Pregenerated sensors for HRH4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037346Ensembl transcript IDs: ENSMUST00000041676.3, ENSMUST00000234084.2, ENSMUST00000234565.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGCGCTCAGAAGGATGGCCAGTGACCTGGCTAGCTTCCTGCCTCTaGGAAGCTCTGCGTACTCCCTTTGGCGAAGCGCTGCACTTTCCG | + |
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Preference number: 1 (lower is better) Translates to: KRSEGWPVTWLASCL*EALRTPFGEALHFP Trigger: CGGAAAGTGCAGCGCTTCGCCAAAGGGAGTACGCAGAGCTTCTCAGAGGCAGGAAGCTAGCCAGGTCACTGGCCATCCTTCTGAGCGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR CCA 90 bp | GACCTGGCTAGCTTCCTGCCTCTGAGAAGCTCTGCGTACTCCCTTTaGCGAAGCGCTGCACTTTCCGATCGCCAGAAGGAACCCACTTTG | + |
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Preference number: 1 (lower is better) Translates to: DLASFLPLRSSAYSL*RSAALSDRQKEPTL Trigger: CAAAGTGGGTTCCTTCTGGCGATCGGAAAGTGCAGCGCTTCGCCAAAGGGAGTACGCAGAGCTTCTCAGAGGCAGGAAGCTAGCCAGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR GCA 90 bp | CTTCCTGCCTCTGAGAAGCTCTGCGTACTCCCTTTGGCGAAGCGCTaGACTTTCCGATCGCCAGAAGGAACCCACTTTGAAGGCAGTGAT | + |
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Preference number: 1 (lower is better) Translates to: LPASEKLCVLPLAKR*TFRSPEGTHFEGSD Trigger: ATCACTGCCTTCAAAGTGGGTTCCTTCTGGCGATCGGAAAGTGCAGCGCTTCGCCAAAGGGAGTACGCAGAGCTTCTCAGAGGCAGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR CCA 90 bp | TGTAAGTGTCCTGAAGCACTGGAAGAGGTAGTGGAGAATCCAGCATaGCTAGGGCACCTACTGAGAGCCCTACGCTTCCACAGGCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: CKCPEALEEVVENPA*LGHLLRALRFHRLQ Trigger: CTGGAGCCTGTGGAAGCGTAGGGCTCTCAGTAGGTGCCCTAGCCATGCTGGATTCTCCACTACCTCTTCCAGTGCTTCAGGACACTTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR TCA 90 bp | CGCCAGAAGGAACCCACTTTGAAGGCAGTGATACTGCTGTTCATGTaGGTCCTTAAGGACACCAGGATGCTGCTCTTTCTTCGAGGACTT | + |
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Preference number: 1 (lower is better) Translates to: RQKEPTLKAVILLFM*VLKDTRMLLFLRGL Trigger: AAGTCCTCGAAGAAAGAGCAGCATCCTGGTGTCCTTAAGGACTCACATGAACAGCAGTATCACTGCCTTCAAAGTGGGTTCCTTCTGGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR TCA 90 bp | AATGCTGTACCACACCGATTTGGGGCGTTCCGTTCTGGGGTAAGTTaGAAGGACAATTGTGAACAGACAGTATGGAGCCCAGCAAATGGC | + |
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Preference number: 1 (lower is better) Translates to: NAVPHRFGAFRSGVS*KDNCEQTVWSPANG Trigger: GCCATTTGCTGGGCTCCATACTGTCTGTTCACAATTGTCCTTTCAACTTACCCCAGAACGGAACGCCCCAAATCGGTGTGGTACAGCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR TCA 90 bp | GCCAGGCTCACAGTCCTTTGTGTTCGTGCTGTTCTTCCAAGAATCTaGAGCCAGAATCATCGGGCCATTTACCAAGAAAGCCAGTATCCA | + |
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Preference number: 1 (lower is better) Translates to: ARLTVLCVRAVLPRI*SQNHRAIYQESQYP Trigger: TGGATACTGGCTTTCTTGGTAAATGGCCCGATGATTCTGGCTTCAGATTCTTGGAAGAACAGCACGAACACAAAGGACTGTGAGCCTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR GCA 90 bp | AATTCTCCTCAAGAAGATACTGACTGGTTCTGTGACAGCGCTGGTTaGTTTGTCACACAAAGTATCTTCCAGAAAGCCTTCTGGAAACGC | + |
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Preference number: 1 (lower is better) Translates to: NSPQEDTDWFCDSAG*FVTQSIFQKAFWKR Trigger: GCGTTTCCAGAAGGCTTTCTGGAAGATACTTTGTGTGACAAAGCAACCAGCGCTGTCACAGAACCAGTCAGTATCTTCTTGAGGAGAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR TCA 90 bp | TTTGTCACACAAAGTATCTTCCAGAAAGCCTTCTGGAAACGCCTGTaGCACAAAGGGTACAGAAAGGGATTAACAAACGAATTGAACCAT | + |
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Preference number: 1 (lower is better) Translates to: FVTQSIFQKAFWKRL*HKGYRKGLTNELNH Trigger: ATGGTTCAATTCGTTTGTTAATCCCTTTCTGTACCCTTTGTGTCACAGGCGTTTCCAGAAGGCTTTCTGGAAGATACTTTGTGTGACAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR CAA 90 bp | GTGACACAAAGGGTACAGAAAGGGATTAACAAACGAATTGAACCATaGCAGCCAGAAGGCAATGCTGTACCACACCGATTTGGGGCGTTC | + |
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Preference number: 2 (lower is better) Translates to: VTQRVQKGINKRIEP*QPEGNAVPHRFGAF Trigger: GAACGCCCCAAATCGGTGTGGTACAGCATTGCCTTCTGGCTGCAATGGTTCAATTCGTTTGTTAATCCCTTTCTGTACCCTTTGTGTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR CAA 90 bp | CTCCTCAAGAAGATACTGACTGGTTCTGTGACAGCGCTGGTTGCTTaGTCACACAAAGTATCTTCCAGAAAGCCTTCTGGAAACGCCTGT | + |
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Preference number: 2 (lower is better) Translates to: LLKKILTGSVTALVA*SHKVSSRKPSGNAC Trigger: ACAGGCGTTTCCAGAAGGCTTTCTGGAAGATACTTTGTGTGACAAAGCAACCAGCGCTGTCACAGAACCAGTCAGTATCTTCTTGAGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR TCA 90 bp | GAAAGGACAATTGTGAACAGACAGTATGGAGCCCAGCAAATGGCAAAAGCGCTCGTGACGAGATGCAGCTaGTTCCTTCAATCCAGGATT | + |
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Preference number: 2 (lower is better) Translates to: ERTIVNRQYGAQQMAKALVTRCS*FLQSRI Trigger: AATCCTGGATTGAAGGAATCAGCTGCATCTCGTCAC...GAGCGCTTTTGCCATTTGCTGGGCTCCATACTGTCTGTTCACAATTGTCCTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR TCA 90 bp | TGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTGAAGCAAATAAGCCACAGAGATaGCAGGAAGCAGGAATTCCA | + |
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Preference number: 2 (lower is better) Translates to: WKLRSIQRTETKVGTREANKPQR*QEAGIP Trigger: TGGAATTCCTGCTTCCTGTCATCTCTGTGGCTTATT...TGCTTCACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR GCA 90 bp | TGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTGAAGCAAACGAATTGAACCATTaGAGCCAGAAGGCAATGCTG | + |
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Preference number: 2 (lower is better) Translates to: WKLRSIQRTETKVGTREANELNH*SQKAML Trigger: CAGCATTGCCTTCTGGCTGCAATGGTTCAATTCGTT...TGCTTCACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCAAGAGCATTGTAATGGTGAGGATGTACCACTCTGTAACAAAGCCAGGCTCGTGGATAGAGCAACATaGAAGCTCAGATCCATTCAG | + |
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Preference number: 2 (lower is better) Translates to: FQEHCNGEDVPLCNKARLVDRAT*KLRSIQ Trigger: CTGAATGGATCTGAGCTTCCATGTTGCTCTATCCAC...GAGCCTGGCTTTGTTACAGAGTGGTACATCCTCACCATTACAATGCTCTTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR TCA 90 bp | TGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTGAAGCACAAACAGCCACCATTTaGGCAACAATCTTCATGATG | + |
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Preference number: 2 (lower is better) Translates to: WKLRSIQRTETKVGTREAQTATI*ATIFMM Trigger: CATCATGAAGATTGTTGCTCAAATGGTGGCTGTTTG...TGCTTCACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR TCA 90 bp | AGACAGAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTCTTCCAAGAATCTaGAGCCAGAATCATCGGGCC | + |
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Preference number: 2 (lower is better) Translates to: RQRALRKILVFLQLSVCHVLPRI*SQNHRA Trigger: GGCCCGATGATTCTGGCTTCAGATTCTTGGAAGAAC...ATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTCTGTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR CCA 90 bp | GAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTTCCACTGTTTGCTTGAGTaGATAGAGCAACATGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: ESPEENISIFAALSLSCFHCLLE*IEQHGS Trigger: GCTTCCATGTTGCTCTATCCACTCAAGCAAACAGTG...GAAACATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| 3UTR-3UTR TCA 90 bp | ATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTTCCTAAACTACTGTGGACTCTGTACACTGTTTGCTTaGGTGGATAGAGCAACATGG | + |
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Preference number: 2 (lower is better) Translates to: ISIFAALSLSCFLNYCGLCTLFA*VDRATW Trigger: CCATGTTGCTCTATCCACTCAAGCAAACAGTGTACA...GAGTCCACAGTAGTTTAGGAAACATGACAGACTGAGAGCTGCAAAAATACTAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| 3UTR TCA 72 bp | GAAGGATGGCCAGTGACCTGGCTAGCTTCCTGCCTCTaGGAAGCTCTGCGTACTCCCTTTGGCGAAGCGCTG | + |
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Preference number: 3 (lower is better) Translates to: EGWPVTWLASCL*EALRTPFGEAL Trigger: CAGCGCTTCGCCAAAGGGAGTACGCAGAGCTTCTCAGAGGCAGGAAGCTAGCCAGGTCACTGGCCATCCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR CAA 90 bp | CTGGCTAGCTTCCTGCCTCTGAGAAGCTCTGCGTACTCCCTTTGGCGAAGCGCTTCAATCCAGGATTACTaGTCCTGCAAGCCACCCCAG | + |
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Preference number: 3 (lower is better) Translates to: LASFLPLRSSAYSLWRSASIQDY*SCKPPQ Trigger: CTGGGGTGGCTTGCAGGACAAGTAATCCTGGATTGA...AGCGCTTCGCCAAAGGGAGTACGCAGAGCTTCTCAGAGGCAGGAAGCTAGCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR GCA 72 bp | TCTGAGAAGCTCTGCGTACTCCCTTTGGCGAAGCGCTaGACTTTCCGATCGCCAGAAGGAACCCACTTTGAA | + |
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Preference number: 3 (lower is better) Translates to: SEKLCVLPLAKR*TFRSPEGTHFE Trigger: TTCAAAGTGGGTTCCTTCTGGCGATCGGAAAGTGCAGCGCTTCGCCAAAGGGAGTACGCAGAGCTTCTCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR TCA 72 bp | CCACACCGATTTGGGGCGTTCCGTTCTGGGGTAAGTTaGAAGGACAATTGTGAACAGACAGTATGGAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: PHRFGAFRSGVS*KDNCEQTVWSP Trigger: TGGGCTCCATACTGTCTGTTCACAATTGTCCTTTCAACTTACCCCAGAACGGAACGCCCCAAATCGGTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR CCA 72 bp | ATTGCAGCCAGAAGGCAATGCTGTACCACACCGATTTaGGGCGTTCCGTTCTGGGGTAAGTTGAAAGGACAA | + |
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Preference number: 3 (lower is better) Translates to: IAARRQCCTTPI*GVPFWGKLKGQ Trigger: TTGTCCTTTCAACTTACCCCAGAACGGAACGCCCCAAATCGGTGTGGTACAGCATTGCCTTCTGGCTGCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR GCA 72 bp | ATGCAGCTGATTCCTTCAATCCAGGATTACTTGTCCTaGAAGCCACCCCAGCTCTGTGTAAGTGTCCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: MQLIPSIQDYLS*KPPQLCVSVLK Trigger: CTTCAGGACACTTACACAGAGCTGGGGTGGCTTGCAGGACAAGTAATCCTGGATTGAAGGAATCAGCTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR CCA 72 bp | TGCAGCTCTCAGTCTGTCATGTTTCCTAAACTACTGTaGACTCATGTTCCACTGACTTGCATGTGGAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: CSSQSVMFPKLL*THVPLTCMWRG Trigger: ACCCCTCCACATGCAAGTCAGTGGAACATGAGTCCACAGTAGTTTAGGAAACATGACAGACTGAGAGCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| 3UTR-3UTR CAA 90 bp | ATTAACAAACGAATTGAACCATTGCAGCCAGAAGGCAATGCTGTACCACACCGACAGGCTCACAGTCCTTaGTGTTCGTGCTGTTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: INKRIEPLQPEGNAVPHRQAHSP*CSCCSS Trigger: GGAAGAACAGCACGAACACAAAGGACTGTGAGCCTG...TCGGTGTGGTACAGCATTGCCTTCTGGCTGCAATGGTTCAATTCGTTTGTTAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR CAA 90 bp | TGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTGAAGCATCATGTTCCACTGACTaGCATGTGGAGGGGTTTTAT | + |
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Preference number: 3 (lower is better) Translates to: WKLRSIQRTETKVGTREASCSTD*HVEGFY Trigger: ATAAAACCCCTCCACATGCAAGTCAGTGGAACATGA...TGCTTCACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| 3UTR TCA 72 bp | CAAAGTATCTTCCAGAAAGCCTTCTGGAAACGCCTGTaGCACAAAGGGTACAGAAAGGGATTAACAAACGAA | + |
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Preference number: 3 (lower is better) Translates to: QSIFQKAFWKRL*HKGYRKGLTNE Trigger: TTCGTTTGTTAATCCCTTTCTGTACCCTTTGTGTCACAGGCGTTTCCAGAAGGCTTTCTGGAAGATACTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR-3UTR CAA 90 bp | AGACAGAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATTCATGTTCCACTGACTaGCATGTGGAGGGGTTTTAT | + |
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Preference number: 3 (lower is better) Translates to: RQRALRKILVFLQLSVCHSCSTD*HVEGFY Trigger: ATAAAACCCCTCCACATGCAAGTCAGTGGAACATGA...ATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTCTGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| 3UTR CCA 72 bp | TTTCAGACATTACATTTTGTACACTGTTTGCTTGAGTaGATAGAGCAACATGGAAGCTCAGATCCATTCAGA | + |
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Preference number: 3 (lower is better) Translates to: FQTLHFVHCLLE*IEQHGSSDPFR Trigger: TCTGAATGGATCTGAGCTTCCATGTTGCTCTATCCACTCAAGCAAACAGTGTACAAAATGTAATGTCTGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| 3UTR TCA 72 bp | AAGTTTTCAGACATTACATTTTGTACACTGTTTGCTTaGGTGGATAGAGCAACATGGAAGCTCAGATCCATT | + |
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Preference number: 3 (lower is better) Translates to: KFSDITFCTLFA*VDRATWKLRSI Trigger: AATGGATCTGAGCTTCCATGTTGCTCTATCCACTCAAGCAAACAGTGTACAAAATGTAATGTCTGAAAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| CDS-3UTR CCA 90 bp | GAAAGGACAATTGTGAACAGACAGTATGGAGCCCAGCAAATGGCAAAAGCGCTCGGGGACCTGAGCAGCTaGTGGCAAGATGCCAGTACT | + |
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Preference number: 4 (lower is better) Translates to: ERTIVNRQYGAQQMAKALGDLSS*WQDAST Trigger: AGTACTGGCATCTTGCCACCAGCTGCTCAGGTCCCC...GAGCGCTTTTGCCATTTGCTGGGCTCCATACTGTCTGTTCACAATTGTCCTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| CDS-3UTR TCA 90 bp | GCAACATGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTAATGCCAAGGGGACCTaGGCAGCTGGTGGCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: ATWKLRSIQRTETKVGTRNAKGT*AAGGKM Trigger: CATCTTGCCACCAGCTGCTCAGGTCCCCTTGGCATT...ACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCATGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| CDS-3UTR TCA 90 bp | CATTTGAGCAACAATCTTCATGATGCCAGTGTGTTGAGCCCTATAAGACACCGCAATGCCAAGGGGACCTaGGCAGCTGGTGGCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: HLSNNLHDASVLSPIRHRNAKGT*AAGGKM Trigger: CATCTTGCCACCAGCTGCTCAGGTCCCCTTGGCATT...GCGGTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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| CDS-3UTR CCA 90 bp | GCAACATGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTGGGGACCTGAGCAGCTaGTGGCAAGATGCCAGTACT | + |
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Preference number: 4 (lower is better) Translates to: ATWKLRSIQRTETKVGTRGDLSS*WQDAST Trigger: AGTACTGGCATCTTGCCACCAGCTGCTCAGGTCCCC...ACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCATGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| 3UTR CAA 72 bp | GACGAGATGCAGCTGATTCCTTCAATCCAGGATTACTaGTCCTGCAAGCCACCCCAGCTCTGTGTAAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: DEMQLIPSIQDY*SCKPPQLCVSV Trigger: GACACTTACACAGAGCTGGGGTGGCTTGCAGGACAAGTAATCCTGGATTGAAGGAATCAGCTGCATCTCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| CDS-3UTR CCA 90 bp | CACCATTTGAGCAACAATCTTCATGATGCCAGTGTGTTGAGCCCTATAAGACACGGGGACCTGAGCAGCTaGTGGCAAGATGCCAGTACT | + |
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Preference number: 4 (lower is better) Translates to: HHLSNNLHDASVLSPIRHGDLSS*WQDAST Trigger: AGTACTGGCATCTTGCCACCAGCTGCTCAGGTCCCC...GTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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| CDS-3UTR CCA 90 bp | TGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTGAAGCAAAGCGCTCAGAAGGATaGCCAGTGACCTGGCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: WKLRSIQRTETKVGTREAKRSEG*PVTWLA Trigger: AGCTAGCCAGGTCACTGGCCATCCTTCTGAGCGCTT...TGCTTCACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR TCA 90 bp | TGGATAGAGCAACATGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGAATGCCAAGGGGACCTaGGCAGCTGGTGGCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: WIEQHGSSDPFRGQKLKLNAKGT*AAGGKM Trigger: CATCTTGCCACCAGCTGCTCAGGTCCCCTTGGCATT...CAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCATGTTGCTCTATCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| CDS-3UTR TCA 90 bp | GAAATCAGGCATAGCACAATAAATGTTGTATCAGGAAAGAGACAGAGAGCCCTGCTAGCTTCCTGCCTCTaGGAAGCTCTGCGTACTCCC | + |
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Preference number: 4 (lower is better) Translates to: EIRHSTINVVSGKRQRALLASCL*EALRTP Trigger: GGGAGTACGCAGAGCTTCTCAGAGGCAGGAAGCTAG...CAGGGCTCTCTGTCTCTTTCCTGATACAACATTTATTGTGCTATGCCTGATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| 3UTR CAA 72 bp | CACCATTTGAGCAACAATCTTCATGATGCCAGTGTGTaGAGCCCTATAAGACACCGCAGTTCTCCATCTGCA | + |
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Preference number: 4 (lower is better) Translates to: HHLSNNLHDASV*SPIRHRSSPSA Trigger: TGCAGATGGAGAACTGCGGTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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| CDS-3UTR TCA 90 bp | CATTTGAGCAACAATCTTCATGATGCCAGTGTGTTGAGCCCTATAAGACACCGCCAGTATTCTCTTCAGTaGAACACACGTCAGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: HLSNNLHDASVLSPIRHRQYSLQ*NTRQCE Trigger: CTCACACTGACGTGTGTTTCACTGAAGAGAATACTG...GCGGTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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| CDS-3UTR CCA 90 bp | CATTTGAGCAACAATCTTCATGATGCCAGTGTGTTGAGCCCTATAAGACACCGCGGATGTACAGAGGAATaGAAATCAAACCCACGAGGA | + |
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Preference number: 4 (lower is better) Translates to: HLSNNLHDASVLSPIRHRGCTEE*KSNPRG Trigger: TCCTCGTGGGTTTGATTTCCATTCCTCTGTACATCC...GCGGTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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| CDS-3UTR CCA 90 bp | TGGATAGAGCAACATGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGATGGAGCCCAGCAAATaGCAAAAGCGCTCAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: WIEQHGSSDPFRGQKLKLMEPSK*QKRSEG Trigger: TCCTTCTGAGCGCTTTTGCCATTTGCTGGGCTCCAT...CAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCATGTTGCTCTATCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| 3UTR CAA 72 bp | AAGATACTGACTGGTTCTGTGACAGCGCTGGTTGCTTaGTCACACAAAGTATCTTCCAGAAAGCCTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: KILTGSVTALVA*SHKVSSRKPSG Trigger: TCCAGAAGGCTTTCTGGAAGATACTTTGTGTGACAAAGCAACCAGCGCTGTCACAGAACCAGTCAGTATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| CDS-3UTR TCA 90 bp | CAGAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTGTTCTTCCAAGAATCTaGAGCCAGAATCATCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: QRALRKILVFLQLSVCHVVLPRI*SQNHRA Trigger: GGCCCGATGATTCTGGCTTCAGATTCTTGGAAGAAC...AACATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR GCA 90 bp | TGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTGAAGCAAGTCCTTTGTGTTCGTaGTGTTCTTCCAAGAATCTG | + |
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Preference number: 4 (lower is better) Translates to: WKLRSIQRTETKVGTREASPLCS*CSSKNL Trigger: CAGATTCTTGGAAGAACAGCACGAACACAAAGGACT...TGCTTCACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR GCA 90 bp | AAAGAAATCAGGCATAGCACAATAAATGTTGTATCAGGAAAGAGACAGAGAGCCCAGGATTACTTGTCCTaGAAGCCACCCCAGCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: KEIRHSTINVVSGKRQRAQDYLS*KPPQLC Trigger: ACAGAGCTGGGGTGGCTTGCAGGACAAGTAATCCTG...GGCTCTCTGTCTCTTTCCTGATACAACATTTATTGTGCTATGCCTGATTTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| 3UTR CAA 72 bp | AGGGTACAGAAAGGGATTAACAAACGAATTGAACCATaGCAGCCAGAAGGCAATGCTGTACCACACCGATTT | + |
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Preference number: 4 (lower is better) Translates to: RVQKGINKRIEP*QPEGNAVPHRF Trigger: AAATCGGTGTGGTACAGCATTGCCTTCTGGCTGCAATGGTTCAATTCGTTTGTTAATCCCTTTCTGTACCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| 3UTR CAA 72 bp | GGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTaGGCACTCGTGAAGCAATTCTCCTCAAGAAGATAC | + |
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Preference number: 4 (lower is better) Translates to: GSSDPFRGQKLK*ALVKQFSSRRY Trigger: GTATCTTCTTGAGGAGAATTGCTTCACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234084.2 |
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| CDS-3UTR TCA 90 bp | TCTGTCATGTTTCCTAAACTACTGTGGACTCATGTTCCACTGACTTGCATGTGGCAAACAGCCACCATTTaGGCAACAATCTTCATGATG | + |
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Preference number: 4 (lower is better) Translates to: SVMFPKLLWTHVPLTCMWQTATI*ATIFMM Trigger: CATCATGAAGATTGTTGCTCAAATGGTGGCTGTTTG...CCACATGCAAGTCAGTGGAACATGAGTCCACAGTAGTTTAGGAAACATGACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR TCA 90 bp | GAAATCAGGCATAGCACAATAAATGTTGTATCAGGAAAGAGACAGAGAGCCCTGAATAAGCCACAGAGATaGCAGGAAGCAGGAATTCCA | + |
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Preference number: 4 (lower is better) Translates to: EIRHSTINVVSGKRQRALNKPQR*QEAGIP Trigger: TGGAATTCCTGCTTCCTGTCATCTCTGTGGCTTATT...CAGGGCTCTCTGTCTCTTTCCTGATACAACATTTATTGTGCTATGCCTGATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR TCA 90 bp | GAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTTCGTGACGAGATGCAGCTaGTTCCTTCAATCCAGGATT | + |
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Preference number: 4 (lower is better) Translates to: ESPEENISIFAALSLSCFVTRCS*FLQSRI Trigger: AATCCTGGATTGAAGGAATCAGCTGCATCTCGTCAC...GAAACATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR GCA 90 bp | AGACAGAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATAGGACACCAGGATGCTaGTCTTTCTTCGAGGACTTT | + |
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Preference number: 4 (lower is better) Translates to: RQRALRKILVFLQLSVCHRTPGC*SFFEDF Trigger: AAAGTCCTCGAAGAAAGAGCAGCATCCTGGTGTCCT...ATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTCTGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR TCA 90 bp | TTACATTTTGTACACTGTTTGCTTGAGTGGATAGAGCAACATGGAAGCTCAGATTTCTGGAAACGCCTGTaGCACAAAGGGTACAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: LHFVHCLLEWIEQHGSSDFWKRL*HKGYRK Trigger: CTTTCTGTACCCTTTGTGTCACAGGCGTTTCCAGAA...ATCTGAGCTTCCATGTTGCTCTATCCACTCAAGCAAACAGTGTACAAAATGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR GCA 90 bp | CATTTGAGCAACAATCTTCATGATGCCAGTGTGTTGAGCCCTATAAGACACCGCAATATTGTAGACAGATaGGGTGCACAAAAGATAGTC | + |
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Preference number: 4 (lower is better) Translates to: HLSNNLHDASVLSPIRHRNIVDR*GAQKIV Trigger: GACTATCTTTTGTGCACCGCATCTGTCTACAATATT...GCGGTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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| CDS-3UTR GCA 90 bp | AAAGAAATCAGGCATAGCACAATAAATGTTGTATCAGGAAAGAGACAGAGAGCCAACGAATTGAACCATTaGAGCCAGAAGGCAATGCTG | + |
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Preference number: 4 (lower is better) Translates to: KEIRHSTINVVSGKRQRANELNH*SQKAML Trigger: CAGCATTGCCTTCTGGCTGCAATGGTTCAATTCGTT...GGCTCTCTGTCTCTTTCCTGATACAACATTTATTGTGCTATGCCTGATTTCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CCA 90 bp | AGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTTCCTAGGATGTACAGAGGAATaGAAATCAAACCCACGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SPEENISIFAALSLSCFLGCTEE*KSNPRG Trigger: TCCTCGTGGGTTTGATTTCCATTCCTCTGTACATCC...TAGGAAACATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR GCA 90 bp | CAGACATTACATTTTGTACACTGTTTGCTTGAGTGGATAGAGCAACATGGAAGCAATATTGTAGACAGATaGGGTGCACAAAAGATAGTC | + |
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Preference number: 4 (lower is better) Translates to: QTLHFVHCLLEWIEQHGSNIVDR*GAQKIV Trigger: GACTATCTTTTGTGCACCGCATCTGTCTACAATATT...GCTTCCATGTTGCTCTATCCACTCAAGCAAACAGTGTACAAAATGTAATGTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CAA 90 bp | TGGATAGAGCAACATGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGCATGATGCCAGTGTGTaGAGCCCTATAAGACACAGC | + |
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Preference number: 5 (lower is better) Translates to: WIEQHGSSDPFRGQKLKLHDASV*SPIRHS Trigger: GCTGTGTCTTATAGGGCTCAACACACTGGCATCATG...CAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCATGTTGCTCTATCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CAA 90 bp | CAGACATTACATTTTGTACACTGTTTGCTTGAGTGGATAGAGCAACATGGAAGCCAGGCTCACAGTCCTTaGTGTTCGTGCTGTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: QTLHFVHCLLEWIEQHGSQAHSP*CSCCSS Trigger: GGAAGAACAGCACGAACACAAAGGACTGTGAGCCTG...GCTTCCATGTTGCTCTATCCACTCAAGCAAACAGTGTACAAAATGTAATGTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CAA 90 bp | AGACAGAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATTCAATCCAGGATTACTaGTCCTGCAAGCCACCCCAG | + |
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Preference number: 5 (lower is better) Translates to: RQRALRKILVFLQLSVCHSIQDY*SCKPPQ Trigger: CTGGGGTGGCTTGCAGGACAAGTAATCCTGGATTGA...ATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTCTGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CAA 90 bp | GCAACATGGAAGCTCAGATCCATTCAGAGGACAGAAACTAAAGTTGGCACTCGTAAGATGACCACAGCATaGCCTACCATTATAGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: ATWKLRSIQRTETKVGTRKMTTA*PTIIAK Trigger: CTTTGCTATAATGGTAGGCAATGCTGTGGTCATCTT...ACGAGTGCCAACTTTAGTTTCTGTCCTCTGAATGGATCTGAGCTTCCATGTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| CDS-3UTR CAA 90 bp | CATTTGAGCAACAATCTTCATGATGCCAGTGTGTTGAGCCCTATAAGACACCGCAAGATGACCACAGCATaGCCTACCATTATAGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: HLSNNLHDASVLSPIRHRKMTTA*PTIIAK Trigger: CTTTGCTATAATGGTAGGCAATGCTGTGGTCATCTT...GCGGTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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| CDS-3UTR CAA 90 bp | CAGAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTCAGAAGGAACCCACTTaGAAGGCAGTGATACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: QRALRKILVFLQLSVCHVQKEPT*KAVILL Trigger: CAGCAGTATCACTGCCTTCAAAGTGGGTTCCTTCTG...AACATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CAA 90 bp | ATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTTCCTAAACTACTGTGGACTCACAGCGCTGGTTGCTTaGTCACACAAAGTATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: ISIFAALSLSCFLNYCGLTALVA*SHKVSS Trigger: GGAAGATACTTTGTGTGACAAAGCAACCAGCGCTGT...GAGTCCACAGTAGTTTAGGAAACATGACAGACTGAGAGCTGCAAAAATACTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CAA 90 bp | CAGAGAGCCCTGAGGAAAATATTAGTATTTTTGCAGCTCTCAGTCTGTCATGTTAAGATGACCACAGCATaGCCTACCATTATAGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: QRALRKILVFLQLSVCHVKMTTA*PTIIAK Trigger: CTTTGCTATAATGGTAGGCAATGCTGTGGTCATCTT...AACATGACAGACTGAGAGCTGCAAAAATACTAATATTTTCCTCAGGGCTCTCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCATGTTTCCTAAACTACTGTGGACTCATGTTCCACTGACTTGCATGTGGTATAAGACACAGCATTaGAAACTGACTGGTATCGAT | + |
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Preference number: 5 (lower is better) Translates to: SVMFPKLLWTHVPLTCMWYKTQH*KLTGID Trigger: ATCGATACCAGTCAGTTTCAAATGCTGTGTCTTATA...CCACATGCAAGTCAGTGGAACATGAGTCCACAGTAGTTTAGGAAACATGACAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS-3UTR CAA 90 bp | TTACATTTTGTACACTGTTTGCTTGAGTGGATAGAGCAACATGGAAGCTCAGATAAACGAATTGAACCATaGCAGCCAGAAGGCAATGCT | + |
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Preference number: 5 (lower is better) Translates to: LHFVHCLLEWIEQHGSSDKRIEP*QPEGNA Trigger: AGCATTGCCTTCTGGCTGCAATGGTTCAATTCGTTT...ATCTGAGCTTCCATGTTGCTCTATCCACTCAAGCAAACAGTGTACAAAATGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS TCA 72 bp | AAGGCAAATGAAGACATTAAAAATGCCAAGGGGACCTaGGCAGCTGGTGGCAAGATGCCAGTACTGTTAGAC | + |
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Preference number: 6 (lower is better) Translates to: KANEDIKNAKGT*AAGGKMPVLLD Trigger: GTCTAACAGTACTGGCATCTTGCCACCAGCTGCTCAGGTCCCCTTGGCATTTTTAATGTCTTCATTTGCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041676.3 ENSMUST00000234084.2 ENSMUST00000234565.2 |
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| CDS CAA 90 bp | CATCGGGCCATTTACCAAGAAAGCCAGTATCCAAACAGCCACCATTaGAGCAACAATCTTCATGATGCCAGTGTGTTGAGCCCTATAAGA | + |
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Preference number: 6 (lower is better) Translates to: HRAIYQESQYPNSHH*SNNLHDASVLSPIR Trigger: TCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATGGTGGCTGTTTGGATACTGGCTTTCTTGGTAAATGGCCCGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041676.3 |
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| CDS TCA 72 bp | AAGGCAGTATTCTCTTCAGTGAAACACACGTCAGTGTaGGAATGCATCACAGAGTGGACACAAGCATTTGAA | + |
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Preference number: 6 (lower is better) Translates to: KAVFSSVKHTSV*ECITEWTQAFE Trigger: TTCAAATGCTTGTGTCCACTCTGTGATGCATTCTCACACTGACGTGTGTTTCACTGAAGAGAATACTGCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234565.2 |
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