Pregenerated sensors for HS3ST3A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047759Ensembl transcript IDs: ENSMUST00000058652.6
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCTTCTCTCAACAGAAGAGCTCAGTAATTTCTCTGGGACTCAGATaGCCACCCATCGGTCAGATCTCCTTGTCTAAGCATCCTTTGATC | + |
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Preference number: 1 (lower is better) Translates to: IFSQQKSSVISLGLR*PPIGQISLSKHPLI Trigger: GATCAAAGGATGCTTAGACAAGGAGATCTGACCGATGGGTGGTCATCTGAGTCCCAGAGAAATTACTGAGCTCTTCTGTTGAGAGAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CCA 90 bp | AAGAAGTCAAACCAACAGCTAGTAAGTGCTACTCTGCGACACTCCTaGTTCTGTCTGTCCATCTTCTCTCAACAGAAGAGCTCAGTAATT | + |
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Preference number: 1 (lower is better) Translates to: KKSNQQLVSATLRHS*FCLSIFSQQKSSVI Trigger: AATTACTGAGCTCTTCTGTTGAGAGAAGATGGACAGACAGAACCAGGAGTGTCGCAGAGTAGCACTTACTAGCTGTTGGTTTGACTTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR-3UTR CCA 90 bp | CTTTGTAATGAGGCTGTGTGCCATAGGCCAGCCCGGGACTCACATTGCAGTGACACATGCTTGCAGTGGTaGTGTAAGGGCCAAAACTAC | + |
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Preference number: 2 (lower is better) Translates to: LCNEAVCHRPARDSHCSDTCLQW*CKGQNY Trigger: GTAGTTTTGGCCCTTACACCACCACTGCAAGCATGT...GTCACTGCAATGTGAGTCCCGGGCTGGCCTATGGCACACAGCCTCATTACAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CAA 90 bp | GCATCCTTTGATCAGCCAAGGGGCAAGATAGGCTCCCTAGAGGGCTaGTGTCCCCATCTCTGTGACTTCCTTGAATACAGCTTTGTAATG | + |
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Preference number: 2 (lower is better) Translates to: ASFDQPRGKIGSLEG*CPHLCDFLEYSFVM Trigger: CATTACAAAGCTGTATTCAAGGAAGTCACAGAGATGGGGACACAAGCCCTCTAGGGAGCCTATCTTGCCCCTTGGCTGATCAAAGGATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR-3UTR TCA 90 bp | CTTTGTAATGAGGCTGTGTGCCATAGGCCAGCCCGGGACTCACATTGCAGTGACGGTGCTCATTCTTTGTaGATGAAAGCTTATAACGCA | + |
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Preference number: 2 (lower is better) Translates to: LCNEAVCHRPARDSHCSDGAHSL*MKAYNA Trigger: TGCGTTATAAGCTTTCATTCACAAAGAATGAGCACC...GTCACTGCAATGTGAGTCCCGGGCTGGCCTATGGCACACAGCCTCATTACAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR-3UTR TCA 90 bp | CTTTGTAATGAGGCTGTGTGCCATAGGCCAGCCCGGGACTCACATTGCAGTGACTATCTTAGCGAGAAATaGCTTAGGAGAAAAGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: LCNEAVCHRPARDSHCSDYLSEK*LRRKVA Trigger: TGCCACTTTTCTCCTAAGTCATTTCTCGCTAAGATA...GTCACTGCAATGTGAGTCCCGGGCTGGCCTATGGCACACAGCCTCATTACAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR-3UTR TCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGGTCATTCGACCTCCCTaGGACTCAGTTTCCCTCATC | + |
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Preference number: 2 (lower is better) Translates to: RYNSGFCASCFCVMAGREVIRPP*DSVSLI Trigger: GATGAGGGAAACTGAGTCTCAGGGAGGTCGAATGAC...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR-3UTR GCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGCCAACAGCTAGTAAGTaGTACTCTGCGACACTCCTG | + |
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Preference number: 2 (lower is better) Translates to: RYNSGFCASCFCVMAGREPTASK*YSATLL Trigger: CAGGAGTGTCGCAGAGTAGCACTTACTAGCTGTTGG...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR-3UTR TCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGGATAAAGTGACCGAGTaGCAGCTTCAATCTGTAGGG | + |
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Preference number: 2 (lower is better) Translates to: RYNSGFCASCFCVMAGREDKVTE*QLQSVG Trigger: CCCTACAGATTGAAGCTGTCACTCGGTCACTTTATC...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CAA 90 bp | CCCACTCAGAGAGCAAGGAGTACTCTTAATAAACTATTGATTCATTaGAGCCATTTAGACAGGGAAGGGAGGAGACATCACCATTCCATC | + |
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Preference number: 2 (lower is better) Translates to: PTQRARSTLNKLLIH*SHLDREGRRHHHSI Trigger: GATGGAATGGTGATGTCTCCTCCCTTCCCTGTCTAAATGGCTCAAATGAATCAATAGTTTATTAAGAGTACTCCTTGCTCTCTGAGTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CAA 90 bp | TCGTTAATACCCACTCAGAGAGCAAGGAGTACTCTTAATAAACTATaGATTCATTTGAGCCATTTAGACAGGGAAGGGAGGAGACATCAC | + |
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Preference number: 2 (lower is better) Translates to: SLIPTQRARSTLNKL*IHLSHLDREGRRHH Trigger: GTGATGTCTCCTCCCTTCCCTGTCTAAATGGCTCAAATGAATCAATAGTTTATTAAGAGTACTCCTTGCTCTCTGAGTGGGTATTAACGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR GCA 72 bp | GAGGCTGTGTGCCATAGGCCAGCCCGGGACTCACATTaGAGTGACAAGTCCCCCTTGTGCTTTCCGGACCAC | + |
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Preference number: 3 (lower is better) Translates to: EAVCHRPARDSH*SDKSPLCFPDH Trigger: GTGGTCCGGAAAGCACAAGGGGGACTTGTCACTGCAATGTGAGTCCCGGGCTGGCCTATGGCACACAGCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR GCA 72 bp | GCCCGGGACTCACATTGCAGTGACAAGTCCCCCTTGTaGTTTCCGGACCACTCCGGAGCTTCTAAAGCTCCA | + |
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Preference number: 3 (lower is better) Translates to: ARDSHCSDKSPL*FPDHSGASKAP Trigger: TGGAGCTTTAGAAGCTCCGGAGTGGTCCGGAAAGCACAAGGGGGACTTGTCACTGCAATGTGAGTCCCGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR TCA 72 bp | CACCCATCGGTCAGATCTCCTTGTCTAAGCATCCTTTaGTCAGCCAAGGGGCAAGATAGGCTCCCTAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: HPSVRSPCLSIL*SAKGQDRLPRG Trigger: CCCTCTAGGGAGCCTATCTTGCCCCTTGGCTGATCAAAGGATGCTTAGACAAGGAGATCTGACCGATGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR TCA 72 bp | CGCCGTATTAGTCTTCCTAAGAGGCATGTACATCCCTaGCAGGGCACCTATGACAAACCCACAGTCACCCAG | + |
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Preference number: 3 (lower is better) Translates to: RRISLPKRHVHP*QGTYDKPTVTQ Trigger: CTGGGTGACTGTGGGTTTGTCATAGGTGCCCTGTCAGGGATGTACATGCCTCTTAGGAAGACTAATACGGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CCA 72 bp | GATGATCTCGAGAAACACACTACATGCTTGCAGTGGTaGTGTAAGGGCCAAAACTACCATCGAAAATGGCCC | + |
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Preference number: 3 (lower is better) Translates to: DDLEKHTTCLQW*CKGQNYHRKWP Trigger: GGGCCATTTTCGATGGTAGTTTTGGCCCTTACACCACCACTGCAAGCATGTAGTGTGTTTCTCGAGATCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CCA 72 bp | AACCAACAGCTAGTAAGTGCTACTCTGCGACACTCCTaGTTCTGTCTGTCCATCTTCTCTCAACAGAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: NQQLVSATLRHS*FCLSIFSQQKS Trigger: GCTCTTCTGTTGAGAGAAGATGGACAGACAGAACCAGGAGTGTCGCAGAGTAGCACTTACTAGCTGTTGGTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR TCA 72 bp | CAACAGAAGAGCTCAGTAATTTCTCTGGGACTCAGATaGCCACCCATCGGTCAGATCTCCTTGTCTAAGCAT | + |
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Preference number: 3 (lower is better) Translates to: QQKSSVISLGLR*PPIGQISLSKH Trigger: ATGCTTAGACAAGGAGATCTGACCGATGGGTGGTCATCTGAGTCCCAGAGAAATTACTGAGCTCTTCTGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR TCA 72 bp | CGCAAAGGAACGGGAGATATGAGATGCTTAGATACATaGAATCTCCTTTTCTGCTATGCGCATGTTTGGTGC | + |
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Preference number: 3 (lower is better) Translates to: RKGTGDMRCLDT*NLLFCYAHVWC Trigger: GCACCAAACATGCGCATAGCAGAAAAGGAGATTTCATGTATCTAAGCATCTCATATCTCCCGTTCCTTTGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR GCA 72 bp | AAAAGAAATAAAGAAGTCAAACCAACAGCTAGTAAGTaGTACTCTGCGACACTCCTGGTTCTGTCTGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: KRNKEVKPTASK*YSATLLVLSVH Trigger: ATGGACAGACAGAACCAGGAGTGTCGCAGAGTAGCACTTACTAGCTGTTGGTTTGACTTCTTTATTTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR CCA 90 bp | CTTTGTAATGAGGCTGTGTGCCATAGGCCAGCCCGGGACTCACATTGCAGTGACGCCAGGGTCCCCGGCTaGGCCTCGGCCACGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LCNEAVCHRPARDSHCSDARVPG*ASATLL Trigger: AAGCAGCGTGGCCGAGGCCCAGCCGGGGACCCTGGC...GTCACTGCAATGTGAGTCCCGGGCTGGCCTATGGCACACAGCCTCATTACAAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR TCA 90 bp | CTCCTTTTCTGCTATGCGCATGTTTGGTGCTGGTTATCCACGGGGACCGGAAGACGCGCAATGGTGGGGTaGGCGCGGCCCTTAGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: LLFCYAHVWCWLSTGTGRRAMVG*ARPLVL Trigger: CAAGACTAAGGGCCGCGCTCACCCCACCATTGCGCG...TCTTCCGGTCCCCGTGGATAACCAGCACCAAACATGCGCATAGCAGAAAAGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR GCA 90 bp | GTTCTGTCTGTCCATCTTCTCTCAACAGAAGAGCTCAGTAATTTCTCTGGGACTCAGTTCCCTGGGTCCTaGAGGGACGCCGCGCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: VLSVHLLSTEELSNFSGTQFPGS*RDAAPR Trigger: CCGGGGCGCGGCGTCCCTGCAGGACCCAGGGAACTG...AGTCCCAGAGAAATTACTGAGCTCTTCTGTTGAGAGAAGATGGACAGACAGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CAA 72 bp | GATCAGCCAAGGGGCAAGATAGGCTCCCTAGAGGGCTaGTGTCCCCATCTCTGTGACTTCCTTGAATACAGC | + |
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Preference number: 4 (lower is better) Translates to: DQPRGKIGSLEG*CPHLCDFLEYS Trigger: GCTGTATTCAAGGAAGTCACAGAGATGGGGACACAAGCCCTCTAGGGAGCCTATCTTGCCCCTTGGCTGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR GCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGATGGCCTGCGGCAGCTaGTTGCTGCCCTCGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: RYNSGFCASCFCVMAGREMACGS*LLPSSR Trigger: TCTGGACGAGGGCAGCAAGCAGCTGCCGCAGGCCAT...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR GCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGCGAGATGCGCGCGGGTaGCTCCCGGGTCACAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: RYNSGFCASCFCVMAGRERDARG*LPGHKV Trigger: TACTTTGTGACCCGGGAGGCACCCGCGCGCATCTCG...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR GCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGAGCCAGGGCTCCAGGTaGTTGGCGTACAGGCCGATC | + |
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Preference number: 4 (lower is better) Translates to: RYNSGFCASCFCVMAGRESQGSR*LAYRPI Trigger: GATCGGCCTGTACGCCAAGCACCTGGAGCCCTGGCT...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR CCA 90 bp | GTTCTGTCTGTCCATCTTCTCTCAACAGAAGAGCTCAGTAATTTCTCTGGGACTACATCGCCAGTTCCCTaGGTCCTGCAGGGACGCCGC | + |
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Preference number: 4 (lower is better) Translates to: VLSVHLLSTEELSNFSGTTSPVP*VLQGRR Trigger: GCGGCGTCCCTGCAGGACCCAGGGAACTGGCGATGT...AGTCCCAGAGAAATTACTGAGCTCTTCTGTTGAGAGAAGATGGACAGACAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR GCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGCCTGCGGCAGCTGCTTaGTGCCCTCGTCCAGAAGTA | + |
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Preference number: 4 (lower is better) Translates to: RYNSGFCASCFCVMAGREPAAAA*CPRPEV Trigger: TACTTCTGGACGAGGGCAGCAAGCAGCTGCCGCAGG...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR GCA 90 bp | GTTCTGTCTGTCCATCTTCTCTCAACAGAAGAGCTCAGTAATTTCTCTGGGACTGCGGCAGCTGCTTGCTaGCCTCGTCCAGAAGTAAGG | + |
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Preference number: 4 (lower is better) Translates to: VLSVHLLSTEELSNFSGTAAAAC*PRPEVR Trigger: CCTTACTTCTGGACGAGGGCAGCAAGCAGCTGCCGC...AGTCCCAGAGAAATTACTGAGCTCTTCTGTTGAGAGAAGATGGACAGACAGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR TCA 90 bp | AGATACAATTCTGGGTTTTGTGCAAGCTGCTTTTGCGTAATGGCAGGCAGAGAGAGACGTAGAGGGAAGTaGGTAGCGAGCAGAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: RYNSGFCASCFCVMAGRERRRGK*VASRAS Trigger: TGATGCTCTGCTCGCTACTCACTTCCCTCTACGTCT...CTCTCTGCCTGCCATTACGCAAAAGCAGCTTGCACAAAACCCAGAATTGTATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR TCA 90 bp | GTTCTGTCTGTCCATCTTCTCTCAACAGAAGAGCTCAGTAATTTCTCTGGGACTTCAGCAAGAACTTCCTaGAGATGCTGCGCGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: VLSVHLLSTEELSNFSGTSARTS*RCCATV Trigger: CACTGTCGCGCAGCATCTTCAGGAAGTTCTTGCTGA...AGTCCCAGAGAAATTACTGAGCTCTTCTGTTGAGAGAAGATGGACAGACAGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| 3UTR CAA 72 bp | AGAGCAAGGAGTACTCTTAATAAACTATTGATTCATTaGAGCCATTTAGACAGGGAAGGGAGGAGACATCAC | + |
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Preference number: 4 (lower is better) Translates to: RARSTLNKLLIH*SHLDREGRRHH Trigger: GTGATGTCTCCTCCCTTCCCTGTCTAAATGGCTCAAATGAATCAATAGTTTATTAAGAGTACTCCTTGCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS GCA 90 bp | CGTCCAGAAGTAAGGCCAGGGTCCCCGGCTGGGCCTCGGCCACGCTaGTTCCCGCCCCGGAGCCTCCTGGTGCGGCGGCCAGCCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: RPEVRPGSPAGPRPR*FPPRSLLVRRPAQG Trigger: GCCCTGGGCTGGCCGCCGCACCAGGAGGCTCCGGGGCGGGAAGCAGCGTGGCCGAGGCCCAGCCGGGGACCCTGGCCTTACTTCTGGACG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS GCA 90 bp | TGGTCGCTGCTGTCTCCTGGCCCCGACCGCCCGCGCCTCCTCCGTTaGCTCAGCTGCAGGAGGCGCTTCCTTGGCGCTCCCGCGGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: WSLLSPGPDRPRLLR*LSCRRRFLGAPAGH Trigger: GTGGCCCGCGGGAGCGCCAAGGAAGCGCCTCCTGCAGCTGAGGCAACGGAGGAGGCGCGGGCGGTCGGGGCCAGGAGACAGCAGCGACCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS CCA 90 bp | CCGCCCGCGCCTCCTCCGTTGCCTCAGCTGCAGGAGGCGCTTCCTTaGCGCTCCCGCGGGCCACATCGCCAGTTCCCTGGGTCCTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PPAPPPLPQLQEALP*RSRGPHRQFPGSCR Trigger: CCTGCAGGACCCAGGGAACTGGCGATGTGGCCCGCGGGAGCGCCAAGGAAGCGCCTCCTGCAGCTGAGGCAACGGAGGAGGCGCGGGCGG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS CCA 90 bp | AGCTGCTTGCTGCCCTCGTCCAGAAGTAAGGCCAGGGTCCCCGGCTaGGCCTCGGCCACGCTGCTTCCCGCCCCGGAGCCTCCTGGTGCG | + |
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Preference number: 5 (lower is better) Translates to: SCLLPSSRSKARVPG*ASATLLPAPEPPGA Trigger: CGCACCAGGAGGCTCCGGGGCGGGAAGCAGCGTGGCCGAGGCCCAGCCGGGGACCCTGGCCTTACTTCTGGACGAGGGCAGCAAGCAGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR CAA 90 bp | CTTTGTAATGAGGCTGTGTGCCATAGGCCAGCCCGGGACTCACATTGCAGTGACGCCTGCGGCAGCTGCTaGCTGCCCTCGTCCAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: LCNEAVCHRPARDSHCSDACGSC*LPSSRS Trigger: ACTTCTGGACGAGGGCAGCAAGCAGCTGCCGCAGGC...GTCACTGCAATGTGAGTCCCGGGCTGGCCTATGGCACACAGCCTCATTACAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS-3UTR CAA 90 bp | GTTCTGTCTGTCCATCTTCTCTCAACAGAAGAGCTCAGTAATTTCTCTGGGACTGCAGGAGGCGCTTCCTaGGCGCTCCCGCGGGCCACA | + |
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Preference number: 5 (lower is better) Translates to: VLSVHLLSTEELSNFSGTAGGAS*ALPRAT Trigger: TGTGGCCCGCGGGAGCGCCAAGGAAGCGCCTCCTGC...AGTCCCAGAGAAATTACTGAGCTCTTCTGTTGAGAGAAGATGGACAGACAGAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS CCA 72 bp | TCCTTGGCGCTCCCGCGGGCCACATCGCCAGTTCCCTaGGTCCTGCAGGGACGCCGCGCCCCGGGACCCCCG | + |
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Preference number: 6 (lower is better) Translates to: SLALPRATSPVP*VLQGRRAPGPP Trigger: CGGGGGTCCCGGGGCGCGGCGTCCCTGCAGGACCCAGGGAACTGGCGATGTGGCCCGCGGGAGCGCCAAGGA 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS GCA 72 bp | CTGTCTCCTGGCCCCGACCGCCCGCGCCTCCTCCGTTaGCTCAGCTGCAGGAGGCGCTTCCTTGGCGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: LSPGPDRPRLLR*LSCRRRFLGAP Trigger: GGGAGCGCCAAGGAAGCGCCTCCTGCAGCTGAGGCAACGGAGGAGGCGCGGGCGGTCGGGGCCAGGAGACAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS CCA 72 bp | CCTCCTCCGTTGCCTCAGCTGCAGGAGGCGCTTCCTTaGCGCTCCCGCGGGCCACATCGCCAGTTCCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PPPLPQLQEALP*RSRGPHRQFPG Trigger: CCCAGGGAACTGGCGATGTGGCCCGCGGGAGCGCCAAGGAAGCGCCTCCTGCAGCTGAGGCAACGGAGGAGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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| CDS CAA 72 bp | GCCTCCTCCGTTGCCTCAGCTGCAGGAGGCGCTTCCTaGGCGCTCCCGCGGGCCACATCGCCAGTTCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: ASSVASAAGGAS*ALPRATSPVPW Trigger: CCAGGGAACTGGCGATGTGGCCCGCGGGAGCGCCAAGGAAGCGCCTCCTGCAGCTGAGGCAACGGAGGAGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058652.6 |
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