RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HSBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031839

Ensembl transcript IDs: ENSMUST00000034300.8, ENSMUST00000212468.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCTCTTCCCTTTCAGTCAGTAGCTTGAAGGGAGGACAGGGTCACTaGGCTCTGATACCCTGCCGGATGAGCATGGCAGGTCCTACCAAC +
Preference number: 1 (lower is better)
Translates to: VSSLSVSSLKGGQGH*ALIPCRMSMAGPTN
Trigger: GTTGGTAGGACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGACTGAAAGGGAAGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR GCA 90 bp GTCAGTAGCTTGAAGGGAGGACAGGGTCACTGGGCTCTGATACCCTaGCGGATGAGCATGGCAGGTCCTACCAACGCTACTAGAATCTCA +
Preference number: 1 (lower is better)
Translates to: VSSLKGGQGHWALIP*RMSMAGPTNATRIS
Trigger: TGAGATTCTAGTAGCGTTGGTAGGACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR TCA 90 bp ACTTCTGACACTCCAGTGGCGGGCGGCTCAACAGTCACTTTGCACTaGAAATCAAAGAACCCTACACACTCACGGCTCACGAACGGCTTC +
Preference number: 1 (lower is better)
Translates to: TSDTPVAGGSTVTLH*KSKNPTHSRLTNGF
Trigger: GAAGCCGTTCGTGAGCCGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR GCA 90 bp GAAGTACTTCTGACACTCCAGTGGCGGGCGGCTCAACAGTCACTTTaGACTGAAAATCAAAGAACCCTACACACTCACGGCTCACGAACG +
Preference number: 1 (lower is better)
Translates to: EVLLTLQWRAAQQSL*TENQRTLHTHGSRT
Trigger: CGTTCGTGAGCCGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR TCA 90 bp CACAAACAACTATTAAATGTCCTGGGCCATCTGGAGAAGTACTTCTaGCACTCCAGTGGCGGGCGGCTCAACAGTCACTTTGCACTGAAA +
Preference number: 1 (lower is better)
Translates to: HKQLLNVLGHLEKYF*HSSGGRLNSHFALK
Trigger: TTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTCTCCAGATGGCCCAGGACATTTAATAGTTGTTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR CCA 90 bp ATTAAATGTCCTGGGCCATCTGGAGAAGTACTTCTGACACTCCAGTaGCGGGCGGCTCAACAGTCACTTTGCACTGAAAATCAAAGAACC +
Preference number: 1 (lower is better)
Translates to: IKCPGPSGEVLLTLQ*RAAQQSLCTENQRT
Trigger: GGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTCTCCAGATGGCCCAGGACATTTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR CAA 90 bp TGGGCTCACTTGGGTCTTTTGGTCTCTTCCCTTTCAGTCAGTAGCTaGAAGGGAGGACAGGGTCACTGGGCTCTGATACCCTGCCGGATG +
Preference number: 2 (lower is better)
Translates to: WAHLGLLVSSLSVSS*KGGQGHWALIPCRM
Trigger: CATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGACTGAAAGGGAAGAGACCAAAAGACCCAAGTGAGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR-3UTR CCA 90 bp ACGAACGGCTTCTGCCAGGGGAGGGGCTGTGGTCACGTGATCACGAGTACTCTGTTGCAGAAAGCCACTTaGTTTTTGTCTTGGCTCGGG +
Preference number: 2 (lower is better)
Translates to: TNGFCQGRGCGHVITSTLLQKAT*FLSWLG
Trigger: CCCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAA...CAGAGTACTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR-3UTR CCA 90 bp ATGGCAGGTCCTACCAACGCTACTAGAATCTCATGCAAAACTCTGAGAGACGCTACCACAGAGGAGCAGTaGGGAGGGGAACTCAGAAAA +
Preference number: 2 (lower is better)
Translates to: MAGPTNATRISCKTLRDATTEEQ*GGELRK
Trigger: TTTTCTGAGTTCCCCTCCCCACTGCTCCTCTGTGGT...AGCGTCTCTCAGAGTTTTGCATGAGATTCTAGTAGCGTTGGTAGGACCTGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR-3UTR CCA 90 bp ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTATTGCAGAAAGCCACTTaGTTTTTGTCTTGGCTCGGG +
Preference number: 2 (lower is better)
Translates to: MGCRGTLGYAGCDKNARLLQKAT*FLSWLG
Trigger: CCCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAA...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
3UTR-3UTR TCA 90 bp CCTTCTAAGTCATCAAAACTGGCTTTGAGGCTAAGCCTCCAGACACCAGAATCCACAGTCACTTTGCACTaGAAATCAAAGAACCCTACA +
Preference number: 2 (lower is better)
Translates to: PSKSSKLALRLSLQTPESTVTLH*KSKNPT
Trigger: TGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGT...GGATTCTGGTGTCTGGAGGCTTAGCCTCAAAGCCAGTTTTGATGACTTAGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR GCA 72 bp TTGAAGGGAGGACAGGGTCACTGGGCTCTGATACCCTaGCGGATGAGCATGGCAGGTCCTACCAACGCTACT +
Preference number: 3 (lower is better)
Translates to: LKGGQGHWALIP*RMSMAGPTNAT
Trigger: AGTAGCGTTGGTAGGACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR CCA 72 bp ACGGCTCACGAACGGCTTCTGCCAGGGGAGGGGCTGTaGTCACGTGATCACGAGTACTCTGCCACTTTATCA +
Preference number: 3 (lower is better)
Translates to: TAHERLLPGEGL*SRDHEYSATLS
Trigger: TGATAAAGTGGCAGAGTACTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCGTGAGCCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR TCA 72 bp CGAACGGCTTCTGCCAGGGGAGGGGCTGTGGTCACGTaGTCACGAGTACTCTGCCACTTTATCACACAGCAA +
Preference number: 3 (lower is better)
Translates to: RTASARGGAVVT*SRVLCHFITQQ
Trigger: TTGCTGTGTGATAAAGTGGCAGAGTACTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR CCA 72 bp CTTTCAGTCAGTAGCTTGAAGGGAGGACAGGGTCACTaGGCTCTGATACCCTGCCGGATGAGCATGGCAGGT +
Preference number: 3 (lower is better)
Translates to: LSVSSLKGGQGH*ALIPCRMSMAG
Trigger: ACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGACTGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR TCA 72 bp ACTCCAGTGGCGGGCGGCTCAACAGTCACTTTGCACTaGAAATCAAAGAACCCTACACACTCACGGCTCACG +
Preference number: 3 (lower is better)
Translates to: TPVAGGSTVTLH*KSKNPTHSRLT
Trigger: CGTGAGCCGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR TCA 72 bp ACCTCCCACAAGTCAAAGGGCATTTTTCAGCCTTGCTaGCAGGGCTGGGCTCACTTGGGTCTTTTGGTCTCT +
Preference number: 3 (lower is better)
Translates to: TSHKSKGIFQPC*QGWAHLGLLVS
Trigger: AGAGACCAAAAGACCCAAGTGAGCCCAGCCCTGTCAGCAAGGCTGAAAAATGCCCTTTGACTTGTGGGAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR TCA 72 bp CTATTAAATGTCCTGGGCCATCTGGAGAAGTACTTCTaGCACTCCAGTGGCGGGCGGCTCAACAGTCACTTT +
Preference number: 3 (lower is better)
Translates to: LLNVLGHLEKYF*HSSGGRLNSHF
Trigger: AAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTCTCCAGATGGCCCAGGACATTTAATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
3UTR-3UTR CAA 90 bp ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTAGTTGCAGAAAGCCACTaGGTTTTTGTCTTGGCTCGG +
Preference number: 3 (lower is better)
Translates to: MGCRGTLGYAGCDKNARLVAESH*VFVLAR
Trigger: CCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAAC...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
3UTR-3UTR CAA 90 bp ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTAAAAGCCACTTGGTTTTaGTCTTGGCTCGGGACAACA +
Preference number: 3 (lower is better)
Translates to: MGCRGTLGYAGCDKNARLKATWF*SWLGTT
Trigger: TGTTGTCCCGAGCCAAGACAAAAACCAAGTGGCTTT...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
3UTR-3UTR CAA 90 bp TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGGTTGCAGAAAGCCACTaGGTTTTTGTCTTGGCTCGG +
Preference number: 3 (lower is better)
Translates to: LIINRTDQDVKIASLRDGVAESH*VFVLAR
Trigger: CCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAAC...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
3UTR-3UTR CAA 90 bp TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGAAAGCCACTTGGTTTTaGTCTTGGCTCGGGACAACA +
Preference number: 3 (lower is better)
Translates to: LIINRTDQDVKIASLRDGKATWF*SWLGTT
Trigger: TGTTGTCCCGAGCCAAGACAAAAACCAAGTGGCTTT...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
CDS-3UTR CCA 90 bp ACGGCTCACGAACGGCTTCTGCCAGGGGAGGGGCTGTGGTCACGTGATCACGAGTCTTCTACTCCAGCCTaGGTCATGAGGTCAGCGATA +
Preference number: 4 (lower is better)
Translates to: TAHERLLPGEGLWSRDHESSTPA*VMRSAI
Trigger: TATCGCTGACCTCATGACCCAGGCTGGAGTAGAAGA...CTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCGTGAGCCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
CDS-3UTR TCA 90 bp CCTTCTAAGTCATCAAAACTGGCTTTGAGGCTAAGCCTCCAGACACCAGAATCCCTCCAGCCTGGGTCATaGGGTCAGCGATATTCTTCT +
Preference number: 4 (lower is better)
Translates to: PSKSSKLALRLSLQTPESLQPGS*GQRYSS
Trigger: AGAAGAATATCGCTGACCTCATGACCCAGGCTGGAG...GGATTCTGGTGTCTGGAGGCTTAGCCTCAAAGCCAGTTTTGATGACTTAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
CDS-3UTR GCA 90 bp ATCACGAGTACTCTGCCACTTTATCACACAGCAACTACCACAGAGGAGCAGTGGAACTTGTCTTGCATCTaGTGCAAGAGCGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: ITSTLPLYHTATTTEEQWNLSCI*CKSVST
Trigger: GGTGGAGACGCTCTTGCAGCAGATGCAAGACAAGTT...CCACTGCTCCTCTGTGGTAGTTGCTGTGTGATAAAGTGGCAGAGTACTCGTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
CDS-3UTR GCA 90 bp ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTAAACTTGTCTTGCATCTaGTGCAAGAGCGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: MGCRGTLGYAGCDKNARLNLSCI*CKSVST
Trigger: GGTGGAGACGCTCTTGCAGCAGATGCAAGACAAGTT...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
CDS-3UTR CCA 90 bp ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTATCTTCTACTCCAGCCTaGGTCATGAGGTCAGCGATA +
Preference number: 4 (lower is better)
Translates to: MGCRGTLGYAGCDKNARLSSTPA*VMRSAI
Trigger: TATCGCTGACCTCATGACCCAGGCTGGAGTAGAAGA...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
CDS-3UTR TCA 90 bp GGGCGGCTCAACAGTCACTTTGCACTGAAAATCAAAGAACCCTACACACTCACGTGGTCTGACATGATCTaGAACTTGTCTTGCATCTGC +
Preference number: 4 (lower is better)
Translates to: GRLNSHFALKIKEPYTLTWSDMI*NLSCIC
Trigger: GCAGATGCAAGACAAGTTTCAGATCATGTCAGACCA...CGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
CDS-3UTR TCA 90 bp ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTATGGTCTGACATGATCTaGAACTTGTCTTGCATCTGC +
Preference number: 4 (lower is better)
Translates to: MGCRGTLGYAGCDKNARLWSDMI*NLSCIC
Trigger: GCAGATGCAAGACAAGTTTCAGATCATGTCAGACCA...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
CDS-3UTR TCA 90 bp CCTTCTAAGTCATCAAAACTGGCTTTGAGGCTAAGCCTCCAGACACCAGAATCCTCCGATGATCTGGTCTaGCATGATCTGAAACTTGTC +
Preference number: 4 (lower is better)
Translates to: PSKSSKLALRLSLQTPESSDDLV*HDLKLV
Trigger: GACAAGTTTCAGATCATGTCAGACCAGATCATCGGA...GGATTCTGGTGTCTGGAGGCTTAGCCTCAAAGCCAGTTTTGATGACTTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
CDS-3UTR TCA 90 bp TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGTCCGATGATCTGGTCTaGCATGATCTGAAACTTGTC +
Preference number: 4 (lower is better)
Translates to: LIINRTDQDVKIASLRDGSDDLV*HDLKLV
Trigger: GACAAGTTTCAGATCATGTCAGACCAGATCATCGGA...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2
CDS-3UTR CAA 90 bp ATGGCAGGTCCTACCAACGCTACTAGAATCTCATGCAAAACTCTGAGAGACGCTGATCTGAAACTTGTCTaGCATCTGCTGCAAGAGCGT +
Preference number: 5 (lower is better)
Translates to: MAGPTNATRISCKTLRDADLKLV*HLLQER
Trigger: ACGCTCTTGCAGCAGATGCAAGACAAGTTTCAGATC...AGCGTCTCTCAGAGTTTTGCATGAGATTCTAGTAGCGTTGGTAGGACCTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034300.8
CDS-3UTR CAA 90 bp TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGGATCTGAAACTTGTCTaGCATCTGCTGCAAGAGCGT +
Preference number: 5 (lower is better)
Translates to: LIINRTDQDVKIASLRDGDLKLV*HLLQER
Trigger: ACGCTCTTGCAGCAGATGCAAGACAAGTTTCAGATC...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034300.8
ENSMUST00000212468.2