Pregenerated sensors for HSBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031839Ensembl transcript IDs: ENSMUST00000034300.8, ENSMUST00000212468.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | GTCTCTTCCCTTTCAGTCAGTAGCTTGAAGGGAGGACAGGGTCACTaGGCTCTGATACCCTGCCGGATGAGCATGGCAGGTCCTACCAAC | + |
Preference number: 1 (lower is better) Translates to: VSSLSVSSLKGGQGH*ALIPCRMSMAGPTN Trigger: GTTGGTAGGACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGACTGAAAGGGAAGAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR GCA 90 bp | GTCAGTAGCTTGAAGGGAGGACAGGGTCACTGGGCTCTGATACCCTaGCGGATGAGCATGGCAGGTCCTACCAACGCTACTAGAATCTCA | + |
Preference number: 1 (lower is better) Translates to: VSSLKGGQGHWALIP*RMSMAGPTNATRIS Trigger: TGAGATTCTAGTAGCGTTGGTAGGACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR TCA 90 bp | ACTTCTGACACTCCAGTGGCGGGCGGCTCAACAGTCACTTTGCACTaGAAATCAAAGAACCCTACACACTCACGGCTCACGAACGGCTTC | + |
Preference number: 1 (lower is better) Translates to: TSDTPVAGGSTVTLH*KSKNPTHSRLTNGF Trigger: GAAGCCGTTCGTGAGCCGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR GCA 90 bp | GAAGTACTTCTGACACTCCAGTGGCGGGCGGCTCAACAGTCACTTTaGACTGAAAATCAAAGAACCCTACACACTCACGGCTCACGAACG | + |
Preference number: 1 (lower is better) Translates to: EVLLTLQWRAAQQSL*TENQRTLHTHGSRT Trigger: CGTTCGTGAGCCGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR TCA 90 bp | CACAAACAACTATTAAATGTCCTGGGCCATCTGGAGAAGTACTTCTaGCACTCCAGTGGCGGGCGGCTCAACAGTCACTTTGCACTGAAA | + |
Preference number: 1 (lower is better) Translates to: HKQLLNVLGHLEKYF*HSSGGRLNSHFALK Trigger: TTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTCTCCAGATGGCCCAGGACATTTAATAGTTGTTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR CCA 90 bp | ATTAAATGTCCTGGGCCATCTGGAGAAGTACTTCTGACACTCCAGTaGCGGGCGGCTCAACAGTCACTTTGCACTGAAAATCAAAGAACC | + |
Preference number: 1 (lower is better) Translates to: IKCPGPSGEVLLTLQ*RAAQQSLCTENQRT Trigger: GGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTCTCCAGATGGCCCAGGACATTTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR CAA 90 bp | TGGGCTCACTTGGGTCTTTTGGTCTCTTCCCTTTCAGTCAGTAGCTaGAAGGGAGGACAGGGTCACTGGGCTCTGATACCCTGCCGGATG | + |
Preference number: 2 (lower is better) Translates to: WAHLGLLVSSLSVSS*KGGQGHWALIPCRM Trigger: CATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGACTGAAAGGGAAGAGACCAAAAGACCCAAGTGAGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR-3UTR CCA 90 bp | ACGAACGGCTTCTGCCAGGGGAGGGGCTGTGGTCACGTGATCACGAGTACTCTGTTGCAGAAAGCCACTTaGTTTTTGTCTTGGCTCGGG | + |
Preference number: 2 (lower is better) Translates to: TNGFCQGRGCGHVITSTLLQKAT*FLSWLG Trigger: CCCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAA...CAGAGTACTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR-3UTR CCA 90 bp | ATGGCAGGTCCTACCAACGCTACTAGAATCTCATGCAAAACTCTGAGAGACGCTACCACAGAGGAGCAGTaGGGAGGGGAACTCAGAAAA | + |
Preference number: 2 (lower is better) Translates to: MAGPTNATRISCKTLRDATTEEQ*GGELRK Trigger: TTTTCTGAGTTCCCCTCCCCACTGCTCCTCTGTGGT...AGCGTCTCTCAGAGTTTTGCATGAGATTCTAGTAGCGTTGGTAGGACCTGCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR-3UTR CCA 90 bp | ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTATTGCAGAAAGCCACTTaGTTTTTGTCTTGGCTCGGG | + |
Preference number: 2 (lower is better) Translates to: MGCRGTLGYAGCDKNARLLQKAT*FLSWLG Trigger: CCCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAA...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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3UTR-3UTR TCA 90 bp | CCTTCTAAGTCATCAAAACTGGCTTTGAGGCTAAGCCTCCAGACACCAGAATCCACAGTCACTTTGCACTaGAAATCAAAGAACCCTACA | + |
Preference number: 2 (lower is better) Translates to: PSKSSKLALRLSLQTPESTVTLH*KSKNPT Trigger: TGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGT...GGATTCTGGTGTCTGGAGGCTTAGCCTCAAAGCCAGTTTTGATGACTTAGAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR GCA 72 bp | TTGAAGGGAGGACAGGGTCACTGGGCTCTGATACCCTaGCGGATGAGCATGGCAGGTCCTACCAACGCTACT | + |
Preference number: 3 (lower is better) Translates to: LKGGQGHWALIP*RMSMAGPTNAT Trigger: AGTAGCGTTGGTAGGACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR CCA 72 bp | ACGGCTCACGAACGGCTTCTGCCAGGGGAGGGGCTGTaGTCACGTGATCACGAGTACTCTGCCACTTTATCA | + |
Preference number: 3 (lower is better) Translates to: TAHERLLPGEGL*SRDHEYSATLS Trigger: TGATAAAGTGGCAGAGTACTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCGTGAGCCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR TCA 72 bp | CGAACGGCTTCTGCCAGGGGAGGGGCTGTGGTCACGTaGTCACGAGTACTCTGCCACTTTATCACACAGCAA | + |
Preference number: 3 (lower is better) Translates to: RTASARGGAVVT*SRVLCHFITQQ Trigger: TTGCTGTGTGATAAAGTGGCAGAGTACTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR CCA 72 bp | CTTTCAGTCAGTAGCTTGAAGGGAGGACAGGGTCACTaGGCTCTGATACCCTGCCGGATGAGCATGGCAGGT | + |
Preference number: 3 (lower is better) Translates to: LSVSSLKGGQGH*ALIPCRMSMAG Trigger: ACCTGCCATGCTCATCCGGCAGGGTATCAGAGCCCAGTGACCCTGTCCTCCCTTCAAGCTACTGACTGAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR TCA 72 bp | ACTCCAGTGGCGGGCGGCTCAACAGTCACTTTGCACTaGAAATCAAAGAACCCTACACACTCACGGCTCACG | + |
Preference number: 3 (lower is better) Translates to: TPVAGGSTVTLH*KSKNPTHSRLT Trigger: CGTGAGCCGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCCGCCACTGGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR TCA 72 bp | ACCTCCCACAAGTCAAAGGGCATTTTTCAGCCTTGCTaGCAGGGCTGGGCTCACTTGGGTCTTTTGGTCTCT | + |
Preference number: 3 (lower is better) Translates to: TSHKSKGIFQPC*QGWAHLGLLVS Trigger: AGAGACCAAAAGACCCAAGTGAGCCCAGCCCTGTCAGCAAGGCTGAAAAATGCCCTTTGACTTGTGGGAGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR TCA 72 bp | CTATTAAATGTCCTGGGCCATCTGGAGAAGTACTTCTaGCACTCCAGTGGCGGGCGGCTCAACAGTCACTTT | + |
Preference number: 3 (lower is better) Translates to: LLNVLGHLEKYF*HSSGGRLNSHF Trigger: AAAGTGACTGTTGAGCCGCCCGCCACTGGAGTGTCAGAAGTACTTCTCCAGATGGCCCAGGACATTTAATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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3UTR-3UTR CAA 90 bp | ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTAGTTGCAGAAAGCCACTaGGTTTTTGTCTTGGCTCGG | + |
Preference number: 3 (lower is better) Translates to: MGCRGTLGYAGCDKNARLVAESH*VFVLAR Trigger: CCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAAC...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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3UTR-3UTR CAA 90 bp | ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTAAAAGCCACTTGGTTTTaGTCTTGGCTCGGGACAACA | + |
Preference number: 3 (lower is better) Translates to: MGCRGTLGYAGCDKNARLKATWF*SWLGTT Trigger: TGTTGTCCCGAGCCAAGACAAAAACCAAGTGGCTTT...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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3UTR-3UTR CAA 90 bp | TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGGTTGCAGAAAGCCACTaGGTTTTTGTCTTGGCTCGG | + |
Preference number: 3 (lower is better) Translates to: LIINRTDQDVKIASLRDGVAESH*VFVLAR Trigger: CCGAGCCAAGACAAAAACCAAGTGGCTTTCTGCAAC...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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3UTR-3UTR CAA 90 bp | TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGAAAGCCACTTGGTTTTaGTCTTGGCTCGGGACAACA | + |
Preference number: 3 (lower is better) Translates to: LIINRTDQDVKIASLRDGKATWF*SWLGTT Trigger: TGTTGTCCCGAGCCAAGACAAAAACCAAGTGGCTTT...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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CDS-3UTR CCA 90 bp | ACGGCTCACGAACGGCTTCTGCCAGGGGAGGGGCTGTGGTCACGTGATCACGAGTCTTCTACTCCAGCCTaGGTCATGAGGTCAGCGATA | + |
Preference number: 4 (lower is better) Translates to: TAHERLLPGEGLWSRDHESSTPA*VMRSAI Trigger: TATCGCTGACCTCATGACCCAGGCTGGAGTAGAAGA...CTCGTGATCACGTGACCACAGCCCCTCCCCTGGCAGAAGCCGTTCGTGAGCCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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CDS-3UTR TCA 90 bp | CCTTCTAAGTCATCAAAACTGGCTTTGAGGCTAAGCCTCCAGACACCAGAATCCCTCCAGCCTGGGTCATaGGGTCAGCGATATTCTTCT | + |
Preference number: 4 (lower is better) Translates to: PSKSSKLALRLSLQTPESLQPGS*GQRYSS Trigger: AGAAGAATATCGCTGACCTCATGACCCAGGCTGGAG...GGATTCTGGTGTCTGGAGGCTTAGCCTCAAAGCCAGTTTTGATGACTTAGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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CDS-3UTR GCA 90 bp | ATCACGAGTACTCTGCCACTTTATCACACAGCAACTACCACAGAGGAGCAGTGGAACTTGTCTTGCATCTaGTGCAAGAGCGTCTCCACC | + |
Preference number: 4 (lower is better) Translates to: ITSTLPLYHTATTTEEQWNLSCI*CKSVST Trigger: GGTGGAGACGCTCTTGCAGCAGATGCAAGACAAGTT...CCACTGCTCCTCTGTGGTAGTTGCTGTGTGATAAAGTGGCAGAGTACTCGTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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CDS-3UTR GCA 90 bp | ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTAAACTTGTCTTGCATCTaGTGCAAGAGCGTCTCCACC | + |
Preference number: 4 (lower is better) Translates to: MGCRGTLGYAGCDKNARLNLSCI*CKSVST Trigger: GGTGGAGACGCTCTTGCAGCAGATGCAAGACAAGTT...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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CDS-3UTR CCA 90 bp | ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTATCTTCTACTCCAGCCTaGGTCATGAGGTCAGCGATA | + |
Preference number: 4 (lower is better) Translates to: MGCRGTLGYAGCDKNARLSSTPA*VMRSAI Trigger: TATCGCTGACCTCATGACCCAGGCTGGAGTAGAAGA...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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CDS-3UTR TCA 90 bp | GGGCGGCTCAACAGTCACTTTGCACTGAAAATCAAAGAACCCTACACACTCACGTGGTCTGACATGATCTaGAACTTGTCTTGCATCTGC | + |
Preference number: 4 (lower is better) Translates to: GRLNSHFALKIKEPYTLTWSDMI*NLSCIC Trigger: GCAGATGCAAGACAAGTTTCAGATCATGTCAGACCA...CGTGAGTGTGTAGGGTTCTTTGATTTTCAGTGCAAAGTGACTGTTGAGCCGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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CDS-3UTR TCA 90 bp | ATGGGGTGTAGGGGTACTCTAGGCTATGCAGGCTGTGATAAGAATGCACGTTTATGGTCTGACATGATCTaGAACTTGTCTTGCATCTGC | + |
Preference number: 4 (lower is better) Translates to: MGCRGTLGYAGCDKNARLWSDMI*NLSCIC Trigger: GCAGATGCAAGACAAGTTTCAGATCATGTCAGACCA...TAAACGTGCATTCTTATCACAGCCTGCATAGCCTAGAGTACCCCTACACCCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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CDS-3UTR TCA 90 bp | CCTTCTAAGTCATCAAAACTGGCTTTGAGGCTAAGCCTCCAGACACCAGAATCCTCCGATGATCTGGTCTaGCATGATCTGAAACTTGTC | + |
Preference number: 4 (lower is better) Translates to: PSKSSKLALRLSLQTPESSDDLV*HDLKLV Trigger: GACAAGTTTCAGATCATGTCAGACCAGATCATCGGA...GGATTCTGGTGTCTGGAGGCTTAGCCTCAAAGCCAGTTTTGATGACTTAGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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CDS-3UTR TCA 90 bp | TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGTCCGATGATCTGGTCTaGCATGATCTGAAACTTGTC | + |
Preference number: 4 (lower is better) Translates to: LIINRTDQDVKIASLRDGSDDLV*HDLKLV Trigger: GACAAGTTTCAGATCATGTCAGACCAGATCATCGGA...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |
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CDS-3UTR CAA 90 bp | ATGGCAGGTCCTACCAACGCTACTAGAATCTCATGCAAAACTCTGAGAGACGCTGATCTGAAACTTGTCTaGCATCTGCTGCAAGAGCGT | + |
Preference number: 5 (lower is better) Translates to: MAGPTNATRISCKTLRDADLKLV*HLLQER Trigger: ACGCTCTTGCAGCAGATGCAAGACAAGTTTCAGATC...AGCGTCTCTCAGAGTTTTGCATGAGATTCTAGTAGCGTTGGTAGGACCTGCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034300.8 |
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CDS-3UTR CAA 90 bp | TTAATAATTAATAGAACTGACCAGGATGTGAAGATAGCAAGTTTGAGGGATGGGGATCTGAAACTTGTCTaGCATCTGCTGCAAGAGCGT | + |
Preference number: 5 (lower is better) Translates to: LIINRTDQDVKIASLRDGDLKLV*HLLQER Trigger: ACGCTCTTGCAGCAGATGCAAGACAAGTTTCAGATC...CCCATCCCTCAAACTTGCTATCTTCACATCCTGGTCAGTTCTATTAATTATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034300.8 ENSMUST00000212468.2 |