RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HS6ST1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045216

Ensembl transcript IDs: ENSMUST00000088174.4

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGAAGCTGTGCCCCAAAGCAGGTAGCCTGAGCCTTAGGCAGGGGTaGACTGAAGATGCCTCGACATGGCGCTGGCCTGAGATGGGAGGG +
Preference number: 1 (lower is better)
Translates to: RKLCPKAGSLSLRQG*TEDASTWRWPEMGG
Trigger: CCCTCCCATCTCAGGCCAGCGCCATGTCGAGGCATCTTCAGTCCACCCCTGCCTAAGGCTCAGGCTACCTGCTTTGGGGCACAGCTTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR GCA 90 bp GCTAGTAACACGTTCCTAGGGGGCTGGTCGTTGGGGGCCAGTGCGTaGATAGTAGGTATGGGAGTCTCGGCTAAGCAGACACGTTCCCTC +
Preference number: 1 (lower is better)
Translates to: ASNTFLGGWSLGASA*IVGMGVSAKQTRSL
Trigger: GAGGGAACGTGTCTGCTTAGCCGAGACTCCCATACCTACTATGCACGCACTGGCCCCCAACGACCAGCCCCCTAGGAACGTGTTACTAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 90 bp ACTCTTGTCTGTGGTGACCCGCTCCTTCTTAGCCTGAGTGTTGAGTaGGACAGAGGCAGGGAGTGTGGGACCCGTCCTGTCTCAAGGTCA +
Preference number: 1 (lower is better)
Translates to: TLVCGDPLLLSLSVE*DRGRECGTRPVSRS
Trigger: TGACCTTGAGACAGGACGGGTCCCACACTCCCTGCCTCTGTCTCACTCAACACTCAGGCTAAGAAGGAGCGGGTCACCACAGACAAGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 90 bp CTGCTTGAACCTGGTTCCCCTAAAGCCAGGATACACCGTGGATTCTaGTCATGCTCCAGACAGTGCAGAGGCCAGGCACCAGACTTGAGT +
Preference number: 1 (lower is better)
Translates to: LLEPGSPKARIHRGF*SCSRQCRGQAPDLS
Trigger: ACTCAAGTCTGGTGCCTGGCCTCTGCACTGTCTGGAGCATGATCAGAATCCACGGTGTATCCTGGCTTTAGGGGAACCAGGTTCAAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 90 bp GATGGGGAGGGTTATGCAGACAGGTCCCAGAAAGGACACCCAGAGTaGTTTCTTCCAACCTCAGCTGAGAATGGGAAAGTCCCCATCCTG +
Preference number: 1 (lower is better)
Translates to: DGEGYADRSQKGHPE*FLPTSAENGKVPIL
Trigger: CAGGATGGGGACTTTCCCATTCTCAGCTGAGGTTGGAAGAAACCACTCTGGGTGTCCTTTCTGGGACCTGTCTGCATAACCCTCCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 90 bp CTGAGCCTTAGGCAGGGGTGGACTGAAGATGCCTCGACATGGCGCTaGCCTGAGATGGGAGGGAACATTTTCCAAATGCAGCAAAGATTG +
Preference number: 1 (lower is better)
Translates to: LSLRQGWTEDASTWR*PEMGGNIFQMQQRL
Trigger: CAATCTTTGCTGCATTTGGAAAATGTTCCCTCCCATCTCAGGCCAGCGCCATGTCGAGGCATCTTCAGTCCACCCCTGCCTAAGGCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 90 bp AGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTTaGTGTGGCCCTATATCCCAGCCAAGGGATGCTTTTATTCACGGG +
Preference number: 1 (lower is better)
Translates to: RMGKSPSWPPSTNSG*CGPISQPRDAFIHG
Trigger: CCCGTGAATAAAAGCATCCCTTGGCTGGGATATAGGGCCACATCAACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 90 bp GGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTTGATGTaGCCCTATATCCCAGCCAAGGGATGCTTTTATTCACGGGATAGA +
Preference number: 1 (lower is better)
Translates to: GKVPILATQYQLRLM*PYIPAKGCFYSRDR
Trigger: TCTATCCCGTGAATAAAAGCATCCCTTGGCTGGGATATAGGGCCACATCAACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 90 bp CAGAGACATGCTTGTATTCTCAAAGGAAAGGGCTCCCCAAGATTCTaGGTTATTAGGGGTCCTCAGAGGCCAAGGAGCTTCAACCAAGCT +
Preference number: 1 (lower is better)
Translates to: QRHACILKGKGSPRF*VIRGPQRPRSFNQA
Trigger: AGCTTGGTTGAAGCTCCTTGGCCTCTGAGGACCCCTAATAACCCAGAATCTTGGGGAGCCCTTTCCTTTGAGAATACAAGCATGTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR GCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTAGCAGGGAGGCCATCTaGCCCAGAGGTCCTACCCTG +
Preference number: 2 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGSREAI*PRGPTL
Trigger: CAGGGTAGGACCTCTGGGGCAGATGGCCTCCCTGCT...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR TCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTGGAGCACTCCAGGTCTaGGGATGCCTCAGAGACATG +
Preference number: 2 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGGALQV*GCLRDM
Trigger: CATGTCTCTGAGGCATCCTCAGACCTGGAGTGCTCC...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 90 bp ACCAAGCTATTAGGAGCTAGTAACACGTTCCTAGGGGGCTGGTCGTaGGGGGCCAGTGCGTGCATAGTAGGTATGGGAGTCTCGGCTAAG +
Preference number: 2 (lower is better)
Translates to: TKLLGASNTFLGGWS*GASACIVGMGVSAK
Trigger: CTTAGCCGAGACTCCCATACCTACTATGCACGCACTGGCCCCCAACGACCAGCCCCCTAGGAACGTGTTACTAGCTCCTAATAGCTTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR GCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTATGGGGGAGGGGCAGTaGATCAGAAAGCATAGGGAT +
Preference number: 2 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGMGEGQ*IRKHRD
Trigger: ATCCCTATGCTTTCTGATGCACTGCCCCTCCCCCAT...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 90 bp GAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTaGATGTGGCCCTATATCCCAGCCAAGGGATGCTTTTATTCACGG +
Preference number: 2 (lower is better)
Translates to: ENGKVPILATQYQLR*MWPYIPAKGCFYSR
Trigger: CCGTGAATAAAAGCATCCCTTGGCTGGGATATAGGGCCACATCAACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR CCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTGTTTTAACTATGACATaGGGGCCAGAAGAGCAGGGA +
Preference number: 2 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGVLTMT*GPEEQG
Trigger: TCCCTGCTCTTCTGGCCCCCATGTCATAGTTAAAAC...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR TCA 90 bp TGGAATATTGCTGTGCTACATATGGCCCCACTCTTGTCTGTGGTGACCCGCTCCATACACCGTGGATTCTaGTCATGCTCCAGACAGTGC +
Preference number: 2 (lower is better)
Translates to: WNIAVLHMAPLLSVVTRSIHRGF*SCSRQC
Trigger: GCACTGTCTGGAGCATGATCAGAATCCACGGTGTAT...GGAGCGGGTCACCACAGACAAGAGTGGGGCCATATGTAGCACAGCAATATTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR TCA 90 bp GAGGGTTATGCAGACAGGTCCCAGAAAGGACACCCAGAGTGGTTTCTTCCAACCAGTACCAACTCAGGTTaGTGTGGCCCTATATCCCAG +
Preference number: 2 (lower is better)
Translates to: EGYADRSQKGHPEWFLPTSTNSG*CGPISQ
Trigger: CTGGGATATAGGGCCACATCAACCTGAGTTGGTACT...GGTTGGAAGAAACCACTCTGGGTGTCCTTTCTGGGACCTGTCTGCATAACCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR TCA 90 bp CCTGAGATGGGAGGGAACATTTTCCAAATGCAGCAAAGATTGAGAAGAGACCCGAGCCTGAGTGTTGAGTaGGACAGAGGCAGGGAGTGT +
Preference number: 2 (lower is better)
Translates to: PEMGGNIFQMQQRLRRDPSLSVE*DRGREC
Trigger: ACACTCCCTGCCTCTGTCTCACTCAACACTCAGGCT...CGGGTCTCTTCTCAATCTTTGCTGCATTTGGAAAATGTTCCCTCCCATCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR GCA 90 bp TTGTGTTTGCATGGCCTTTCAGCCCCAAGGCACACTCCTGTAGGCAGAGTCCTTATCCCAGCCAAGGGATaGTTTTATTCACGGGATAGA +
Preference number: 2 (lower is better)
Translates to: LCLHGLSAPRHTPVGRVLIPAKG*FYSRDR
Trigger: TCTATCCCGTGAATAAAAGCATCCCTTGGCTGGGAT...AAGGACTCTGCCTACAGGAGTGTGCCTTGGGGCTGAAAGGCCATGCAAACACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR CCA 90 bp GCAGGGTGCTTTGGGACTGAGTTATTAGTTTGTTGTGTTTGCATGGCCTTTCAGCCAAGGTCAAGTGCCTaGTGCCACACCACACATGTG +
Preference number: 2 (lower is better)
Translates to: AGCFGTELLVCCVCMAFQPRSSA*CHTTHV
Trigger: CACATGTGTGGTGTGGCACCAGGCACTTGACCTTGG...CTGAAAGGCCATGCAAACACAACAAACTAATAACTCAGTCCCAAAGCACCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR GCA 90 bp TTGTGTTTGCATGGCCTTTCAGCCCCAAGGCACACTCCTGTAGGCAGAGTCCTTCGGGATAGAAAGAGTTaGTGGTATGGTAGGAACATT +
Preference number: 2 (lower is better)
Translates to: LCLHGLSAPRHTPVGRVLRDRKS*WYGRNI
Trigger: AATGTTCCTACCATACCAGCAACTCTTTCTATCCCG...AAGGACTCTGCCTACAGGAGTGTGCCTTGGGGCTGAAAGGCCATGCAAACACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR GCA 90 bp TGGAATATTGCTGTGCTACATATGGCCCCACTCTTGTCTGTGGTGACCCGCTCCACAAAAACCCCAATATaGAACATGGCTTCTAGTCCG +
Preference number: 2 (lower is better)
Translates to: WNIAVLHMAPLLSVVTRSTKTPI*NMASSP
Trigger: CGGACTAGAAGCCATGTTGCATATTGGGGTTTTTGT...GGAGCGGGTCACCACAGACAAGAGTGGGGCCATATGTAGCACAGCAATATTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR CCA 90 bp AAAGGACACCCAGAGTGGTTTCTTCCAACCTCAGCTGAGAATGGGAAAGTCCCCAACAGGAAGAACTGTTaGCCCCATTTCTTTCCCTGT +
Preference number: 2 (lower is better)
Translates to: KGHPEWFLPTSAENGKVPNRKNC*PHFFPC
Trigger: ACAGGGAAAGAAATGGGGCCAACAGTTCTTCCTGTT...GGGGACTTTCCCATTCTCAGCTGAGGTTGGAAGAAACCACTCTGGGTGTCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR GCA 90 bp GAGGGTTATGCAGACAGGTCCCAGAAAGGACACCCAGAGTGGTTTCTTCCAACCGATGCCTCAGAGACATaGTTGTATTCTCAAAGGAAA +
Preference number: 2 (lower is better)
Translates to: EGYADRSQKGHPEWFLPTDASET*LYSQRK
Trigger: TTTCCTTTGAGAATACAAGCATGTCTCTGAGGCATC...GGTTGGAAGAAACCACTCTGGGTGTCCTTTCTGGGACCTGTCTGCATAACCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR GCA 90 bp GCAGGGTGCTTTGGGACTGAGTTATTAGTTTGTTGTGTTTGCATGGCCTTTCAGCAGCATCTGGAATATTaGTGTGCTACATATGGCCCC +
Preference number: 2 (lower is better)
Translates to: AGCFGTELLVCCVCMAFQQHLEY*CATYGP
Trigger: GGGGCCATATGTAGCACAGCAATATTCCAGATGCTG...CTGAAAGGCCATGCAAACACAACAAACTAATAACTCAGTCCCAAAGCACCCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 90 bp ATAGAAAGAGTTGCTGGTATGGTAGGAACATTGGCACACAAGCCCTaGTATAAATGTTTCAGTGATGGGGGAGGGGCAGTGCATCAGAAA +
Preference number: 2 (lower is better)
Translates to: IERVAGMVGTLAHKP*YKCFSDGGGAVHQK
Trigger: TTTCTGATGCACTGCCCCTCCCCCATCACTGAAACATTTATACAAGGGCTTGTGTGCCAATGTTCCTACCATACCAGCAACTCTTTCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 90 bp GCTTTTATTCACGGGATAGAAAGAGTTGCTGGTATGGTAGGAACATaGGCACACAAGCCCTTGTATAAATGTTTCAGTGATGGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: AFIHGIERVAGMVGT*AHKPLYKCFSDGGG
Trigger: CCCTCCCCCATCACTGAAACATTTATACAAGGGCTTGTGTGCCAATGTTCCTACCATACCAGCAACTCTTTCTATCCCGTGAATAAAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 72 bp TGTGGTGACCCGCTCCTTCTTAGCCTGAGTGTTGAGTaGGACAGAGGCAGGGAGTGTGGGACCCGTCCTGTC +
Preference number: 3 (lower is better)
Translates to: CGDPLLLSLSVE*DRGRECGTRPV
Trigger: GACAGGACGGGTCCCACACTCCCTGCCTCTGTCTCACTCAACACTCAGGCTAAGAAGGAGCGGGTCACCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR GCA 72 bp ACGTTCCTAGGGGGCTGGTCGTTGGGGGCCAGTGCGTaGATAGTAGGTATGGGAGTCTCGGCTAAGCAGACA +
Preference number: 3 (lower is better)
Translates to: TFLGGWSLGASA*IVGMGVSAKQT
Trigger: TGTCTGCTTAGCCGAGACTCCCATACCTACTATGCACGCACTGGCCCCCAACGACCAGCCCCCTAGGAACGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR GCA 72 bp GGAGCTGGAGGCAGAGGGAAGCACCCTGTTCTGAGATaGTGTGAGTACCAGGAAGCTGTGCCCCAAAGCAGG +
Preference number: 3 (lower is better)
Translates to: GAGGRGKHPVLR*CEYQEAVPQSR
Trigger: CCTGCTTTGGGGCACAGCTTCCTGGTACTCACAGCATCTCAGAACAGGGTGCTTCCCTCTGCCTCCAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp CCCAAGGCACACTCCTGTAGGCAGAGTCCTTGGAGCTaGAGGCAGAGGGAAGCACCCTGTTCTGAGATGCTG +
Preference number: 3 (lower is better)
Translates to: PKAHSCRQSPWS*RQREAPCSEML
Trigger: CAGCATCTCAGAACAGGGTGCTTCCCTCTGCCTCCAGCTCCAAGGACTCTGCCTACAGGAGTGTGCCTTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 72 bp TGGAGGCAGAGGGAAGCACCCTGTTCTGAGATGCTGTaGGTACCAGGAAGCTGTGCCCCAAAGCAGGTAGCC +
Preference number: 3 (lower is better)
Translates to: WRQREAPCSEML*VPGSCAPKQVA
Trigger: GGCTACCTGCTTTGGGGCACAGCTTCCTGGTACTCACAGCATCTCAGAACAGGGTGCTTCCCTCTGCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp CCAATATGCAACATGGCTTCTAGTCCGGTCCCTGGCTaGCTCACAGGTCTGCTGGAAATGGCCGGGTCAGAC +
Preference number: 3 (lower is better)
Translates to: PICNMASSPVPG*LTGLLEMAGSD
Trigger: GTCTGACCCGGCCATTTCCAGCAGACCTGTGAGCCAGCCAGGGACCGGACTAGAAGCCATGTTGCATATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR CAA 90 bp GAGGGTTATGCAGACAGGTCCCAGAAAGGACACCCAGAGTGGTTTCTTCCAACCGGCCAGGCACCAGACTaGAGTCTTCTCTGCCACAGC +
Preference number: 3 (lower is better)
Translates to: EGYADRSQKGHPEWFLPTGQAPD*SLLCHS
Trigger: GCTGTGGCAGAGAAGACTCAAGTCTGGTGCCTGGCC...GGTTGGAAGAAACCACTCTGGGTGTCCTTTCTGGGACCTGTCTGCATAACCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 72 bp CCTGGTTCCCCTAAAGCCAGGATACACCGTGGATTCTaGTCATGCTCCAGACAGTGCAGAGGCCAGGCACCA +
Preference number: 3 (lower is better)
Translates to: PGSPKARIHRGF*SCSRQCRGQAP
Trigger: TGGTGCCTGGCCTCTGCACTGTCTGGAGCATGATCAGAATCCACGGTGTATCCTGGCTTTAGGGGAACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 72 bp CCACTCTTGTCTGTGGTGACCCGCTCCTTCTTAGCCTaGGTGTTGAGTGAGACAGAGGCAGGGAGTGTGGGA +
Preference number: 3 (lower is better)
Translates to: PLLSVVTRSFLA*VLSETEAGSVG
Trigger: TCCCACACTCCCTGCCTCTGTCTCACTCAACACTCAGGCTAAGAAGGAGCGGGTCACCACAGACAAGAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 72 bp TCCTTGGAGCTGGAGGCAGAGGGAAGCACCCTGTTCTaGGATGCTGTGAGTACCAGGAAGCTGTGCCCCAAA +
Preference number: 3 (lower is better)
Translates to: SLELEAEGSTLF*DAVSTRKLCPK
Trigger: TTTGGGGCACAGCTTCCTGGTACTCACAGCATCTCAGAACAGGGTGCTTCCCTCTGCCTCCAGCTCCAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp AGGCAGGGGTGGACTGAAGATGCCTCGACATGGCGCTaGCCTGAGATGGGAGGGAACATTTTCCAAATGCAG +
Preference number: 3 (lower is better)
Translates to: RQGWTEDASTWR*PEMGGNIFQMQ
Trigger: CTGCATTTGGAAAATGTTCCCTCCCATCTCAGGCCAGCGCCATGTCGAGGCATCTTCAGTCCACCCCTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp AGCCTTAGGCAGGGGTGGACTGAAGATGCCTCGACATaGCGCTGGCCTGAGATGGGAGGGAACATTTTCCAA +
Preference number: 3 (lower is better)
Translates to: SLRQGWTEDAST*RWPEMGGNIFQ
Trigger: TTGGAAAATGTTCCCTCCCATCTCAGGCCAGCGCCATGTCGAGGCATCTTCAGTCCACCCCTGCCTAAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp CCGGGTTCAAGTGGAACAGTTCCAGTTCAGACGTGTTaGCTGGACAGTTCTGTGGTCCCTGCCTCCCACTCT +
Preference number: 3 (lower is better)
Translates to: PGSSGTVPVQTC*LDSSVVPASHS
Trigger: AGAGTGGGAGGCAGGGACCACAGAACTGTCCAGCCAACACGTCTGAACTGGAACTGTTCCACTTGAACCCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR GCA 72 bp CCCCATCAAGGACTAGGGCATCCTACTAGCACCCGCTaGACCGAACAGGAAGAACTGTTGGCCCCATTTCTT +
Preference number: 3 (lower is better)
Translates to: PHQGLGHPTSTR*TEQEELLAPFL
Trigger: AAGAAATGGGGCCAACAGTTCTTCCTGTTCGGTGCAGCGGGTGCTAGTAGGATGCCCTAGTCCTTGATGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR CAA 90 bp GAGTGGTTTCTTCCAACCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCGGGCTGACCCTGACCTaGAAAGCAGCTTTGATAGGT +
Preference number: 3 (lower is better)
Translates to: EWFLPTSAENGKVPILATGLTLT*KAALIG
Trigger: ACCTATCAAAGCTGCTTTCAAGGTCAGGGTCAGCCC...GGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGGTTGGAAGAAACCACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR TCA 72 bp AAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTTaGTGTGGCCCTATATCCCAGCCAAGGGATGCTTTT +
Preference number: 3 (lower is better)
Translates to: KSPSWPPSTNSG*CGPISQPRDAF
Trigger: AAAAGCATCCCTTGGCTGGGATATAGGGCCACATCAACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR CAA 90 bp TGGAATATTGCTGTGCTACATATGGCCCCACTCTTGTCTGTGGTGACCCGCTCCACCTTGAAAGCAGCTTaGATAGGTGGGGGTTGGGGA +
Preference number: 3 (lower is better)
Translates to: WNIAVLHMAPLLSVVTRSTLKAA*IGGGWG
Trigger: TCCCCAACCCCCACCTATCAAAGCTGCTTTCAAGGT...GGAGCGGGTCACCACAGACAAGAGTGGGGCCATATGTAGCACAGCAATATTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR GCA 72 bp GGGGAGCACTCCAGGTCTGAGGATGCCTCAGAGACATaGTTGTATTCTCAAAGGAAAGGGCTCCCCAAGATT +
Preference number: 3 (lower is better)
Translates to: GEHSRSEDASET*LYSQRKGLPKI
Trigger: AATCTTGGGGAGCCCTTTCCTTTGAGAATACAAGCATGTCTCTGAGGCATCCTCAGACCTGGAGTGCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp CCCATCCTGGCCACCCAGTACCAACTCAGGTTGATGTaGCCCTATATCCCAGCCAAGGGATGCTTTTATTCA +
Preference number: 3 (lower is better)
Translates to: PILATQYQLRLM*PYIPAKGCFYS
Trigger: TGAATAAAAGCATCCCTTGGCTGGGATATAGGGCCACATCAACCTGAGTTGGTACTGGGTGGCCAGGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp GCTTGTATTCTCAAAGGAAAGGGCTCCCCAAGATTCTaGGTTATTAGGGGTCCTCAGAGGCCAAGGAGCTTC +
Preference number: 3 (lower is better)
Translates to: ACILKGKGSPRF*VIRGPQRPRSF
Trigger: GAAGCTCCTTGGCCTCTGAGGACCCCTAATAACCCAGAATCTTGGGGAGCCCTTTCCTTTGAGAATACAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp GGTTATGCAGACAGGTCCCAGAAAGGACACCCAGAGTaGTTTCTTCCAACCTCAGCTGAGAATGGGAAAGTC +
Preference number: 3 (lower is better)
Translates to: GYADRSQKGHPE*FLPTSAENGKV
Trigger: GACTTTCCCATTCTCAGCTGAGGTTGGAAGAAACCACTCTGGGTGTCCTTTCTGGGACCTGTCTGCATAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR-3UTR CAA 90 bp GCAGGGTGCTTTGGGACTGAGTTATTAGTTTGTTGTGTTTGCATGGCCTTTCAGCAGTACCAACTCAGGTaGATGTGGCCCTATATCCCA +
Preference number: 3 (lower is better)
Translates to: AGCFGTELLVCCVCMAFQQYQLR*MWPYIP
Trigger: TGGGATATAGGGCCACATCAACCTGAGTTGGTACTG...CTGAAAGGCCATGCAAACACAACAAACTAATAACTCAGTCCCAAAGCACCCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR GCA 72 bp GCCAAGGGATGCTTTTATTCACGGGATAGAAAGAGTTaGTGGTATGGTAGGAACATTGGCACACAAGCCCTT +
Preference number: 3 (lower is better)
Translates to: AKGCFYSRDRKS*WYGRNIGTQAL
Trigger: AAGGGCTTGTGTGCCAATGTTCCTACCATACCAGCAACTCTTTCTATCCCGTGAATAAAAGCATCCCTTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR GCA 72 bp CTCAGGTTGATGTGGCCCTATATCCCAGCCAAGGGATaGTTTTATTCACGGGATAGAAAGAGTTGCTGGTAT +
Preference number: 3 (lower is better)
Translates to: LRLMWPYIPAKG*FYSRDRKSCWY
Trigger: ATACCAGCAACTCTTTCTATCCCGTGAATAAAAGCATCCCTTGGCTGGGATATAGGGCCACATCAACCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CCA 72 bp CCCCAGGTTCCCCGCAGATATCTATTCACTCTAAACTaGGCATCTAAACAAATTCCTCTCAGTGACCTTGAC +
Preference number: 3 (lower is better)
Translates to: PQVPRRYLFTLN*ASKQIPLSDLD
Trigger: GTCAAGGTCACTGAGAGGAATTTGTTTAGATGCCCAGTTTAGAGTGAATAGATATCTGCGGGGAACCTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
CDS-3UTR CCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTTGGCGCGCTCAACCATaGTCCTGCCGCCGGCGCGCC +
Preference number: 4 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGWRAQP*SCRRRA
Trigger: GGCGCGCCGGCGGCAGGACCATGGTTGAGCGCGCCA...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
CDS-3UTR CCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTGGGCGGCAGCTCCTCTaGGGTCGGTGTGCGCCCGTC +
Preference number: 4 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGGRQLL*GRCAPV
Trigger: GACGGGCGCACACCGACCCCAGAGGAGCTGCCGCCC...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
CDS-3UTR CCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTACGGCCCGGCTCTTCTaGGTCCTCCCGTGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGTARLF*VLPWQR
Trigger: GCGCTGCCACGGGAGGACCCAGAAGAGCCGGGCCGT...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
CDS-3UTR CCA 90 bp CCTCAGCTGAGAATGGGAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTTTCTGGGTCCTCCCGTaGCAGCGCTTCCTTGGAGCG +
Preference number: 4 (lower is better)
Translates to: PQLRMGKSPSWPPSTNSGFWVLP*QRFLGA
Trigger: CGCTCCAAGGAAGCGCTGCCACGGGAGGACCCAGAA...ACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTCCCATTCTCAGCTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
CDS-3UTR GCA 90 bp GCTGGAGGCAGAGGGAAGCACCCTGTTCTGAGATGCTGTGAGTACCAGGAAGCTGCAGGCGCTGTTCCCTaGGCTCCAGCTGTCTCTTGT +
Preference number: 4 (lower is better)
Translates to: AGGRGKHPVLRCCEYQEAAGAVP*APAVSC
Trigger: ACAAGAGACAGCTGGAGCGCAGGGAACAGCGCCTGC...AGCTTCCTGGTACTCACAGCATCTCAGAACAGGGTGCTTCCCTCTGCCTCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
CDS-3UTR GCA 90 bp GAAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTTGATGTGGCCCTATATGCTTCCTTGGAGCGGTaGAGGAGGCGCTCTTCGCGA +
Preference number: 4 (lower is better)
Translates to: ESPHPGHPVPTQVDVALYASLER*RRRSSR
Trigger: TCGCGAAGAGCGCCTCCTGCACCGCTCCAAGGAAGC...ATATAGGGCCACATCAACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 72 bp TTAGGAGCTAGTAACACGTTCCTAGGGGGCTGGTCGTaGGGGGCCAGTGCGTGCATAGTAGGTATGGGAGTC +
Preference number: 4 (lower is better)
Translates to: LGASNTFLGGWS*GASACIVGMGV
Trigger: GACTCCCATACCTACTATGCACGCACTGGCCCCCAACGACCAGCCCCCTAGGAACGTGTTACTAGCTCCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 72 bp AAAGTCCCCATCCTGGCCACCCAGTACCAACTCAGGTaGATGTGGCCCTATATCCCAGCCAAGGGATGCTTT +
Preference number: 4 (lower is better)
Translates to: KVPILATQYQLR*MWPYIPAKGCF
Trigger: AAAGCATCCCTTGGCTGGGATATAGGGCCACATCAACCTGAGTTGGTACTGGGTGGCCAGGATGGGGACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 72 bp CTAGGGCAGCAGCAATACCCACCAGCATCTGGAATATaGCTGTGCTACATATGGCCCCACTCTTGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: LGQQQYPPASGI*LCYIWPHSCLW
Trigger: CCACAGACAAGAGTGGGGCCATATGTAGCACAGCAATATTCCAGATGCTGGTGGGTATTGCTGCTGCCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 72 bp GAGCACTCCAGGTCTGAGGATGCCTCAGAGACATGCTaGTATTCTCAAAGGAAAGGGCTCCCCAAGATTCTG +
Preference number: 4 (lower is better)
Translates to: EHSRSEDASETC*YSQRKGLPKIL
Trigger: CAGAATCTTGGGGAGCCCTTTCCTTTGAGAATACAAGCATGTCTCTGAGGCATCCTCAGACCTGGAGTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 72 bp GTTGCTGGTATGGTAGGAACATTGGCACACAAGCCCTaGTATAAATGTTTCAGTGATGGGGGAGGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: VAGMVGTLAHKP*YKCFSDGGGAV
Trigger: CACTGCCCCTCCCCCATCACTGAAACATTTATACAAGGGCTTGTGTGCCAATGTTCCTACCATACCAGCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
CDS-3UTR CCA 90 bp ACACGTTCCCTCGCCAGTCTTTTTCAAATCCTTGTCAGTTTTAACTATGACATGCTTTTTCTCGTAATGTaGGTCCGGCGTGGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: TRSLASLFQILVSFNYDMLFLVM*VRRGEE
Trigger: CTCTTCCCCACGCCGGACCCACATTACGAGAAAAAG...CATGTCATAGTTAAAACTGACAAGGATTTGAAAAAGACTGGCGAGGGAACGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4
3UTR CAA 72 bp CACGGGATAGAAAGAGTTGCTGGTATGGTAGGAACATaGGCACACAAGCCCTTGTATAAATGTTTCAGTGAT +
Preference number: 4 (lower is better)
Translates to: HGIERVAGMVGT*AHKPLYKCFSD
Trigger: ATCACTGAAACATTTATACAAGGGCTTGTGTGCCAATGTTCCTACCATACCAGCAACTCTTTCTATCCCGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088174.4