Pregenerated sensors for HS3ST1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051022Ensembl transcript IDs: ENSMUST00000053116.7, ENSMUST00000117944.2, ENSMUST00000137142.2, ENSMUST00000152057.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGCAGCCGGGTGGGAATaGACAAGCTGGGGCTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQAAGWE*TSWGWA Trigger: GGCCCAGCCCCAGCTTGTGCATTCCCACCCGGCTGC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR GCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGGATCCACCTGGGGGTaGGCCCGGCCTTTGGACTCG | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQGSTWG*ARPLDS Trigger: CGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAATGCACAAGCTGGGGCTaGGCCACCAGCAGCACCGCA | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQCTSWG*ATSSTA Trigger: TGCGGTGCTGCTGGTGGCCCAGCCCCAGCTTGTGCA...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAACCAGGAGCAGCCGGGTaGGAATGCACAAGCTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQPGAAG*ECTSWG Trigger: GCCCCAGCTTGTGCATTCCCACCCGGCTGCTCCTGG...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGGTGCGCCCGGCCTTTaGACTCGTGTAAGCAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQGAPGL*TRVSSG Trigger: ACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAAGTTTGGGATCCACCTaGGGGTGCGCCCGGCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQSLGST*GCARPL Trigger: CAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACT...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR TCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGTGTCTTCTCCACGGTaGGCTGGTGAGGGGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQVSSPR*AGEGRR Trigger: TCTCCTCCCCTCACCAGCTCACCGTGGAGAAGACAC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR GCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGTAAGCAGCGGTCCTTaGCACTGTCCCGCAGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQVSSGP*HCPAGS Trigger: ACTGCCTGCGGGACAGTGGCAAGGACCGCTGCTTAC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGAGGAGAAGGGCATCTaGGTGAGGTACCAGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQEEKGI*VRYQPR Trigger: CCTGGGCTGGTACCTCACCCAGATGCCCTTCTCCTC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR TCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGGTACAGGCTGCGGTTaGGAGCCTTGTAGTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQGTGCG*EPCSPG Trigger: ACCTGGACTACAAGGCTCTCAACCGCAGCCTGTACC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGCAGCAGGCGGATGGTaGGGTTCATGCTGTGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQAAGGW*GSCCGF Trigger: GAATCCACAGCATGAACCCCACCATCCGCCTGCTGC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR TCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGCACTTTGGGCGAAGTaGAATAGGCGGGTGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQALWAK*NRRVSS Trigger: AGAAGACACCCGCCTATTTCACTTCGCCCAAAGTGC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR GCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGCAGCAACATCAGGATaGAGGCTGAGCATCTCTAGC | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQAATSG*RLSISS Trigger: GCTAGAGATGCTCAGCCTGCATCCTGATGTTGCTGC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR GCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGGATGGTGGGGTTCATaGTGTGGATTCTCTCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQGWWGS*CGFSQA Trigger: TGCCTGAGAGAATCCACAGCATGAACCCCACCATCC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR GCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAACCAGTTCAGCATGTGTaGATGGTACAGGCTGCGGTT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQPVQHV*MVQAAV Trigger: AACCGCAGCCTGTACCATGCACACATGCTGAACTGG...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGAGGTCCTCAATGGGTaGATAGGGCTTGTGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQEVLNG*IGLVLL Trigger: CAGAAGCACAAGCCCTATCCACCCATTGAGGACCTC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAATCGCCATCCACAATGTaGATGTGGCCCAACGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQSPSTM*MWPNGK Trigger: TTTCCCGTTGGGCCACATCCACATTGTGGATGGCGA...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR GCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGACCTCGTTTTCAGCTaGAGCAACATCAGGATGCAG | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQDLVFS*SNIRMQ Trigger: CTGCATCCTGATGTTGCTGCAGCTGAAAACGAGGTC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGTGGGGTTCATGCTGTaGATTCTCTCAGGCACTTTG | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQVGFML*ILSGTL Trigger: CAAAGTGCCTGAGAGAATCCACAGCATGAACCCCAC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAATTCAGCATGTGTGCATaGTACAGGCTGCGGTTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQFSMCA*YRLRLR Trigger: TCTCAACCGCAGCCTGTACCATGCACACATGCTGAA...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAATTCTCCGGTGTCCTCTaGGAGAATAATCACCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQFSGVL*ENNHLP Trigger: AGGAAGGTGATTATTCTCCCAGAGGACACCGGAGAA...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAACGAGGCGTTGATCTGTaGAGAAAGCTTCAGGAATCT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQRGVDL*RKLQES Trigger: AGATTCCTGAAGCTTTCTCCACAGATCAACGCCTCG...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CCA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAAATCTTTCGACCTTCTaGATCTCAGGGAAAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQNLSTF*ISGKGS Trigger: AGACCCTTTCCCTGAGATCCAGAAGGTCGAAAGATT...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS GCA 90 bp | AGCTCCTGCTGTTTGAGCCCCGGGCCAGGAGCAGCCGGGTGGGAATaGACAAGCTGGGGCTGGGCCACCAGCAGCACCGCACCCAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: SSCCLSPGPGAAGWE*TSWGWATSSTAPRS Trigger: GCTCCTGGGTGCGGTGCTGCTGGTGGCCCAGCCCCAGCTTGTGCATTCCCACCCGGCTGCTCCTGGCCCGGGGCTCAAACAGCAGGAGCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS GCA 90 bp | TCTCCGGTGTCCTCTGGGAGAATAATCACCTTCCTCAGAAGCTCCTaGTGTTTGAGCCCCGGGCCAGGAGCAGCCGGGTGGGAATGCACA | + |
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Preference number: 5 (lower is better) Translates to: SPVSSGRIITFLRSS*CLSPGPGAAGWECT Trigger: TGTGCATTCCCACCCGGCTGCTCCTGGCCCGGGGCTCAAACAGCAGGAGCTTCTGAGGAAGGTGATTATTCTCCCAGAGGACACCGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CCA 90 bp | GTTTATCAAGTAGTTTGGGATCCACCTGGGGGTGCGCCCGGCCTTTaGACTCGTGTAAGCAGCGGTCCTTGCCACTGTCCCGCAGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: VYQVVWDPPGGAPGL*TRVSSGPCHCPAGS Trigger: ACTGCCTGCGGGACAGTGGCAAGGACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACTTGATAAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS GCA 90 bp | CGGGTACCACCCTTGCGCACCCCAATGATGATGGTCTGTGGCAGCTaGTGTGTGGAACCATTGGATGCTGTGCCTTCTCCGGTGTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RVPPLRTPMMMVCGS*CVEPLDAVPSPVSS Trigger: AGAGGACACCGGAGAAGGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATCATCATTGGGGTGCGCAAGGGTGGTACCCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS TCA 90 bp | AGAAATGGACCTCGTTTTCAGCTGCAGCAACATCAGGATGCAGGCTaGGCATCTCTAGCAGGGCTCGGGTACCACCCTTGCGCACCCCAA | + |
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Preference number: 5 (lower is better) Translates to: RNGPRFQLQQHQDAG*ASLAGLGYHPCAPQ Trigger: TTGGGGTGCGCAAGGGTGGTACCCGAGCCCTGCTAGAGATGCTCAGCCTGCATCCTGATGTTGCTGCAGCTGAAAACGAGGTCCATTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 |
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| CDS-3UTR CAA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGGGTGCGCCCGGCCTTaGGACTCGTGTAAGCAGCGG | + |
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Preference number: 5 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQGCARP*DSCKQR Trigger: CCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS TCA 90 bp | AAAAACGCAGCCAGTTCAGCATGTGTGCATGGTACAGGCTGCGGTTaGGAGCCTTGTAGTCCAGGTTCAGCCGACCGTCCCGCATTAGGA | + |
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Preference number: 5 (lower is better) Translates to: KNAASSACVHGTGCG*EPCSPGSADRPALG Trigger: TCCTAATGCGGGACGGTCGGCTGAACCTGGACTACAAGGCTCTCAACCGCAGCCTGTACCATGCACACATGCTGAACTGGCTGCGTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS GCA 90 bp | CAGTCAAAGAAATGGACCTCGTTTTCAGCTGCAGCAACATCAGGATaGAGGCTGAGCATCTCTAGCAGGGCTCGGGTACCACCCTTGCGC | + |
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Preference number: 5 (lower is better) Translates to: QSKKWTSFSAAATSG*RLSISSRARVPPLR Trigger: GCGCAAGGGTGGTACCCGAGCCCTGCTAGAGATGCTCAGCCTGCATCCTGATGTTGCTGCAGCTGAAAACGAGGTCCATTTCTTTGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 |
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| CDS GCA 90 bp | AAGTATTCGTGCAGTTTATCAAGTAGTTTGGGATCCACCTGGGGGTaGGCCCGGCCTTTGGACTCGTGTAAGCAGCGGTCCTTGCCACTG | + |
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Preference number: 5 (lower is better) Translates to: KYSCSLSSSLGSTWG*ARPLDSCKQRSLPL Trigger: CAGTGGCAAGGACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACTTGATAAACTGCACGAATACTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CCA 90 bp | TGTAGTCCAGGTTCAGCCGACCGTCCCGCATTAGGAGGTCCTCAATaGGTGGATAGGGCTTGTGCTTCTGAAGGTGGTTGTACAACACCT | + |
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Preference number: 5 (lower is better) Translates to: CSPGSADRPALGGPQ*VDRACASEGGCTTP Trigger: AGGTGTTGTACAACCACCTTCAGAAGCACAAGCCCTATCCACCCATTGAGGACCTCCTAATGCGGGACGGTCGGCTGAACCTGGACTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CAA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAATGTAAGCAGCGGTCCTaGCCACTGTCCCGCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQCKQRS*PLSRRQ Trigger: CTGCCTGCGGGACAGTGGCAAGGACCGCTGCTTACA...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS GCA 90 bp | CCCAATGATGATGGTCTGTGGCAGCTGCTGTGTGGAACCATTGGATaGTGTGCCTTCTCCGGTGTCCTCTGGGAGAATAATCACCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PNDDGLWQLLCGTIG*CAFSGVLWENNHLP Trigger: AGGAAGGTGATTATTCTCCCAGAGGACACCGGAGAAGGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATCATCATTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CCA 90 bp | GAGGCGTTGATCTGTGGAGAAAGCTTCAGGAATCTTTCGACCTTCTaGATCTCAGGGAAAGGGTCTCTGATGAGGCGGTCGCCATCCACA | + |
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Preference number: 5 (lower is better) Translates to: EALICGESFRNLSTF*ISGKGSLMRRSPST Trigger: TGTGGATGGCGACCGCCTCATCAGAGACCCTTTCCCTGAGATCCAGAAGGTCGAAAGATTCCTGAAGCTTTCTCCACAGATCAACGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS-3UTR CAA 90 bp | AGATGTACACCAGAAGTTAACAACAGGAAAAGTCCCGAGCCTAGGAGACGGCAAGCTCGGGTACCACCCTaGCGCACCCCAATGATGATG | + |
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Preference number: 5 (lower is better) Translates to: RCTPEVNNRKSPEPRRRQARVPP*RTPMMM Trigger: CATCATCATTGGGGTGCGCAAGGGTGGTACCCGAGC...TTGCCGTCTCCTAGGCTCGGGACTTTTCCTGTTGTTAACTTCTGGTGTACATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CCA 90 bp | TCTTATTTGGCTCATGAAAGTATTCGTGCAGTTTATCAAGTAGTTTaGGATCCACCTGGGGGTGCGCCCGGCCTTTGGACTCGTGTAAGC | + |
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Preference number: 5 (lower is better) Translates to: SYLAHESIRAVYQVV*DPPGGAPGLWTRVS Trigger: GCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACTTGATAAACTGCACGAATACTTTCATGAGCCAAATAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CCA 72 bp | GTAGTTTGGGATCCACCTGGGGGTGCGCCCGGCCTTTaGACTCGTGTAAGCAGCGGTCCTTGCCACTGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VVWDPPGGAPGL*TRVSSGPCHCP Trigger: GGGACAGTGGCAAGGACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CAA 72 bp | AGTAGTTTGGGATCCACCTGGGGGTGCGCCCGGCCTTaGGACTCGTGTAAGCAGCGGTCCTTGCCACTGTCC | + |
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Preference number: 6 (lower is better) Translates to: SSLGSTWGCARP*DSCKQRSLPLS Trigger: GGACAGTGGCAAGGACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS GCA 72 bp | TCCTCTGGGAGAATAATCACCTTCCTCAGAAGCTCCTaGTGTTTGAGCCCCGGGCCAGGAGCAGCCGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: SSGRIITFLRSS*CLSPGPGAAGW Trigger: CCACCCGGCTGCTCCTGGCCCGGGGCTCAAACAGCAGGAGCTTCTGAGGAAGGTGATTATTCTCCCAGAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CAA 72 bp | GGGAGAATAATCACCTTCCTCAGAAGCTCCTGCTGTTaGAGCCCCGGGCCAGGAGCAGCCGGGTGGGAATGC | + |
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Preference number: 6 (lower is better) Translates to: GRIITFLRSSCC*SPGPGAAGWEC Trigger: GCATTCCCACCCGGCTGCTCCTGGCCCGGGGCTCAAACAGCAGGAGCTTCTGAGGAAGGTGATTATTCTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CAA 90 bp | GTGTCCTCTGGGAGAATAATCACCTTCCTCAGAAGCTCCTGCTGTTaGAGCCCCGGGCCAGGAGCAGCCGGGTGGGAATGCACAAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: VSSGRIITFLRSSCC*SPGPGAAGWECTSW Trigger: CCAGCTTGTGCATTCCCACCCGGCTGCTCCTGGCCCGGGGCTCAAACAGCAGGAGCTTCTGAGGAAGGTGATTATTCTCCCAGAGGACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CAA 90 bp | AGTTTATCAAGTAGTTTGGGATCCACCTGGGGGTGCGCCCGGCCTTaGGACTCGTGTAAGCAGCGGTCCTTGCCACTGTCCCGCAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: SLSSSLGSTWGCARP*DSCKQRSLPLSRRQ Trigger: CTGCCTGCGGGACAGTGGCAAGGACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACTTGATAAACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS TCA 72 bp | GTACAACACCTGGGTGTAGTCGGACAGCACGCGCTCTaGTGGGTCCCTCAGGATAAGCAGCAGGCGGATGGT | + |
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Preference number: 6 (lower is better) Translates to: VQHLGVVGQHAL*WVPQDKQQADG Trigger: ACCATCCGCCTGCTGCTTATCCTGAGGGACCCATCAGAGCGCGTGCTGTCCGACTACACCCAGGTGTTGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 |
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| CDS TCA 72 bp | GCCAGTTCAGCATGTGTGCATGGTACAGGCTGCGGTTaGGAGCCTTGTAGTCCAGGTTCAGCCGACCGTCCC | + |
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Preference number: 6 (lower is better) Translates to: ASSACVHGTGCG*EPCSPGSADRP Trigger: GGGACGGTCGGCTGAACCTGGACTACAAGGCTCTCAACCGCAGCCTGTACCATGCACACATGCTGAACTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS TCA 72 bp | CCTCGTTTTCAGCTGCAGCAACATCAGGATGCAGGCTaGGCATCTCTAGCAGGGCTCGGGTACCACCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: PRFQLQQHQDAG*ASLAGLGYHPC Trigger: GCAAGGGTGGTACCCGAGCCCTGCTAGAGATGCTCAGCCTGCATCCTGATGTTGCTGCAGCTGAAAACGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 |
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| CDS GCA 72 bp | CCCTTGCGCACCCCAATGATGATGGTCTGTGGCAGCTaGTGTGTGGAACCATTGGATGCTGTGCCTTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: PLRTPMMMVCGS*CVEPLDAVPSP Trigger: CGGAGAAGGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATCATCATTGGGGTGCGCAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS GCA 72 bp | TGCAGTTTATCAAGTAGTTTGGGATCCACCTGGGGGTaGGCCCGGCCTTTGGACTCGTGTAAGCAGCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: CSLSSSLGSTWG*ARPLDSCKQRS Trigger: GGACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACTTGATAAACTGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CCA 72 bp | GGTACCACCCTTGCGCACCCCAATGATGATGGTCTGTaGCAGCTGCTGTGTGGAACCATTGGATGCTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: GTTLAHPNDDGL*QLLCGTIGCCA Trigger: GGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATCATCATTGGGGTGCGCAAGGGTGGTACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CCA 72 bp | GGTTCAGCCGACCGTCCCGCATTAGGAGGTCCTCAATaGGTGGATAGGGCTTGTGCTTCTGAAGGTGGTTGT | + |
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Preference number: 6 (lower is better) Translates to: GSADRPALGGPQ*VDRACASEGGC Trigger: ACAACCACCTTCAGAAGCACAAGCCCTATCCACCCATTGAGGACCTCCTAATGCGGGACGGTCGGCTGAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CAA 90 bp | CGCACCCCAATGATGATGGTCTGTGGCAGCTGCTGTGTGGAACCATaGGATGCTGTGCCTTCTCCGGTGTCCTCTGGGAGAATAATCACC | + |
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Preference number: 6 (lower is better) Translates to: RTPMMMVCGSCCVEP*DAVPSPVSSGRIIT Trigger: GGTGATTATTCTCCCAGAGGACACCGGAGAAGGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATCATCATTGGGGTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CAA 72 bp | ATGATGATGGTCTGTGGCAGCTGCTGTGTGGAACCATaGGATGCTGTGCCTTCTCCGGTGTCCTCTGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: MMMVCGSCCVEP*DAVPSPVSSGR Trigger: TCTCCCAGAGGACACCGGAGAAGGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATCATCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS GCA 72 bp | GATGGTCTGTGGCAGCTGCTGTGTGGAACCATTGGATaGTGTGCCTTCTCCGGTGTCCTCTGGGAGAATAAT | + |
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Preference number: 6 (lower is better) Translates to: DGLWQLLCGTIG*CAFSGVLWENN Trigger: ATTATTCTCCCAGAGGACACCGGAGAAGGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CCA 72 bp | GGAACCATTGGATGCTGTGCCTTCTCCGGTGTCCTCTaGGAGAATAATCACCTTCCTCAGAAGCTCCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: GTIGCCAFSGVL*ENNHLPQKLLL Trigger: CAGCAGGAGCTTCTGAGGAAGGTGATTATTCTCCCAGAGGACACCGGAGAAGGCACAGCATCCAATGGTTCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 ENSMUST00000137142.2 ENSMUST00000152057.2 |
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| CDS CCA 72 bp | TATTCGTGCAGTTTATCAAGTAGTTTGGGATCCACCTaGGGGTGCGCCCGGCCTTTGGACTCGTGTAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: YSCSLSSSLGST*GCARPLDSCKQ Trigger: CTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACTTGATAAACTGCACGAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CCA 72 bp | GCTCATGAAAGTATTCGTGCAGTTTATCAAGTAGTTTaGGATCCACCTGGGGGTGCGCCCGGCCTTTGGACT | + |
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Preference number: 6 (lower is better) Translates to: AHESIRAVYQVV*DPPGGAPGLWT Trigger: AGTCCAAAGGCCGGGCGCACCCCCAGGTGGATCCCAAACTACTTGATAAACTGCACGAATACTTTCATGAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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| CDS CCA 72 bp | GGTTTTGTTAAAGTAGAAGTTCGAGGCGTTGATCTGTaGAGAAAGCTTCAGGAATCTTTCGACCTTCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: GFVKVEVRGVDL*RKLQESFDLLD Trigger: ATCCAGAAGGTCGAAAGATTCCTGAAGCTTTCTCCACAGATCAACGCCTCGAACTTCTACTTTAACAAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053116.7 ENSMUST00000117944.2 |
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