Pregenerated sensors for HS3ST2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046321Ensembl transcript IDs: ENSMUST00000084628.5, ENSMUST00000206880.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGATTATGTGCTTTTGTCCGCAGGGAGCAGGGAGAGTCACAGAGTaGTTTTCAAAGATATCGTCGTCCTCCGAGCACAGTGGAGACCAC | + |
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Preference number: 1 (lower is better) Translates to: QIMCFCPQGAGRVTE*FSKISSSSEHSGDH Trigger: GTGGTCTCCACTGTGCTCGGAGGACGACGATATCTTTGAAAAGCACTCTGTGACTCTCCCTGCTCCCTGCGGACAAAAGCACATAATCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CCA 90 bp | TTGAAGTCACTGGCTTATTTCAGCATCAGAGTCCGTCTCCTGGAGTaGACAGAGAGGGGTTTGGGGCTCTGCACACTGTTGATGAACTGC | + |
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Preference number: 1 (lower is better) Translates to: LKSLAYFSIRVRLLE*TERGLGLCTLLMNC Trigger: GCAGTTCATCAACAGTGTGCAGAGCCCCAAACCCCTCTCTGTCCACTCCAGGAGACGGACTCTGATGCTGAAATAAGCCAGTGACTTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CCA 90 bp | ATCCTTTCTTCTTACAGTAATTCCCCAGGACCATTCATGGGCAGATaGGAGCAGATTCTAGAACTGGATGGGTGTGCCAGAAGCAGACAG | + |
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Preference number: 1 (lower is better) Translates to: ILSSYSNSPGPFMGR*EQILELDGCARSRQ Trigger: CTGTCTGCTTCTGGCACACCCATCCAGTTCTAGAATCTGCTCCCATCTGCCCATGAATGGTCCTGGGGAATTACTGTAAGAAGAAAGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CCA 90 bp | TATAAAGGTGTGTCTGCGAAGATGCTGTGCAGGAGACCACACATGTaGGGGAAGGGTTACAGATCACCAATACGCATACACAGTGAGCAT | + |
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Preference number: 1 (lower is better) Translates to: YKGVSAKMLCRRPHM*GKGYRSPIRIHSEH Trigger: ATGCTCACTGTGTATGCGTATTGGTGATCTGTAACCCTTCCCCCACATGTGTGGTCTCCTGCACAGCATCTTCGCAGACACACCTTTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| 3UTR TCA 90 bp | AAGCTCAGAGGGAAGGTACATGCCACTTGGAATTACGCCCACCACTaGGTGTACAGTGTTGGGATGAACTACTGTTCTCACATAACAGAG | + |
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Preference number: 1 (lower is better) Translates to: KLRGKVHATWNYAHH*VYSVGMNYCSHITE Trigger: CTCTGTTATGTGAGAACAGTAGTTCATCCCAACACTGTACACTCAGTGGTGGGCGTAATTCCAAGTGGCATGTACCTTCCCTCTGAGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CCA 90 bp | GGTACATGCCACTTGGAATTACGCCCACCACTGAGTGTACAGTGTTaGGATGAACTACTGTTCTCACATAACAGAGCCATCTCTACTCAG | + |
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Preference number: 1 (lower is better) Translates to: GTCHLELRPPLSVQC*DELLFSHNRAISTQ Trigger: CTGAGTAGAGATGGCTCTGTTATGTGAGAACAGTAGTTCATCCCAACACTGTACACTCAGTGGTGGGCGTAATTCCAAGTGGCATGTACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR GCA 90 bp | ACACGAGAGAGCCATATTTATTTCACATGGACAAGCATGATCCCGTaGATGCTGAACATGAAAGCTCGCGTGAAGAAAGTACCCGTAACA | + |
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Preference number: 1 (lower is better) Translates to: TRESHIYFTWTSMIP*MLNMKARVKKVPVT Trigger: TGTTACGGGTACTTTCTTCACGCGAGCTTTCATGTTCAGCATGCACGGGATCATGCTTGTCCATGTGAAATAAATATGGCTCTCTCGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR-3UTR TCA 90 bp | TCCCCAGGACCATTCATGGGCAGATGGGAGCAGATTCTAGAACTGGATGGGTGTTCATGGGGTTCAAGATaGGAAGAGGGGCTGGAGATG | + |
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Preference number: 2 (lower is better) Translates to: SPGPFMGRWEQILELDGCSWGSR*EEGLEM Trigger: CATCTCCAGCCCCTCTTCTCATCTTGAACCCCATGA...ACACCCATCCAGTTCTAGAATCTGCTCCCATCTGCCCATGAATGGTCCTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR-3UTR CCA 90 bp | GAAGTCACTGGCTTATTTCAGCATCAGAGTCCGTCTCCTGGAGTGGACAGAGAGGATGAGAAGAGGGGCTaGAGATGGGGGTCAGGATCT | + |
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Preference number: 2 (lower is better) Translates to: EVTGLFQHQSPSPGVDREDEKRG*RWGSGS Trigger: AGATCCTGACCCCCATCTCCAGCCCCTCTTCTCATC...CTCTCTGTCCACTCCAGGAGACGGACTCTGATGCTGAAATAAGCCAGTGACTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR-3UTR GCA 90 bp | CCGTCTCCTGGAGTGGACAGAGAGGGGTTTGGGGCTCTGCACACTGTTGATGAAAGAACTGGATGGGTGTaGCAGAAGCAGACAGAATTT | + |
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Preference number: 2 (lower is better) Translates to: PSPGVDREGFGALHTVDERTGWV*QKQTEF Trigger: AAATTCTGTCTGCTTCTGGCACACCCATCCAGTTCT...TTCATCAACAGTGTGCAGAGCCCCAAACCCCTCTCTGTCCACTCCAGGAGACGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR-3UTR CCA 90 bp | TCAGAGTCCGTCTCCTGGAGTGGACAGAGAGGGGTTTGGGGCTCTGCACACTGTCTGAGTGTACAGTGTTaGGATGAACTACTGTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: SESVSWSGQRGVWGSAHCLSVQC*DELLFS Trigger: TGAGAACAGTAGTTCATCCCAACACTGTACACTCAG...ACAGTGTGCAGAGCCCCAAACCCCTCTCTGTCCACTCCAGGAGACGGACTCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR-3UTR TCA 90 bp | AACCTTAAGCAAAGCTCTCTGGGAGAAATCTCATTCTTCACTCCCAGATCATCCCCCCCAAACCTTCCCTaGGTACCAACAGCTCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: NLKQSSLGEISFFTPRSSPPNLP*VPTALL Trigger: CAGAAGAGCTGTTGGTACTCAGGGAAGGTTTGGGGG...GGATGATCTGGGAGTGAAGAATGAGATTTCTCCCAGAGAGCTTTGCTTAAGGTT 49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| 3UTR CAA 90 bp | AAAGCTCGCGTGAAGAAAGTACCCGTAACAGCAGATTATGTGCTTTaGTCCGCAGGGAGCAGGGAGAGTCACAGAGTGCTTTTCAAAGAT | + |
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Preference number: 2 (lower is better) Translates to: KARVKKVPVTADYVL*SAGSRESHRVLFKD Trigger: ATCTTTGAAAAGCACTCTGTGACTCTCCCTGCTCCCTGCGGACAAAAGCACATAATCTGCTGTTACGGGTACTTTCTTCACGCGAGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR-3UTR GCA 90 bp | CACAACCTTAAGCAAAGCTCTCTGGGAGAAATCTCATTCTTCACTCCCAGATCAGTGTTCTCTTCTTCATaGAGAAGGCCCCTGTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: HNLKQSSLGEISFFTPRSVFSSS*RRPLSP Trigger: AGGAGACAGGGGCCTTCTGCATGAAGAAGAGAACAC...TGATCTGGGAGTGAAGAATGAGATTTCTCCCAGAGAGCTTTGCTTAAGGTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| 3UTR CAA 90 bp | AGAAGCAGACAGAATTTCCTGGACAGAGCAGGAACCACCAGTCTCTaGGACTTTATTCAGTTTTCTGGTTCCAAGATGAACTATCATGGG | + |
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Preference number: 2 (lower is better) Translates to: RSRQNFLDRAGTTSL*DFIQFSGSKMNYHG Trigger: CCCATGATAGTTCATCTTGGAACCAGAAAACTGAATAAAGTCCAAGAGACTGGTGGTTCCTGCTCTGTCCAGGAAATTCTGTCTGCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR GCA 72 bp | CTGGAGATGGGGGTCAGGATCTCTGGGAGCAAACCTTaGGGAAGAGACAAGAGTAGAGCCCTTGTACCTTGG | + |
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Preference number: 3 (lower is better) Translates to: LEMGVRISGSKP*GRDKSRALVPW Trigger: CCAAGGTACAAGGGCTCTACTCTTGTCTCTTCCGCAAGGTTTGCTCCCAGAGATCCTGACCCCCATCTCCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR GCA 72 bp | GGGCAGATGGGAGCAGATTCTAGAACTGGATGGGTGTaGCAGAAGCAGACAGAATTTCCTGGACAGAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: GQMGADSRTGWV*QKQTEFPGQSR Trigger: CCTGCTCTGTCCAGGAAATTCTGTCTGCTTCTGGCACACCCATCCAGTTCTAGAATCTGCTCCCATCTGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR TCA 72 bp | GGGAAGGTACATGCCACTTGGAATTACGCCCACCACTaGGTGTACAGTGTTGGGATGAACTACTGTTCTCAC | + |
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Preference number: 3 (lower is better) Translates to: GKVHATWNYAHH*VYSVGMNYCSH Trigger: GTGAGAACAGTAGTTCATCCCAACACTGTACACTCAGTGGTGGGCGTAATTCCAAGTGGCATGTACCTTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CCA 72 bp | ATTCATGGGCAGATGGGAGCAGATTCTAGAACTGGATaGGTGTGCCAGAAGCAGACAGAATTTCCTGGACAG | + |
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Preference number: 3 (lower is better) Translates to: IHGQMGADSRTG*VCQKQTEFPGQ Trigger: CTGTCCAGGAAATTCTGTCTGCTTCTGGCACACCCATCCAGTTCTAGAATCTGCTCCCATCTGCCCATGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CCA 72 bp | TCTTACAGTAATTCCCCAGGACCATTCATGGGCAGATaGGAGCAGATTCTAGAACTGGATGGGTGTGCCAGA | + |
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Preference number: 3 (lower is better) Translates to: SYSNSPGPFMGR*EQILELDGCAR Trigger: TCTGGCACACCCATCCAGTTCTAGAATCTGCTCCCATCTGCCCATGAATGGTCCTGGGGAATTACTGTAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR GCA 72 bp | AATACTCCTTATAAAGGTGTGTCTGCGAAGATGCTGTaGAGGAGACCACACATGTGGGGGAAGGGTTACAGA | + |
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Preference number: 3 (lower is better) Translates to: NTPYKGVSAKML*RRPHMWGKGYR Trigger: TCTGTAACCCTTCCCCCACATGTGTGGTCTCCTGCACAGCATCTTCGCAGACACACCTTTATAAGGAGTATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| 3UTR CCA 72 bp | CGGTCTGTTTCGTGTGTGGTTCAGTTTGTTATGAGATaGCAAAGCCTTCTGTGTTCTCTTCTTCATGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: RSVSCVVQFVMR*QSLLCSLLHAE Trigger: TTCTGCATGAAGAAGAGAACACAGAAGGCTTTGCCATCTCATAACAAACTGAACCACACACGAAACAGACCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR CCA 90 bp | GCGAAGATGCTGTGCAGGAGACCACACATGTGGGGGAAGGGTTACAGATCACCACCGAGCAGGCGGCTCTaGCCCAGACCGTCGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: AKMLCRRPHMWGKGYRSPPSRRL*PRPSQQ Trigger: CTGCTGCGACGGTCTGGGCCAGAGCCGCCTGCTCGG...TGGTGATCTGTAACCCTTCCCCCACATGTGTGGTCTCCTGCACAGCATCTTCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR CCA 90 bp | GAAGTCACTGGCTTATTTCAGCATCAGAGTCCGTCTCCTGGAGTGGACAGAGAGCCGAGCAGGCGGCTCTaGCCCAGACCGTCGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: EVTGLFQHQSPSPGVDREPSRRL*PRPSQQ Trigger: CTGCTGCGACGGTCTGGGCCAGAGCCGCCTGCTCGG...CTCTCTGTCCACTCCAGGAGACGGACTCTGATGCTGAAATAAGCCAGTGACTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | TTAAGCTCAGAGGGAAGGTACATGCCACTTGGAATTACGCCCACCACTGAGTGTTCTGGCCGCTTGCGCTaGGGCCGCGGAGGCAACGCG | + |
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Preference number: 4 (lower is better) Translates to: LSSEGRYMPLGITPTTECSGRLR*GRGGNA Trigger: CGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGA...ACACTCAGTGGTGGGCGTAATTCCAAGTGGCATGTACCTTCCCTCTGAGCTTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | AGAGTCCGTCTCCTGGAGTGGACAGAGAGGGGTTTGGGGCTCTGCACACTGTTGCCCACAATGAGGGCTTaGGGCAGCCGTTTGGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: RVRLLEWTERGLGLCTLLPTMRA*GSRLVP Trigger: AGGCACCAAACGGCTGCCCCAAGCCCTCATTGTGGG...CAACAGTGTGCAGAGCCCCAAACCCCTCTCTGTCCACTCCAGGAGACGGACTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR TCA 90 bp | CAGCATCAGAGTCCGTCTCCTGGAGTGGACAGAGAGGGGTTTGGGGCTCTGCACATGCCCAGGAAGTCCTaGATACGACCCATCTCACCA | + |
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Preference number: 4 (lower is better) Translates to: QHQSPSPGVDREGFGALHMPRKS*IRPISP Trigger: TGGTGAGATGGGTCGTATTCAGGACTTCCTGGGCAT...GTGCAGAGCCCCAAACCCCTCTCTGTCCACTCCAGGAGACGGACTCTGATGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR GCA 90 bp | AAGAAAGTACCCGTAACAGCAGATTATGTGCTTTTGTCCGCAGGGAGCAGGGAGAGGCGAAGAGCAGCCTaGGCGCTCTCCGCGGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: KKVPVTADYVLLSAGSRERRRAA*ALSAAE Trigger: CTCAGCCGCGGAGAGCGCGCAGGCTGCTCTTCGCCT...CTCCCTGCTCCCTGCGGACAAAAGCACATAATCTGCTGTTACGGGTACTTTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | GCTTATTTCAGCATCAGAGTCCGTCTCCTGGAGTGGACAGAGAGGGGTTTGGGGACAGGCCCTCGAAGGTaGGGATGTCCGGCTTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: AYFSIRVRLLEWTERGLGTGPRR*GCPASW Trigger: CCAAGAAGCCGGACATCCCCACCTTCGAGGGCCTGT...CCCCAAACCCCTCTCTGTCCACTCCAGGAGACGGACTCTGATGCTGAAATAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | CTTAAGCAAAGCTCTCTGGGAGAAATCTCATTCTTCACTCCCAGATCATCCAGTTCTGGCCGCTTGCGCTaGGGCCGCGGAGGCAACGCG | + |
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Preference number: 4 (lower is better) Translates to: LKQSSLGEISFFTPRSSSSGRLR*GRGGNA Trigger: CGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGA...ACTGGATGATCTGGGAGTGAAGAATGAGATTTCTCCCAGAGAGCTTTGCTTAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR CCA 90 bp | TTAAGCTCAGAGGGAAGGTACATGCCACTTGGAATTACGCCCACCACTGAGTGTGGGAGCCAGAGTGATTaGATCCGGAGAGGCGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: LSSEGRYMPLGITPTTECGSQSD*IRRGAV Trigger: CACCGCGCCTCTCCGGATCCAATCACTCTGGCTCCC...ACACTCAGTGGTGGGCGTAATTCCAAGTGGCATGTACCTTCCCTCTGAGCTTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | TCCCCAGGACCATTCATGGGCAGATGGGAGCAGATTCTAGAACTGGATGGGTGTCTGACGAAGTGGATCTaGGCCAGTGGGAAGTACCGC | + |
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Preference number: 4 (lower is better) Translates to: SPGPFMGRWEQILELDGCLTKWI*ASGKYR Trigger: GCGGTACTTCCCACTGGCCCAGATCCACTTCGTCAG...ACACCCATCCAGTTCTAGAATCTGCTCCCATCTGCCCATGAATGGTCCTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR TCA 90 bp | TCAGAGTCCGTCTCCTGGAGTGGACAGAGAGGGGTTTGGGGCTCTGCACACTGTGGGTCGATCTGTACATaGGTTCTCCCTTTTGATTTG | + |
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Preference number: 4 (lower is better) Translates to: SESVSWSGQRGVWGSAHCGSICT*VLPFDL Trigger: CAAATCAAAAGGGAGAACTCATGTACAGATCGACCC...ACAGTGTGCAGAGCCCCAAACCCCTCTCTGTCCACTCCAGGAGACGGACTCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | TCTGGGAGCAAACCTTGCGGAAGAGACAAGAGTAGAGCCCTTGTACCTTGGAGATCTCCACTGACGAAGTaGATCTGGGCCAGTGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SGSKPCGRDKSRALVPWRSPLTK*IWASGK Trigger: CTTCCCACTGGCCCAGATCCACTTCGTCAGTGGAGA...TCTCCAAGGTACAAGGGCTCTACTCTTGTCTCTTCCGCAAGGTTTGCTCCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR GCA 90 bp | TCATGCAGAAGGCCCCTGTCTCCTGCCTGTGGGCTTCCTCCTAAGGCTTGCTGTGGCAAATCCTGTTTCTaGTTGTCTTACACAGTCCTA | + |
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Preference number: 4 (lower is better) Translates to: SCRRPLSPACGLPPKACCGKSCF*LSYTVL Trigger: TAGGACTGTGTAAGACAAGCAGAAACAGGATTTGCC...ACAGCAAGCCTTAGGAGGAAGCCCACAGGCAGGAGACAGGGGCCTTCTGCATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR CCA 90 bp | CTTAAGCAAAGCTCTCTGGGAGAAATCTCATTCTTCACTCCCAGATCATCCAGTGGGAGCCAGAGTGATTaGATCCGGAGAGGCGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: LKQSSLGEISFFTPRSSSGSQSD*IRRGAV Trigger: CACCGCGCCTCTCCGGATCCAATCACTCTGGCTCCC...ACTGGATGATCTGGGAGTGAAGAATGAGATTTCTCCCAGAGAGCTTTGCTTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR CCA 90 bp | CGAGAGATCCTTTCTTCTTACAGTAATTCCCCAGGACCATTCATGGGCAGATGGGCGTGTAGTCAGAGATaGCTCGGGTCACTGGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: REILSSYSNSPGPFMGRWACSQR*LGSLGS Trigger: GGAACCCAGTGACCCGAGCCATCTCTGACTACACGC...CCATCTGCCCATGAATGGTCCTGGGGAATTACTGTAAGAAGAAAGGATCTCTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR TCA 90 bp | ATGGACAAGCATGATCCCGTGCATGCTGAACATGAAAGCTCGCGTGAAGAAAGTGAGGGGCTTCTTGAGTaGCGAAATAGCTGGGCGTCT | + |
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Preference number: 4 (lower is better) Translates to: MDKHDPVHAEHESSREESEGLLE*RNSWAS Trigger: AGACGCCCAGCTATTTCGTCACTCAAGAAGCCCCTC...ACTTTCTTCACGCGAGCTTTCATGTTCAGCATGCACGGGATCATGCTTGTCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR GCA 90 bp | CAGAGGGAAGGTACATGCCACTTGGAATTACGCCCACCACTGAGTGTACAGTGTAGCCAGCTTTCCAGGTaGAGTGCATACATGCCAATG | + |
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Preference number: 4 (lower is better) Translates to: QREGTCHLELRPPLSVQCSQLSR*SAYMPM Trigger: CATTGGCATGTATGCACTGCACCTGGAAAGCTGGCT...ACACTGTACACTCAGTGGTGGGCGTAATTCCAAGTGGCATGTACCTTCCCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR GCA 90 bp | TCTGGGAGCAAACCTTGCGGAAGAGACAAGAGTAGAGCCCTTGTACCTTGGAGATTCTCCCTTTTGATTTaGCCAGGCATCGAGGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SGSKPCGRDKSRALVPWRFSLLI*PGIEAG Trigger: TCCTGCCTCGATGCCTGGGCAAATCAAAAGGGAGAA...TCTCCAAGGTACAAGGGCTCTACTCTTGTCTCTTCCGCAAGGTTTGCTCCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | AGCAGGAACCACCAGTCTCTTGGACTTTATTCAGTTTTCTGGTTCCAAGATGAATTCGCCAGAAGTTTCTaGCCGCTTGCGCTGGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: SRNHQSLGLYSVFWFQDEFARSF*PLALGP Trigger: CGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAA...TTCATCTTGGAACCAGAAAACTGAATAAAGTCCAAGAGACTGGTGGTTCCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CCA 90 bp | CTTAAGCAAAGCTCTCTGGGAGAAATCTCATTCTTCACTCCCAGATCATCCAGTCCCACAATGAGGGCTTaGGGCAGCCGTTTGGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: LKQSSLGEISFFTPRSSSPTMRA*GSRLVP Trigger: AGGCACCAAACGGCTGCCCCAAGCCCTCATTGTGGG...ACTGGATGATCTGGGAGTGAAGAATGAGATTTCTCCCAGAGAGCTTTGCTTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR TCA 90 bp | GGAACCACCAGTCTCTTGGACTTTATTCAGTTTTCTGGTTCCAAGATGAACTATTTCGGGGAGCCAGAGTaGTTGGATCCGGAGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: GTTSLLDFIQFSGSKMNYFGEPE*LDPERR Trigger: GCGCCTCTCCGGATCCAATCACTCTGGCTCCCCGAA...ATAGTTCATCTTGGAACCAGAAAACTGAATAAAGTCCAAGAGACTGGTGGTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR TCA 90 bp | GTTCAGTTTGTTATGAGATGGCAAAGCCTTCTGTGTTCTCTTCTTCATGCAGAATTCGGGGAGCCAGAGTaGTTGGATCCGGAGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: VQFVMRWQSLLCSLLHAEFGEPE*LDPERR Trigger: GCGCCTCTCCGGATCCAATCACTCTGGCTCCCCGAA...TTCTGCATGAAGAAGAGAACACAGAAGGCTTTGCCATCTCATAACAAACTGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR TCA 90 bp | CGAGAGATCCTTTCTTCTTACAGTAATTCCCCAGGACCATTCATGGGCAGATGGCAGCTTGGTGTCTCGTaGCATGTTGAAGATCCGTCG | + |
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Preference number: 4 (lower is better) Translates to: REILSSYSNSPGPFMGRWQLGVS*HVEDPS Trigger: CGACGGATCTTCAACATGTCACGAGACACCAAGCTG...CCATCTGCCCATGAATGGTCCTGGGGAATTACTGTAAGAAGAAAGGATCTCTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CAA 72 bp | GTGAAGAAAGTACCCGTAACAGCAGATTATGTGCTTTaGTCCGCAGGGAGCAGGGAGAGTCACAGAGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: VKKVPVTADYVL*SAGSRESHRVL Trigger: AAGCACTCTGTGACTCTCCCTGCTCCCTGCGGACAAAAGCACATAATCTGCTGTTACGGGTACTTTCTTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| 3UTR CAA 72 bp | GAAATCTCATTCTTCACTCCCAGATCATCCAGTCCCTaGAAGCTCCAAAGGGAAGTGAGACTTCTCTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: EISFFTPRSSSP*KLQREVRLLCP Trigger: GGGGCAGAGAAGTCTCACTTCCCTTTGGAGCTTCAAGGGACTGGATGATCTGGGAGTGAAGAATGAGATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR GCA 90 bp | CGAGAGATCCTTTCTTCTTACAGTAATTCCCCAGGACCATTCATGGGCAGATGGGCTTTCCAGGTGCAGTaGATACATGCCAATGCGGAT | + |
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Preference number: 4 (lower is better) Translates to: REILSSYSNSPGPFMGRWAFQVQ*IHANAD Trigger: ATCCGCATTGGCATGTATGCACTGCACCTGGAAAGC...CCATCTGCCCATGAATGGTCCTGGGGAATTACTGTAAGAAGAAAGGATCTCTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR TCA 90 bp | GCAGGAACCACCAGTCTCTTGGACTTTATTCAGTTTTCTGGTTCCAAGATGAACATGAGTTCTCCCTTTTaGTTTGCCCAGGCATCGAGG | + |
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Preference number: 4 (lower is better) Translates to: AGTTSLLDFIQFSGSKMNMSSPF*FAQASR Trigger: CCTCGATGCCTGGGCAAATCAAAAGGGAGAACTCAT...GTTCATCTTGGAACCAGAAAACTGAATAAAGTCCAAGAGACTGGTGGTTCCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR GCA 90 bp | TTTGTTATGAGATGGCAAAGCCTTCTGTGTTCTCTTCTTCATGCAGAAGGCCCCATGGATTTCATCCTGTaGTTTCCCCTCTCTGTCTTA | + |
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Preference number: 4 (lower is better) Translates to: FVMRWQSLLCSLLHAEGPMDFIL*FPLSVL Trigger: TAAGACAGAGAGGGGAAAGCACAGGATGAAATCCAT...GGGGCCTTCTGCATGAAGAAGAGAACACAGAAGGCTTTGCCATCTCATAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR TCA 90 bp | GTGTGTGGTTCAGTTTGTTATGAGATGGCAAAGCCTTCTGTGTTCTCTTCTTCAATGAGCTTGATAATGTaGTGGATTTCATCCTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: VCGSVCYEMAKPSVFSSSMSLIM*WISSCA Trigger: AGCACAGGATGAAATCCATCACATTATCAAGCTCAT...TGAAGAAGAGAACACAGAAGGCTTTGCCATCTCATAACAAACTGAACCACACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS GCA 90 bp | CGGGGGATCACACGGGCGGGACTTCGCCAGAAGTTTCTGGCCGCTTaGGCTGGGGCCGCGGAGGCAACGCGGTGCGCCGAGCAGGCGGCT | + |
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Preference number: 5 (lower is better) Translates to: RGITRAGLRQKFLAA*AGAAEATRCAEQAA Trigger: AGCCGCCTGCTCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAAGTCCCGCCCGTGTGATCCCCCG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS GCA 90 bp | CAGAAGTTTCTGGCCGCTTGCGCTGGGGCCGCGGAGGCAACGCGGTaGGCCGAGCAGGCGGCTCTGGCCCAGACCGTCGCAGCAGCACAG | + |
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Preference number: 5 (lower is better) Translates to: QKFLAACAGAAEATR*AEQAALAQTVAAAQ Trigger: CTGTGCTGCTGCGACGGTCTGGGCCAGAGCCGCCTGCTCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CCA 90 bp | GATCACACGGGCGGGACTTCGCCAGAAGTTTCTGGCCGCTTGCGCTaGGGCCGCGGAGGCAACGCGGTGCGCCGAGCAGGCGGCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: DHTGGTSPEVSGRLR*GRGGNAVRRAGGSG Trigger: GCCAGAGCCGCCTGCTCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAAGTCCCGCCCGTGTGATC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS-3UTR CAA 90 bp | TCAGAGTCCGTCTCCTGGAGTGGACAGAGAGGGGTTTGGGGCTCTGCACACTGTGAAGTTTCTGGCCGCTaGCGCTGGGGCCGCGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SESVSWSGQRGVWGSAHCEVSGR*RWGRGG Trigger: GCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTC...ACAGTGTGCAGAGCCCCAAACCCCTCTCTGTCCACTCCAGGAGACGGACTCTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS CCA 90 bp | TTTCTTGACGCCCACAATGAGGGCTTGGGGCAGCCGTTTGGTGCCTaGCTTCGGGGAGCCAGAGTGATTGGATCCGGAGAGGCGCGGTGC | + |
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Preference number: 5 (lower is better) Translates to: FLDAHNEGLGQPFGA*LRGARVIGSGEARC Trigger: GCACCGCGCCTCTCCGGATCCAATCACTCTGGCTCCCCGAAGCCAGGCACCAAACGGCTGCCCCAAGCCCTCATTGTGGGCGTCAAGAAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS TCA 90 bp | AGCACAGGAAGCTGTAACACAGGTAAGTGCAGGACAAGGACAGTGTaGAGGCGAAGAGCAGCCTGCGCGCTCTCCGCGGCTGAGGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: STGSCNTGKCRTRTV*RRRAACALSAAEVA Trigger: GGCCACCTCAGCCGCGGAGAGCGCGCAGGCTGCTCTTCGCCTTCACACTGTCCTTGTCCTGCACTTACCTGTGTTACAGCTTCCTGTGCT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CAA 90 bp | AGCCTTCTGTGTTCTCTTCTTCATGCAGAAGGCCCCTGTCTCCTGCCTGTGGGCGCCCACAATGAGGGCTaGGGGCAGCCGTTTGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: SLLCSLLHAEGPCLLPVGAHNEG*GQPFGA Trigger: GGCACCAAACGGCTGCCCCAAGCCCTCATTGTGGGC...GCCCACAGGCAGGAGACAGGGGCCTTCTGCATGAAGAAGAGAACACAGAAGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS GCA 90 bp | GATCTGGGCCAGTGGGAAGTACCGCAGCCAGCTTTCCAGGTGCAGTaGATACATGCCAATGCGGATAGCGTTCCAAGACACGTCCACCAG | + |
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Preference number: 5 (lower is better) Translates to: DLGQWEVPQPAFQVQ*IHANADSVPRHVHQ Trigger: CTGGTGGACGTGTCTTGGAACGCTATCCGCATTGGCATGTATGCACTGCACCTGGAAAGCTGGCTGCGGTACTTCCCACTGGCCCAGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CAA 90 bp | GGGGTCAGGATCTCTGGGAGCAAACCTTGCGGAAGAGACAAGAGTAGAGCCCTTCGAGTTCCCCCTTTCTaGACGCCCACAATGAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: GVRISGSKPCGRDKSRALRVPPF*TPTMRA Trigger: AGCCCTCATTGTGGGCGTCAAGAAAGGGGGAACTCG...AAGGGCTCTACTCTTGTCTCTTCCGCAAGGTTTGCTCCCAGAGATCCTGACCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CAA 90 bp | CTTCATTTCATCAGAATATGTCACACTCCCCTGGAACCATGCAAAAATACTCCTGAAGTTTCTGGCCGCTaGCGCTGGGGCCGCGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: LHFIRICHTPLEPCKNTPEVSGR*RWGRGG Trigger: GCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTC...AGGAGTATTTTTGCATGGTTCCAGGGGAGTGTGACATATTCTGATGAAATGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS-3UTR CAA 90 bp | TCTCTTGGACTTTATTCAGTTTTCTGGTTCCAAGATGAACTATCATGGGGTTCAGCCCACAATGAGGGCTaGGGGCAGCCGTTTGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: SLGLYSVFWFQDELSWGSAHNEG*GQPFGA Trigger: GGCACCAAACGGCTGCCCCAAGCCCTCATTGTGGGC...TGAACCCCATGATAGTTCATCTTGGAACCAGAAAACTGAATAAAGTCCAAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CAA 90 bp | AGCAGGAACCACCAGTCTCTTGGACTTTATTCAGTTTTCTGGTTCCAAGATGAAGTTCTCCCTTTTGATTaGCCCAGGCATCGAGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: SRNHQSLGLYSVFWFQDEVLPFD*PRHRGR Trigger: CCTGCCTCGATGCCTGGGCAAATCAAAAGGGAGAAC...TTCATCTTGGAACCAGAAAACTGAATAAAGTCCAAGAGACTGGTGGTTCCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS-3UTR CAA 90 bp | AAGCAGACAGAATTTCCTGGACAGAGCAGGAACCACCAGTCTCTTGGACTTTATCATGAGTTCTCCCTTTaGATTTGCCCAGGCATCGAG | + |
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Preference number: 5 (lower is better) Translates to: KQTEFPGQSRNHQSLGLYHEFSL*ICPGIE Trigger: CTCGATGCCTGGGCAAATCAAAAGGGAGAACTCATG...ATAAAGTCCAAGAGACTGGTGGTTCCTGCTCTGTCCAGGAAATTCTGTCTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS GCA 72 bp | CTGGCCGCTTGCGCTGGGGCCGCGGAGGCAACGCGGTaGGCCGAGCAGGCGGCTCTGGCCCAGACCGTCGCA | + |
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Preference number: 6 (lower is better) Translates to: LAACAGAAEATR*AEQAALAQTVA Trigger: TGCGACGGTCTGGGCCAGAGCCGCCTGCTCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CAA 90 bp | CCGGGGGATCACACGGGCGGGACTTCGCCAGAAGTTTCTGGCCGCTaGCGCTGGGGCCGCGGAGGCAACGCGGTGCGCCGAGCAGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: PGDHTGGTSPEVSGR*RWGRGGNAVRRAGG Trigger: GCCGCCTGCTCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAAGTCCCGCCCGTGTGATCCCCCGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CCA 72 bp | GGCGGGACTTCGCCAGAAGTTTCTGGCCGCTTGCGCTaGGGCCGCGGAGGCAACGCGGTGCGCCGAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: GGTSPEVSGRLR*GRGGNAVRRAG Trigger: GCCTGCTCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAAGTCCCGCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS GCA 72 bp | ACACGGGCGGGACTTCGCCAGAAGTTTCTGGCCGCTTaGGCTGGGGCCGCGGAGGCAACGCGGTGCGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: TRAGLRQKFLAA*AGAAEATRCAE Trigger: CTCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAAGTCCCGCCCGTGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CAA 72 bp | CACACGGGCGGGACTTCGCCAGAAGTTTCTGGCCGCTaGCGCTGGGGCCGCGGAGGCAACGCGGTGCGCCGA | + |
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Preference number: 6 (lower is better) Translates to: HTGGTSPEVSGR*RWGRGGNAVRR Trigger: TCGGCGCACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAAGTCCCGCCCGTGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CCA 72 bp | GGGGGATCACACGGGCGGGACTTCGCCAGAAGTTTCTaGCCGCTTGCGCTGGGGCCGCGGAGGCAACGCGGT | + |
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Preference number: 6 (lower is better) Translates to: GGSHGRDFARSF*PLALGPRRQRG Trigger: ACCGCGTTGCCTCCGCGGCCCCAGCGCAAGCGGCCAGAAACTTCTGGCGAAGTCCCGCCCGTGTGATCCCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS TCA 72 bp | GGCAGCCGTTTGGTGCCTGGCTTCGGGGAGCCAGAGTaGTTGGATCCGGAGAGGCGCGGTGCTGGAGCGGCA | + |
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Preference number: 6 (lower is better) Translates to: GSRLVPGFGEPE*LDPERRGAGAA Trigger: TGCCGCTCCAGCACCGCGCCTCTCCGGATCCAATCACTCTGGCTCCCCGAAGCCAGGCACCAAACGGCTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CCA 72 bp | GCCCACAATGAGGGCTTGGGGCAGCCGTTTGGTGCCTaGCTTCGGGGAGCCAGAGTGATTGGATCCGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: AHNEGLGQPFGA*LRGARVIGSGE Trigger: CTCTCCGGATCCAATCACTCTGGCTCCCCGAAGCCAGGCACCAAACGGCTGCCCCAAGCCCTCATTGTGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CCA 72 bp | CGAGTTCCCCCTTTCTTGACGCCCACAATGAGGGCTTaGGGCAGCCGTTTGGTGCCTGGCTTCGGGGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: RVPPFLTPTMRA*GSRLVPGFGEP Trigger: TGGCTCCCCGAAGCCAGGCACCAAACGGCTGCCCCAAGCCCTCATTGTGGGCGTCAAGAAAGGGGGAACTCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000084628.5 ENSMUST00000206880.2 |
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| CDS CCA 72 bp | GAGCCGCTCTCCACTGACGAAGTGGATCTGGGCCAGTaGGAAGTACCGCAGCCAGCTTTCCAGGTGCAGTGC | + |
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Preference number: 6 (lower is better) Translates to: EPLSTDEVDLGQ*EVPQPAFQVQC Trigger: GCACTGCACCTGGAAAGCTGGCTGCGGTACTTCCCACTGGCCCAGATCCACTTCGTCAGTGGAGAGCGGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS TCA 72 bp | AGCTGTAACACAGGTAAGTGCAGGACAAGGACAGTGTaGAGGCGAAGAGCAGCCTGCGCGCTCTCCGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: SCNTGKCRTRTV*RRRAACALSAA Trigger: AGCCGCGGAGAGCGCGCAGGCTGCTCTTCGCCTTCACACTGTCCTTGTCCTGCACTTACCTGTGTTACAGCT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS GCA 72 bp | CAGTGGGAAGTACCGCAGCCAGCTTTCCAGGTGCAGTaGATACATGCCAATGCGGATAGCGTTCCAAGACAC | + |
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Preference number: 6 (lower is better) Translates to: QWEVPQPAFQVQ*IHANADSVPRH Trigger: GTGTCTTGGAACGCTATCCGCATTGGCATGTATGCACTGCACCTGGAAAGCTGGCTGCGGTACTTCCCACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084628.5 |
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| CDS CAA 90 bp | CTGTCTTACTTAGAGCATTACCTCTGGGGCAAATCCTGTTTCTGCTaGTCTTACACAGTCCTAAGAACACACCGACACTGTACCAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: LSYLEHYLWGKSCFC*SYTVLRTHRHCTSP Trigger: TGGACTGGTACAGTGTCGGTGTGTTCTTAGGACTGTGTAAGACAAGCAGAAACAGGATTTGCCCCAGAGGTAATGCTCTAAGTAAGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS CCA 72 bp | GCTTTCCCCTCTCTGTCTTACTTAGAGCATTACCTCTaGGGCAAATCCTGTTTCTGCTTGTCTTACACAGTC | + |
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Preference number: 6 (lower is better) Translates to: AFPSLSYLEHYL*GKSCFCLSYTV Trigger: GACTGTGTAAGACAAGCAGAAACAGGATTTGCCCCAGAGGTAATGCTCTAAGTAAGACAGAGAGGGGAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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| CDS CAA 72 bp | TTAGAGCATTACCTCTGGGGCAAATCCTGTTTCTGCTaGTCTTACACAGTCCTAAGAACACACCGACACTGT | + |
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Preference number: 6 (lower is better) Translates to: LEHYLWGKSCFC*SYTVLRTHRHC Trigger: ACAGTGTCGGTGTGTTCTTAGGACTGTGTAAGACAAGCAGAAACAGGATTTGCCCCAGAGGTAATGCTCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206880.2 |
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