Pregenerated sensors for HS3ST6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039628Ensembl transcript IDs: ENSMUST00000044922.8, ENSMUST00000234202.2, ENSMUST00000234340.2, ENSMUST00000235111.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAATGCGCACAGCACTCCAGGCTGTGTCCACGGGACCCAGGCCGTaGCGGAAGGCCAGGGCACGGAAGCTAGGCAAGCCTGGGGTCTTG | + |
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Preference number: 1 (lower is better) Translates to: PMRTALQAVSTGPRP*RKARARKLGKPGVL Trigger: CAAGACCCCAGGCTTGCCTAGCTTCCGTGCCCTGGCCTTCCGCCACGGCCTGGGTCCCGTGGACACAGCCTGGAGTGCTGTGCGCATTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR CCA 90 bp | GGCGCTGAACCACTGCCTCCGGCACTCGGGGGTGAGGCCGGCCCTTaGATTTACCCAAGCAGCGGGGTCTCCCACTACCCTGGGCCTTTT | + |
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Preference number: 1 (lower is better) Translates to: GAEPLPPALGGEAGP*IYPSSGVSHYPGPF Trigger: AAAAGGCCCAGGGTAGTGGGAGACCCCGCTGCTTGGGTAAATCCAAGGGCCGGCCTCACCCCCGAGTGCCGGAGGCAGTGGTTCAGCGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR GCA 90 bp | CTTGCGGTTGAATGGCCGGTAGAAAGCCTGCAGGCGCTGAACCACTaGCTCCGGCACTCGGGGGTGAGGCCGGCCCTTGGATTTACCCAA | + |
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Preference number: 1 (lower is better) Translates to: LAVEWPVESLQALNH*LRHSGVRPALGFTQ Trigger: TTGGGTAAATCCAAGGGCCGGCCTCACCCCCGAGTGCCGGAGGCAGTGGTTCAGCGCCTGCAGGCTTTCTACCGGCCATTCAACCGCAAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR GCA 90 bp | GAAAGTAGCGGAGCCAGTTGTCCAAGTGCTGAGCATAGAGGCCAATaGGCACAGCACTCCAGGCTGTGTCCACGGGACCCAGGCCGTGGC | + |
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Preference number: 1 (lower is better) Translates to: ESSGASCPSAEHRGQ*AQHSRLCPRDPGRG Trigger: GCCACGGCCTGGGTCCCGTGGACACAGCCTGGAGTGCTGTGCGCATTGGCCTCTATGCTCAGCACTTGGACAACTGGCTCCGCTACTTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR CCA 90 bp | TTCCCAGAGCTCCTGTCCCAATACTTGTACAGTCAGGACACATGTTaGAACATCACCCAGCCACGACGAGGCGCGGACCAGCAGGGACGC | + |
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Preference number: 1 (lower is better) Translates to: FPELLSQYLYSQDTC*NITQPRRGADQQGR Trigger: GCGTCCCTGCTGGTCCGCGCCTCGTCGTGGCTGGGTGATGTTCCAACATGTGTCCTGACTGTACAAGTATTGGGACAGGAGCTCTGGGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234340.2 |
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| 3UTR TCA 90 bp | GACCCAGAAAGTCCTGTACACGGCCCACTTCGCCAGCTGGATCACTaGCCAGGCGCTCACCGCTTACAAACAGGAAGTGGGACAGAGGAA | + |
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Preference number: 1 (lower is better) Translates to: DPESPVHGPLRQLDH*PGAHRLQTGSGTEE Trigger: TTCCTCTGTCCCACTTCCTGTTTGTAAGCGGTGAGCGCCTGGTCAGTGATCCAGCTGGCGAAGTGGGCCGTGTACAGGACTTTCTGGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR CCA 90 bp | CCGTTTGAGACCCAGAAAGTCCTGTACACGGCCCACTTCGCCAGCTaGATCACTGACCAGGCGCTCACCGCTTACAAACAGGAAGTGGGA | + |
|
Preference number: 1 (lower is better) Translates to: PFETQKVLYTAHFAS*ITDQALTAYKQEVG Trigger: TCCCACTTCCTGTTTGTAAGCGGTGAGCGCCTGGTCAGTGATCCAGCTGGCGAAGTGGGCCGTGTACAGGACTTTCTGGGTCTCAAACGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGTGTCCACGGGACCCAGGCCGTGGCGGAAGGCCAGGGCACGGAAGCTAGGCGTGGCATTAGGCCCCTaGAAGAGGGGATTCCACAGA | + |
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Preference number: 2 (lower is better) Translates to: AVSTGPRPWRKARARKLGVALGP*KRGFHR Trigger: TCTGTGGAATCCCCTCTTTCAGGGGCCTAATGCCAC...GCCTAGCTTCCGTGCCCTGGCCTTCCGCCACGGCCTGGGTCCCGTGGACACAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGTGTCCACGGGACCCAGGCCGTGGCGGAAGGCCAGGGCACGGAAGCTAGGCAGTCAGGACACATGTTaGAACATCACCCAGCCACGA | + |
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Preference number: 2 (lower is better) Translates to: AVSTGPRPWRKARARKLGSQDTC*NITQPR Trigger: TCGTGGCTGGGTGATGTTCCAACATGTGTCCTGACT...GCCTAGCTTCCGTGCCCTGGCCTTCCGCCACGGCCTGGGTCCCGTGGACACAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234340.2 |
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| 3UTR-3UTR CCA 90 bp | GTAGAAAGCCTGCAGGCGCTGAACCACTGCCTCCGGCACTCGGGGGTGAGGCCGAATCAGCTTGGTATCTaGGGACATGCCATGGATTCG | + |
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Preference number: 2 (lower is better) Translates to: VESLQALNHCLRHSGVRPNQLGI*GHAMDS Trigger: CGAATCCATGGCATGTCCCCAGATACCAAGCTGATT...CGGCCTCACCCCCGAGTGCCGGAGGCAGTGGTTCAGCGCCTGCAGGCTTTCTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR-3UTR TCA 90 bp | GGATTTACCCAAGCAGCGGGGTCTCCCACTACCCTGGGCCTTTTTGAGGCAGGGGTGGCATTAGGCCCCTaGAAGAGGGGATTCCACAGA | + |
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Preference number: 2 (lower is better) Translates to: GFTQAAGSPTTLGLFEAGVALGP*KRGFHR Trigger: TCTGTGGAATCCCCTCTTTCAGGGGCCTAATGCCAC...CCCTGCCTCAAAAAGGCCCAGGGTAGTGGGAGACCCCGCTGCTTGGGTAAATCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR-3UTR GCA 90 bp | GTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGCCTTGATCAGTCCCAGCCAAAGCTTGGAGAGTGTCTGTaGATAATCAGAGATGGCCCG | + |
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Preference number: 2 (lower is better) Translates to: VLGLQGKARLGLDQSQPKLGECL*IIRDGP Trigger: CGGGCCATCTCTGATTATGCACAGACACTCTCCAAG...CTTTGGCTGGGACTGATCAAGGCCCAGCCTAGCCTTTCCCTGAAGGCCCAGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR-3UTR CCA 90 bp | GTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGCCTTGATCAGTCCCAGCCAAAGGCAAGCCTGGGGTCTTaGAGAGTGTCTGTGCATAAT | + |
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Preference number: 2 (lower is better) Translates to: VLGLQGKARLGLDQSQPKASLGS*RVSVHN Trigger: ATTATGCACAGACACTCTCCAAGACCCCAGGCTTGC...CTTTGGCTGGGACTGATCAAGGCCCAGCCTAGCCTTTCCCTGAAGGCCCAGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR CAA 90 bp | AGGGTCCGTGGCATTAGGCCCCTGAAAGAGGGGATTCCACAGAGCTaGTGTTCCCAGAGCTCCTGTCCCAATACTTGTACAGTCAGGACA | + |
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Preference number: 2 (lower is better) Translates to: RVRGIRPLKEGIPQS*CSQSSCPNTCTVRT Trigger: TGTCCTGACTGTACAAGTATTGGGACAGGAGCTCTGGGAACACAAGCTCTGTGGAATCCCCTCTTTCAGGGGCCTAATGCCACGGACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234340.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAGTGGGACAGAGGAAAGTAGCGGAGCCAGTTGTCCAAGTGCTGAGCATAGAGAAGCTAGGCAAGCCTaGGGTCTTGGAGAGTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: GSGTEESSGASCPSAEHREARQA*GLGECL Trigger: CAGACACTCTCCAAGACCCCAGGCTTGCCTAGCTTC...TCTATGCTCAGCACTTGGACAACTGGCTCCGCTACTTTCCTCTGTCCCACTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR CAA 90 bp | GGGGATTCCACAGAGCTTGTGTTCCCAGAGCTCCTGTCCCAATACTaGTACAGTCAGGACACATGTTGGAACATCACCCAGCCACGACGA | + |
|
Preference number: 2 (lower is better) Translates to: GDSTELVFPELLSQY*YSQDTCWNITQPRR Trigger: TCGTCGTGGCTGGGTGATGTTCCAACATGTGTCCTGACTGTACAAGTATTGGGACAGGAGCTCTGGGAACACAAGCTCTGTGGAATCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234340.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGAAGTGGGACAGAGGAAAGTAGCGGAGCCAGTTGTCCAAGTGCTGAGCATAAATCAGCTTGGTATCTaGGGACATGCCATGGATTCG | + |
|
Preference number: 2 (lower is better) Translates to: QEVGQRKVAEPVVQVLSINQLGI*GHAMDS Trigger: CGAATCCATGGCATGTCCCCAGATACCAAGCTGATT...TATGCTCAGCACTTGGACAACTGGCTCCGCTACTTTCCTCTGTCCCACTTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR GCA 72 bp | GAATGGCCGGTAGAAAGCCTGCAGGCGCTGAACCACTaGCTCCGGCACTCGGGGGTGAGGCCGGCCCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: EWPVESLQALNH*LRHSGVRPALG Trigger: TCCAAGGGCCGGCCTCACCCCCGAGTGCCGGAGGCAGTGGTTCAGCGCCTGCAGGCTTTCTACCGGCCATTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR CCA 72 bp | CCACTGCCTCCGGCACTCGGGGGTGAGGCCGGCCCTTaGATTTACCCAAGCAGCGGGGTCTCCCACTACCCT | + |
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Preference number: 3 (lower is better) Translates to: PLPPALGGEAGP*IYPSSGVSHYP Trigger: AGGGTAGTGGGAGACCCCGCTGCTTGGGTAAATCCAAGGGCCGGCCTCACCCCCGAGTGCCGGAGGCAGTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCTGCAGGCGCTGAACCACTGCCTCCGGCACTCGGGGGTGAGGCCGGCCCTTGGGATTCCACAGAGCTaGTGTTCCCAGAGCTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: SLQALNHCLRHSGVRPALGIPQS*CSQSSC Trigger: ACAGGAGCTCTGGGAACACAAGCTCTGTGGAATCCC...AAGGGCCGGCCTCACCCCCGAGTGCCGGAGGCAGTGGTTCAGCGCCTGCAGGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR GCA 72 bp | GGAGCCAGTTGTCCAAGTGCTGAGCATAGAGGCCAATaGGCACAGCACTCCAGGCTGTGTCCACGGGACCCA | + |
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Preference number: 3 (lower is better) Translates to: GASCPSAEHRGQ*AQHSRLCPRDP Trigger: TGGGTCCCGTGGACACAGCCTGGAGTGCTGTGCGCATTGGCCTCTATGCTCAGCACTTGGACAACTGGCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR-3UTR CAA 90 bp | GTGCTGAGCATAGAGGCCAATGCGCACAGCACTCCAGGCTGTGTCCACGGGACCGGGATTCCACAGAGCTaGTGTTCCCAGAGCTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: VLSIEANAHSTPGCVHGTGIPQS*CSQSSC Trigger: ACAGGAGCTCTGGGAACACAAGCTCTGTGGAATCCC...GGTCCCGTGGACACAGCCTGGAGTGCTGTGCGCATTGGCCTCTATGCTCAGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR TCA 72 bp | AGTCCTGTACACGGCCCACTTCGCCAGCTGGATCACTaGCCAGGCGCTCACCGCTTACAAACAGGAAGTGGG | + |
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Preference number: 3 (lower is better) Translates to: SPVHGPLRQLDH*PGAHRLQTGSG Trigger: CCCACTTCCTGTTTGTAAGCGGTGAGCGCCTGGTCAGTGATCCAGCTGGCGAAGTGGGCCGTGTACAGGACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| 3UTR CCA 72 bp | CTCCTGTCCCAATACTTGTACAGTCAGGACACATGTTaGAACATCACCCAGCCACGACGAGGCGCGGACCAG | + |
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Preference number: 3 (lower is better) Translates to: LLSQYLYSQDTC*NITQPRRGADQ Trigger: CTGGTCCGCGCCTCGTCGTGGCTGGGTGATGTTCCAACATGTGTCCTGACTGTACAAGTATTGGGACAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234340.2 |
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| CDS-3UTR CCA 90 bp | GGAAGTGGGACAGAGGAAAGTAGCGGAGCCAGTTGTCCAAGTGCTGAGCATAGACGCAGTGCAGTCCCCTaGCCCGTCCCCGCACCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GSGTEESSGASCPSAEHRRSAVP*PVPAPW Trigger: CCAGGGTGCGGGGACGGGCCAGGGGACTGCACTGCG...TCTATGCTCAGCACTTGGACAACTGGCTCCGCTACTTTCCTCTGTCCCACTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS-3UTR CCA 90 bp | ACAGGAAGTGGGACAGAGGAAAGTAGCGGAGCCAGTTGTCCAAGTGCTGAGCATCGCAGTGCAGTCCCCTaGCCCGTCCCCGCACCCTGG | + |
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Preference number: 4 (lower is better) Translates to: TGSGTEESSGASCPSAEHRSAVP*PVPAPW Trigger: CCAGGGTGCGGGGACGGGCCAGGGGACTGCACTGCG...ATGCTCAGCACTTGGACAACTGGCTCCGCTACTTTCCTCTGTCCCACTTCCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS-3UTR GCA 90 bp | ATCTGCCCATCCAGGGTCCGTGGCATTAGGCCCCTGAAAGAGGGGATTCCACAGGGGTTCAGAGCCAAGTaGACGGACGTCGGGGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: ICPSRVRGIRPLKEGIPQGFRAK*TDVGVQ Trigger: TTGCACCCCGACGTCCGTGCACTTGGCTCTGAACCC...CTGTGGAATCCCCTCTTTCAGGGGCCTAATGCCACGGACCCTGGATGGGCAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS-3UTR CCA 90 bp | GACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGCCTTCGCAGTGCAGTCCCCTaGCCCGTCCCCGCACCCTGG | + |
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Preference number: 4 (lower is better) Translates to: DRHKLKVLGLQGKARLGLRSAVP*PVPAPW Trigger: CCAGGGTGCGGGGACGGGCCAGGGGACTGCACTGCG...AAGGCCCAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS-3UTR TCA 90 bp | GAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGTCCGGCACTCGGGGGTaGGGCCGGCCCTTGGATTTA | + |
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Preference number: 4 (lower is better) Translates to: EPADRHKLKVLGLQGKARSGTRG*GRPLDL Trigger: TAAATCCAAGGGCCGGCCTCACCCCCGAGTGCCGGA...CCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR GCA 90 bp | GGAAGTGGGACAGAGGAAAGTAGCGGAGCCAGTTGTCCAAGTGCTGAGCATAGAGGGTTCAGAGCCAAGTaGACGGACGTCGGGGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: GSGTEESSGASCPSAEHRGFRAK*TDVGVQ Trigger: TTGCACCCCGACGTCCGTGCACTTGGCTCTGAACCC...TCTATGCTCAGCACTTGGACAACTGGCTCCGCTACTTTCCTCTGTCCCACTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS-3UTR CCA 90 bp | AAATACTGCAGTGAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGCGCAGTGCAGTCCCCTaGCCCGTCCCCGCACCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KYCSEPADRHKLKVLGLQRSAVP*PVPAPW Trigger: CCAGGGTGCGGGGACGGGCCAGGGGACTGCACTGCG...CTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTCACTGCAGTATTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234340.2 |
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| CDS-3UTR TCA 90 bp | TGCAGTGAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGTCCGGCACTCGGGGGTaGGGCCGGCCCTTGGATTTA | + |
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Preference number: 4 (lower is better) Translates to: CSEPADRHKLKVLGLQGKSGTRG*GRPLDL Trigger: TAAATCCAAGGGCCGGCCTCACCCCCGAGTGCCGGA...CTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTCACTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR CCA 90 bp | GCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGCGGTCTCCCACTACCCTaGGCCTTTTTGAGGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: ADRHKLKVLGLQGKARLGGLPLP*AFLRQG Trigger: CCCCTGCCTCAAAAAGGCCCAGGGTAGTGGGAGACC...GCCCAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR CCA 90 bp | GAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGGGTGAGGCCGGCCCTTaGATTTACCCAAGCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: EPADRHKLKVLGLQGKARGEAGP*IYPSSG Trigger: CCCGCTGCTTGGGTAAATCCAAGGGCCGGCCTCACC...CCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR GCA 90 bp | CCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGGTTCAGAGCCAAGTaGACGGACGTCGGGGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: PADRHKLKVLGLQGKARLGFRAK*TDVGVQ Trigger: TTGCACCCCGACGTCCGTGCACTTGGCTCTGAACCC...CAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS-3UTR CCA 90 bp | GACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGCCTTGGTCTCCCACTACCCTaGGCCTTTTTGAGGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: DRHKLKVLGLQGKARLGLGLPLP*AFLRQG Trigger: CCCCTGCCTCAAAAAGGCCCAGGGTAGTGGGAGACC...AAGGCCCAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR GCA 90 bp | TACTGCAGTGAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAGGGTTCAGAGCCAAGTaGACGGACGTCGGGGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: YCSEPADRHKLKVLGLQGGFRAK*TDVGVQ Trigger: TTGCACCCCGACGTCCGTGCACTTGGCTCTGAACCC...TCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTCACTGCAGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234340.2 |
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| CDS-3UTR CCA 90 bp | GAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGGAAGCTAGGCAAGCCTaGGGTCTTGGAGAGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: EPADRHKLKVLGLQGKAREARQA*GLGECL Trigger: CAGACACTCTCCAAGACCCCAGGCTTGCCTAGCTTC...CCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR CCA 90 bp | GACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGCCTTGAAGCTAGGCAAGCCTaGGGTCTTGGAGAGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: DRHKLKVLGLQGKARLGLEARQA*GLGECL Trigger: CAGACACTCTCCAAGACCCCAGGCTTGCCTAGCTTC...AAGGCCCAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR CCA 90 bp | AAATACTGCAGTGAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGTGAGGCCGGCCCTTaGATTTACCCAAGCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: KYCSEPADRHKLKVLGLQGEAGP*IYPSSG Trigger: CCCGCTGCTTGGGTAAATCCAAGGGCCGGCCTCACC...CTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTCACTGCAGTATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044922.8 |
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| CDS-3UTR CCA 90 bp | CCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGCACCTGTCGAAGAAGTaGGGTTCAGAGCCAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: PADRHKLKVLGLQGKARLHLSKK*GSEPSA Trigger: TGCACTTGGCTCTGAACCCCACTTCTTCGACAGGTG...CAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044922.8 ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS-3UTR CCA 90 bp | TGCAGTGAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGCCCCTGTCGAAGAAGTaGGGTTCAGAGCCAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: CSEPADRHKLKVLGLQGKPLSKK*GSEPSA Trigger: TGCACTTGGCTCTGAACCCCACTTCTTCGACAGGGG...CTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTCACTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234202.2 |
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| CDS-3UTR GCA 90 bp | GAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTTGGAGAGTGTCTGTaGATAATCAGAGATGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: EPADRHKLKVLGLQGKARLGECL*IIRDGP Trigger: CGGGCCATCTCTGATTATGCACAGACACTCTCCAAG...CCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR CCA 90 bp | CCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGGCAAGCCTGGGGTCTTaGAGAGTGTCTGTGCATAAT | + |
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Preference number: 4 (lower is better) Translates to: PADRHKLKVLGLQGKARLASLGS*RVSVHN Trigger: ATTATGCACAGACACTCTCCAAGACCCCAGGCTTGC...CAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR CCA 90 bp | GACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGGGCCTTGCAAGCCTGGGGTCTTaGAGAGTGTCTGTGCATAAT | + |
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Preference number: 4 (lower is better) Translates to: DRHKLKVLGLQGKARLGLASLGS*RVSVHN Trigger: ATTATGCACAGACACTCTCCAAGACCCCAGGCTTGC...AAGGCCCAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| 3UTR CAA 72 bp | ACAGAGCTTGTGTTCCCAGAGCTCCTGTCCCAATACTaGTACAGTCAGGACACATGTTGGAACATCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: TELVFPELLSQY*YSQDTCWNITQ Trigger: CTGGGTGATGTTCCAACATGTGTCCTGACTGTACAAGTATTGGGACAGGAGCTCTGGGAACACAAGCTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234340.2 |
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| CDS-3UTR CCA 90 bp | CCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGCTGAATCAGCTTGGTATCTaGGGACATGCCATGGATTCG | + |
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Preference number: 4 (lower is better) Translates to: PADRHKLKVLGLQGKARLNQLGI*GHAMDS Trigger: CGAATCCATGGCATGTCCCCAGATACCAAGCTGATT...CAGCCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS-3UTR CCA 90 bp | GAGCCAGCAGACAGACATAAATTAAAGGTACTGGGCCTTCAGGGAAAGGCTAGGAATCAGCTTGGTATCTaGGGACATGCCATGGATTCG | + |
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Preference number: 4 (lower is better) Translates to: EPADRHKLKVLGLQGKARNQLGI*GHAMDS Trigger: CGAATCCATGGCATGTCCCCAGATACCAAGCTGATT...CCTAGCCTTTCCCTGAAGGCCCAGTACCTTTAATTTATGTCTGTCTGCTGGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 |
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| CDS GCA 90 bp | AGGAAAGCGCCGGCGCCCCGGGCCGCTGGCCACCGGCAGGCCGGGTaGTCTCAGACGGAGGGAGGTGTGGGGCGGCTCGGCGGGTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: RKAPAPRAAGHRQAG*SQTEGGVGRLGGCR Trigger: CCTGCACCCGCCGAGCCGCCCCACACCTCCCTCCGTCTGAGAGCACCCGGCCTGCCGGTGGCCAGCGGCCCGGGGCGCCGGCGCTTTCCT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS GCA 90 bp | GCCGGGTGCTCTCAGACGGAGGGAGGTGTGGGGCGGCTCGGCGGGTaGAGGAACCGGAGCAGGGGCGCGGGCGGCAGGTGGACAGCGGCC | + |
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Preference number: 5 (lower is better) Translates to: AGCSQTEGGVGRLGG*RNRSRGAGGRWTAA Trigger: GGCCGCTGTCCACCTGCCGCCCGCGCCCCTGCTCCGGTTCCTGCACCCGCCGAGCCGCCCCACACCTCCCTCCGTCTGAGAGCACCCGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS CCA 72 bp | ACCGGCAGGCCGGGTGCTCTCAGACGGAGGGAGGTGTaGGGCGGCTCGGCGGGTGCAGGAACCGGAGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TGRPGALRRREV*GGSAGAGTGAG Trigger: CCCTGCTCCGGTTCCTGCACCCGCCGAGCCGCCCCACACCTCCCTCCGTCTGAGAGCACCCGGCCTGCCGGT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 ENSMUST00000234340.2 ENSMUST00000235111.2 |
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| CDS TCA 72 bp | GCAATGCGCGCGTGCCGCCTTTCTTCACACCCACAATaGGCGCCTGAGGAAAGCGCCGGCGCCCCGGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: AMRACRLSSHPQ*APEESAGAPGR Trigger: GCGGCCCGGGGCGCCGGCGCTTTCCTCAGGCGCTCATTGTGGGTGTGAAGAAAGGCGGCACGCGCGCATTGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000044922.8 ENSMUST00000234202.2 ENSMUST00000234340.2 ENSMUST00000235111.2 |
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