTCTCTGACAAGCACTCCACCCTGGT...AAAAAGCCAAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| CDS CAA 90 bp | CCGCAGTTCCAGCACTGCGGTGCAATGCTCTTCCCCGCGGCGGCATaGCTGCCCAAAAGTCTCCTTCCCAGGAACCCTGCCAGCCGCACC | + |
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Preference number: 6 (lower is better) Translates to: PQFQHCGAMLFPAAA*LPKSLLPRNPASRT Trigger: GGTGCGGCTGGCAGGGTTCCTGGGAAGGAGACTTTTGGGCAGCAATGCCGCCGCGGGGAAGAGCATTGCACCGCAGTGCTGGAACTGCGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS GCA 72 bp | GACTTCCCTTGCGTGACCGCAGTTCCAGCACTGCGGTaGAATGCTCTTCCCCGCGGCGGCATTGCTGCCCAA | + |
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Preference number: 6 (lower is better) Translates to: DFPCVTAVPALR*NALPRGGIAAQ Trigger: TTGGGCAGCAATGCCGCCGCGGGGAAGAGCATTGCACCGCAGTGCTGGAACTGCGGTCACGCAAGGGAAGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS TCA 72 bp | ACGAGTGGGGTCAGGAGGCTGCAGAGCGCGGCAGTGTaGGCAGAAGAACTCATCCCCACACCCGACTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: TSGVRRLQSAAV*AEELIPTPDFP Trigger: AGGGAAGTCGGGTGTGGGGATGAGTTCTTCTGCTCACACTGCCGCGCTCTGCAGCCTCCTGACCCCACTCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS GCA 72 bp | AGCACTGCGGTGCAATGCTCTTCCCCGCGGCGGCATTaGTGCCCAAAAGTCTCCTTCCCAGGAACCCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: STAVQCSSPRRH*CPKVSFPGTLP Trigger: TGGCAGGGTTCCTGGGAAGGAGACTTTTGGGCAGCAATGCCGCCGCGGGGAAGAGCATTGCACCGCAGTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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| CDS TCA 72 bp | GGGTGGACAAGCCGCTGCAGTTGCTGGTACCTGTGCTaGAGTTTCGTAACGTCCACCCTGAAGGAGCGGTTG | + |
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Preference number: 6 (lower is better) Translates to: GWTSRCSCWYLC*SFVTSTLKERL Trigger: CAACCGCTCCTTCAGGGTGGACGTTACGAAACTTCAGCACAGGTACCAGCAACTGCAGCGGCTTGTCCACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS CAA 72 bp | TTGGCTGAAGAAATCTGGGTGGACAAGCCGCTGCAGTaGCTGGTACCTGTGCTGAAGTTTCGTAACGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LAEEIWVDKPLQ*LVPVLKFRNVH Trigger: GTGGACGTTACGAAACTTCAGCACAGGTACCAGCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS CAA 90 bp | CTGAGACTTTTGGCTGAAGAAATCTGGGTGGACAAGCCGCTGCAGTaGCTGGTACCTGTGCTGAAGTTTCGTAACGTCCACCCTGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: LRLLAEEIWVDKPLQ*LVPVLKFRNVHPEG Trigger: TCCTTCAGGGTGGACGTTACGAAACTTCAGCACAGGTACCAGCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS CCA 72 bp | GTGTTTTTCAGTCTGAGACTTTTGGCTGAAGAAATCTaGGTGGACAAGCCGCTGCAGTTGCTGGTACCTGTG | + |
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Preference number: 6 (lower is better) Translates to: VFFSLRLLAEEI*VDKPLQLLVPV Trigger: CACAGGTACCAGCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAGACTGAAAAACAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS TCA 72 bp | TGTCAGAGAAGTGTTTTTCAGTCTGAGACTTTTGGCTaGAGAAATCTGGGTGGACAAGCCGCTGCAGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: CQRSVFQSETFG*RNLGGQAAAVA Trigger: AGCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAGACTGAAAAACACTTCTCTGACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS TCA 72 bp | AGGGTGGAGTGCTTGTCAGAGAAGTGTTTTTCAGTCTaGGACTTTTGGCTGAAGAAATCTGGGTGGACAAGC | + |
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Preference number: 6 (lower is better) Translates to: RVECLSEKCFSV*DFWLKKSGWTS Trigger: GCTTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAGACTGAAAAACACTTCTCTGACAAGCACTCCACCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056937.12 ENSMUST00000145318.2 |
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| CDS CCA 72 bp | GAGCCTGAAGAGTCTTATAGGCATCATTCACCAGGGTaGAGTGCTTGTCAGAGAAGTGTTTTTCAGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: EPEESYRHHSPG*SACQRSVFQSE Trigger: CTCAGACTGAAAAACACTTCTCTGACAAGCACTCCACCCTGGTGAATGATGCCTATAAGACTCTTCAGGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000056937.12 ENSMUST00000144850.8 ENSMUST00000145318.2 |
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| CDS CCA 72 bp | TTTCTATTCCCTGGAGCTTTAGAAGATATAGTCCTCTaGTCAGGGGAGCCTGAAGAGTCTTATAGGCATCAT | + |
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Preference number: 6 (lower is better) Translates to: FLFPGALEDIVL*SGEPEESYRHH Trigger: ATGATGCCTATAAGACTCTTCAGGCTCCCCTGACCAGAGGACTATATCTTCTAAAGCTCCAGGGAATAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056937.12 |
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