RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HRH3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039059

Ensembl transcript IDs: ENSMUST00000056480.10, ENSMUST00000163215.8, ENSMUST00000164442.2, ENSMUST00000165248.8, ENSMUST00000165762.8, ENSMUST00000166724.2, ENSMUST00000171736.8

Found 136 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGGGTGGGGCAGGCAGAAGCAGCTGGCGCGGCTCAGCCGGAAGCTaGAGCGCCGAGGGAGGAGGGCGTGGGAGCCCACACCTGCCAATC +
Preference number: 1 (lower is better)
Translates to: GGGAGRSSWRGSAGS*SAEGGGRGSPHLPI
Trigger: GATTGGCAGGTGTGGGCTCCCACGCCCTCCTCCCTCGGCGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCACCCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 90 bp GCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTGGGGGTaGGGCAGGCAGAAGCAGCTGGCGCGGCTCAGCCGGAAGCTGCAG +
Preference number: 1 (lower is better)
Translates to: ADGASRAGLSSRAWG*GRQKQLARLSRKLQ
Trigger: CTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCACCCCCAGGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR GCA 90 bp CCGGAAGCTGCAGCGCCGAGGGAGGAGGGCGTGGGAGCCCACACCTaGCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTCTTGAT +
Preference number: 1 (lower is better)
Translates to: PEAAAPREEGVGAHT*QSSPELLGNFVSLD
Trigger: ATCAAGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCACGCCCTCCTCCCTCGGCGCTGCAGCTTCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 90 bp CCTCGGGGATGGAGCTGCCACCGGACAGGTACTCCCAACTCAGGATaGCAGGCCCATACAGCAGGAAGGCCAGCACCCACACCAGTGCCA +
Preference number: 1 (lower is better)
Translates to: PRGWSCHRTGTPNSG*QAHTAGRPAPTPVP
Trigger: TGGCACTGGTGTGGGTGCTGGCCTTCCTGCTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR GCA 90 bp CCTCAGAACAGGTACAAGGGCCTGGCCGTAGAAGGGTGGGGCAGCTaGTCACTTCCAGCACTGCTCCAGGGAGCCATGGGGCTGGACCTT +
Preference number: 1 (lower is better)
Translates to: PQNRYKGLAVEGWGS*SLPALLQGAMGLDL
Trigger: AAGGTCCAGCCCCATGGCTCCCTGGAGCAGTGCTGGAAGTGAGCAGCTGCCCCACCCTTCTACGGCCAGGCCCTTGTACCTGTTCTGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR TCA 90 bp GAGGTGGAAGGCATGCCTGGGACTCCCGGATTGTCTCTTCTGGGGTaGAGGAGAATGTGGCGGCAAAGCCAGCCAGCACACTCCAGTTCC +
Preference number: 1 (lower is better)
Translates to: EVEGMPGTPGLSLLG*RRMWRQSQPAHSSS
Trigger: GGAACTGGAGTGTGCTGGCTGGCTTTGCCGCCACATTCTCCTTCACCCCAGAAGAGACAATCCGGGAGTCCCAGGCATGCCTTCCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR TCA 90 bp GCAAAGCATTCCTCCCAGGTGTCGAGAACCTGCTCTCCCTCCTGCTaGCTGTCCCATGAGCCGAAGAGCCGCTCTACCCCACAACCAACC +
Preference number: 1 (lower is better)
Translates to: AKHSSQVSRTCSPSC*LSHEPKSRSTPQPT
Trigger: GGTTGGTTGTGGGGTAGAGCGGCTCTTCGGCTCATGGGACAGTCAGCAGGAGGGAGAGCAGGTTCTCGACACCTGGGAGGAATGCTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 90 bp GTGGCAGGTGTGTGCACATGCAGGGCGCATTGCCAGGGCAGGAGCTaGGAGCACACACCAAGGTTTGCATTAGGGAGGACACCAACCACT +
Preference number: 1 (lower is better)
Translates to: VAGVCTCRAHCQGRS*EHTPRFALGRTPTT
Trigger: AGTGGTTGGTGTCCTCCCTAATGCAAACCTTGGTGTGTGCTCCCAGCTCCTGCCCTGGCAATGCGCCCTGCATGTGCACACACCTGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR GCA 90 bp AAGTGTGTGGTGGAAGTGGCAGGTGTGTGCACATGCAGGGCGCATTaGCAGGGCAGGAGCTGGGAGCACACACCAAGGTTTGCATTAGGG +
Preference number: 1 (lower is better)
Translates to: KCVVEVAGVCTCRAH*QGRSWEHTPRFALG
Trigger: CCCTAATGCAAACCTTGGTGTGTGCTCCCAGCTCCTGCCCTGGCAATGCGCCCTGCATGTGCACACACCTGCCACTTCCACCACACACTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 90 bp AGTACCAGTTGTAGAAGAACTCAGCATAGCAGTGGCCCTCGGGGATaGAGCTGCCACCGGACAGGTACTCCCAACTCAGGATGGCAGGCC +
Preference number: 1 (lower is better)
Translates to: STSCRRTQHSSGPRG*SCHRTGTPNSGWQA
Trigger: GGCCTGCCATCCTGAGTTGGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCCACTGCTATGCTGAGTTCTTCTACAACTGGTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR TCA 90 bp GCGACTTGGCTACCTTCTTGTCCCGCGACAGCCGAAAGCGCTGGGTaGTGCTTTGGGATACCATCTTCATGCGCTTCTCCAAGGACGCTG +
Preference number: 1 (lower is better)
Translates to: ATWLPSCPATAESAG*CFGIPSSCASPRTL
Trigger: CAGCGTCCTTGGAGAAGCGCATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAGAAGGTAGCCAAGTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR GCA 90 bp CAGCAAAGGGCATCGCCCCAGATCGTCTTGGGAGAGAGAAGGTATTaGAAGTGTGTGGTGGAAGTGGCAGGTGTGTGCACATGCAGGGCG +
Preference number: 1 (lower is better)
Translates to: QQRASPQIVLGERRY*KCVVEVAGVCTCRA
Trigger: CGCCCTGCATGTGCACACACCTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGCGATGCCCTTTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR GCA 90 bp AGTTGTAGAAGAACTCAGCATAGCAGTGGCCCTCGGGGATGGAGCTaGCACCGGACAGGTACTCCCAACTCAGGATGGCAGGCCCATACA +
Preference number: 1 (lower is better)
Translates to: SCRRTQHSSGPRGWS*HRTGTPNSGWQAHT
Trigger: TGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCCACTGCTATGCTGAGTTCTTCTACAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CCA 90 bp GACACTTCATGGGGCAAAGAGTTGAAGGGAGAGGGGGTTAGGAGCTaGGCTCCGGGATTAAGGAAGAGACAGCGGCAGCAAAGGGCATCG +
Preference number: 1 (lower is better)
Translates to: DTSWGKELKGEGVRS*APGLRKRQRQQRAS
Trigger: CGATGCCCTTTGCTGCCGCTGTCTCTTCCTTAATCCCGGAGCCCAGCTCCTAACCCCCTCTCCCTTCAACTCTTTGCCCCATGAAGTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 90 bp GAAGAGCAGAGAAGCTTCAAGGTTCCTGGGGCGCTTGACACTTCATaGGGCAAAGAGTTGAAGGGAGAGGGGGTTAGGAGCTGGGCTCCG +
Preference number: 1 (lower is better)
Translates to: EEQRSFKVPGALDTS*GKELKGEGVRSWAP
Trigger: CGGAGCCCAGCTCCTAACCCCCTCTCCCTTCAACTCTTTGCCCCATGAAGTGTCAAGCGCCCCAGGAACCTTGAAGCTTCTCTGCTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 90 bp GCCAGCGACTTGGCTACCTTCTTGTCCCGCGACAGCCGAAAGCGCTaGGTGATGCTTTGGGATACCATCTTCATGCGCTTCTCCAAGGAC +
Preference number: 1 (lower is better)
Translates to: ASDLATFLSRDSRKR*VMLWDTIFMRFSKD
Trigger: GTCCTTGGAGAAGCGCATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAGAAGGTAGCCAAGTCGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CCA 90 bp AGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTaGCAGGTGTGTGCACATGCAGGGCGCATTGCCAGGGCAGGAGCT +
Preference number: 1 (lower is better)
Translates to: RSSWEREGIASVWWK*QVCAHAGRIARAGA
Trigger: AGCTCCTGCCCTGGCAATGCGCCCTGCATGTGCACACACCTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 90 bp GCTACCTTCTTGTCCCGCGACAGCCGAAAGCGCTGGGTGATGCTTTaGGATACCATCTTCATGCGCTTCTCCAAGGACGCTGAAGACGCT +
Preference number: 1 (lower is better)
Translates to: ATFLSRDSRKRWVML*DTIFMRFSKDAEDA
Trigger: AGCGTCTTCAGCGTCCTTGGAGAAGCGCATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAGAAGGTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CCA 90 bp TATGCAAAGGAGGACATCACTGGCACTGCACTGAGTGTGTGGAGGTaGAAGGCATGCCTGGGACTCCCGGATTGTCTCTTCTGGGGTGAA +
Preference number: 1 (lower is better)
Translates to: YAKEDITGTALSVWR*KACLGLPDCLFWGE
Trigger: TTCACCCCAGAAGAGACAATCCGGGAGTCCCAGGCATGCCTTCCACCTCCACACACTCAGTGCAGTGCCAGTGATGTCCTCCTTTGCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CCA 90 bp CTTGAGGAGCTGCCGGAGCTGGAGGTAGGCGAGGCAGCAGCGCCTCCACCGCTGATCAGGTGGGGGTTCTaGACCAGCCTCTCGGCCCCC +
Preference number: 2 (lower is better)
Translates to: LEELPELEVGEAAAPPPLIRWGF*TSLSAP
Trigger: GGGGGCCGAGAGGCTGGTCCAGAACCCCCACCTGAT...CAGCGGTGGAGGCGCTGCTGCCTCGCCTACCTCCAGCTCCGGCAGCTCCTCAAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR TCA 90 bp GGTGGGGGTTCTGGACCAGCCTCTCGGCCCCCATCCAGCCGAAGACGAGTGCGCGCCCCACTGCCGGGTTaGTGCTCTAAGAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: GGGSGPASRPPSSRRRVRAPLPG*CSKRLP
Trigger: TGGCAGCCTCTTAGAGCATCAACCCGGCAGTGGGGC...GCGCACTCGTCTTCGGCTGGATGGGGGCCGAGAGGCTGGTCCAGAACCCCCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CCA 90 bp GGGGTTCTGGACCAGCCTCTCGGCCCCCATCCAGCCGAAGACGAGTGCGCCTCTAGTGGCCCTCGGGGATaGAGCTGCCACCGGACAGGT +
Preference number: 2 (lower is better)
Translates to: GVLDQPLGPHPAEDECASSGPRG*SCHRTG
Trigger: ACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCCACT...AGAGGCGCACTCGTCTTCGGCTGGATGGGGGCCGAGAGGCTGGTCCAGAACCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR GCA 90 bp GGCCTGGCCGTAGAAGGGTGGGGCAGCTGCTCACTTCCAGCACTGCTCCAGGGAAGCGTGGCCTCTCAGTaGCCCTTGAGGAGCTGCCGG +
Preference number: 2 (lower is better)
Translates to: GLAVEGWGSCSLPALLQGSVASQ*PLRSCR
Trigger: CCGGCAGCTCCTCAAGGGGCACTGAGAGGCCACGCT...TCCCTGGAGCAGTGCTGGAAGTGAGCAGCTGCCCCACCCTTCTACGGCCAGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR TCA 90 bp AGGGCCCACGCTCGGGCTCCCCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAAGGAGCCCCTTTTGAGTaGGCGTGGCCTCTCAGTGCC +
Preference number: 2 (lower is better)
Translates to: RAHARAPPQNRYKGLAVEGAPFE*AWPLSA
Trigger: GGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCC...TTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGGGGAGCCCGAGCGTGGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR GCA 90 bp GCCATGGCAAGCAGCCCGGATGATCATGAGGAGTGTGTACGGGGCCCAGCAGAGCCACCAGCCACAGCTTaGAGAGGCCCCGGCCAAAGG +
Preference number: 2 (lower is better)
Translates to: AMASSPDDHEECVRGPAEPPATA*RGPGQR
Trigger: CCTTTGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGG...CTCTGCTGGGCCCCGTACACACTCCTCATGATCATCCGGGCTGCTTGCCATGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR GCA 90 bp AGGGCCCACGCTCGGGCTCCCCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAACCAGGGCACAAGGATTaGAGAGCATGCAGAGGCCTG +
Preference number: 2 (lower is better)
Translates to: RAHARAPPQNRYKGLAVEPGHKD*RACRGL
Trigger: CAGGCCTCTGCATGCTCTGCAATCCTTGTGCCCTGG...TTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGGGGAGCCCGAGCGTGGGCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CCA 90 bp AGGGCCCACGCTCGGGCTCCCCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAATGCCAGGGCAGGAGCTaGGAGCACACACCAAGGTTT +
Preference number: 2 (lower is better)
Translates to: RAHARAPPQNRYKGLAVECQGRS*EHTPRF
Trigger: AAACCTTGGTGTGTGCTCCCAGCTCCTGCCCTGGCA...TTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGGGGAGCCCGAGCGTGGGCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CCA 90 bp CCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAAGGGTGGGGCAGCTGCTCACTGGGTTGGGCATCAGGTaGGGGTTCTGGACCAGCCTC +
Preference number: 2 (lower is better)
Translates to: PSEQVQGPGRRRVGQLLTGLGIR*GFWTSL
Trigger: GAGGCTGGTCCAGAACCCCCACCTGATGCCCAACCC...AGTGAGCAGCTGCCCCACCCTTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CAA 90 bp CGCTTCTCCAAGGACGCTGAAGACGCTGATGGCTTGGAGCCCCTTTaGAGTGAGCGTGGCCTCTCAGTGCCCCTTGAGGAGCTGCCGGAG +
Preference number: 2 (lower is better)
Translates to: RFSKDAEDADGLEPL*SERGLSVPLEELPE
Trigger: CTCCGGCAGCTCCTCAAGGGGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCGTCTTCAGCGTCCTTGGAGAAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CAA 90 bp GCTGCTCACTTCCAGCACTGCTCCAGGGAGCCATGGGGCTGGACCTaGAGCTTCTGGGGGCAGAGGAGCTTGGTGAAGGCTCTACGGAAG +
Preference number: 2 (lower is better)
Translates to: AAHFQHCSREPWGWT*SFWGQRSLVKALRK
Trigger: CTTCCGTAGAGCCTTCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCATGGCTCCCTGGAGCAGTGCTGGAAGTGAGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR TCA 90 bp GTGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTGCCCCACTGCCGGGTTaGTGCTCTAAGAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: VGAHTCQSSPELLGNFVSAPLPG*CSKRLP
Trigger: TGGCAGCCTCTTAGAGCATCAACCCGGCAGTGGGGC...AGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CCA 90 bp TCACTTCCAGCACTGCTCCAGGGAGCCATGGGGCTGGACCTTGAGCTTCTGGGGACCTGTGCAATGGCATaGCCTCCCCGTGCCCCTTTG +
Preference number: 2 (lower is better)
Translates to: SLPALLQGAMGLDLELLGTCAMA*PPRAPL
Trigger: CAAAGGGGCACGGGGAGGCCATGCCATTGCACAGGT...CCCCAGAAGCTCAAGGTCCAGCCCCATGGCTCCCTGGAGCAGTGCTGGAAGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CCA 90 bp GAAGACGCTGATGGCTTGGAGCCCCTTTTGAGTGAGCGTGGCCTCTCAGTGCCCCCCATACCTGTGCAATaGCATGGCCTCCCCGTGCCC +
Preference number: 2 (lower is better)
Translates to: EDADGLEPLLSERGLSVPPIPVQ*HGLPVP
Trigger: GGGCACGGGGAGGCCATGCCATTGCACAGGTATGGG...GGGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCGTCTTC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CAA 90 bp GGGGCCCAGCAGAGCCCAAAGATGCTCACGATGATAGCCAGCGACTaGGCTACCTTCTTGTCCCGCGACAGCCGAAAGCGCTGGGTGATG +
Preference number: 2 (lower is better)
Translates to: GAQQSPKMLTMIASD*ATFLSRDSRKRWVM
Trigger: CATCACCCAGCGCTTTCGGCTGTCGCGGGACAAGAAGGTAGCCAAGTCGCTGGCTATCATCGTGAGCATCTTTGGGCTCTGCTGGGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CCA 90 bp CCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCGGTGGAAGGCATGCCTaGGACTCCCGGATTGTCTCT +
Preference number: 2 (lower is better)
Translates to: PNSDCADGASRAGLSSRAGGRHA*DSRIVS
Trigger: AGAGACAATCCGGGAGTCCCAGGCATGCCTTCCACC...GGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CCA 90 bp GGCCTGGCCGTAGAAGGGTGGGGCAGCTGCTCACTTCCAGCACTGCTCCAGGGACGCTGGGTGATGCTTTaGGATACCATCTTCATGCGC +
Preference number: 2 (lower is better)
Translates to: GLAVEGWGSCSLPALLQGRWVML*DTIFMR
Trigger: GCGCATGAAGATGGTATCCCAAAGCATCACCCAGCG...TCCCTGGAGCAGTGCTGGAAGTGAGCAGCTGCCCCACCCTTCTACGGCCAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR GCA 90 bp GTGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTTGGAGGTGGAAGGCATaGCTGGGACTCCCGGATTGT +
Preference number: 2 (lower is better)
Translates to: VGAHTCQSSPELLGNFVSWRWKA*LGLPDC
Trigger: ACAATCCGGGAGTCCCAGGCATGCCTTCCACCTCCA...AGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CCA 90 bp AATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTGGACTGCACTGAGTGTGTaGAGGTGGAAGGCATGCCTG +
Preference number: 2 (lower is better)
Translates to: NSDCADGASRAGLSSRAWTALSV*RWKACL
Trigger: CAGGCATGCCTTCCACCTCCACACACTCAGTGCAGT...CCAGGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 90 bp CAAGTGTGTGGTGGAAGTGGCAGGTGTGTGCACATGCAGGGCGCATaGCCAGGGCAGGAGCTGGGAGCACACACCAAGGTTTGCATTAGG +
Preference number: 2 (lower is better)
Translates to: QVCGGSGRCVHMQGA*PGQELGAHTKVCIR
Trigger: CCTAATGCAAACCTTGGTGTGTGCTCCCAGCTCCTGCCCTGGCAATGCGCCCTGCATGTGCACACACCTGCCACTTCCACCACACACTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR TCA 90 bp AATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTGGTTGTCTCTTCTGGGGTaGAGGAGAATGTGGCGGCAA +
Preference number: 2 (lower is better)
Translates to: NSDCADGASRAGLSSRAWLSLLG*RRMWRQ
Trigger: TTGCCGCCACATTCTCCTTCACCCCAGAAGAGACAA...CCAGGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR GCA 90 bp GCCCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCACATGCAGGGCGCATTaGCAGGGCAGGAGCTGGGAG +
Preference number: 2 (lower is better)
Translates to: APDRLGREKVLQVCGGSGTCRAH*QGRSWE
Trigger: CTCCCAGCTCCTGCCCTGGCAATGCGCCCTGCATGT...GCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR GCA 90 bp CTTGTCCCGCGACAGCCGAAAGCGCTGGGTGATGCTTTGGGATACCATCTTCATCCCACCCCATACCTGTaGAATGGCATGGCCTCCCCG +
Preference number: 2 (lower is better)
Translates to: LVPRQPKALGDALGYHLHPTPYL*NGMASP
Trigger: CGGGGAGGCCATGCCATTGCACAGGTATGGGGTGGG...ATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CCA 90 bp CCACCCCCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGCCCCAGATCGTCTTaGGAGAGAGAAGGTATTGCA +
Preference number: 2 (lower is better)
Translates to: PPPNSDCADGASRAGLSSRPRSS*EREGIA
Trigger: TGCAATACCTTCTCTCTCCCAAGACGATCTGGGGCG...GGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGGGGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR GCA 90 bp CTTGTCCCGCGACAGCCGAAAGCGCTGGGTGATGCTTTGGGATACCATCTTCATCAGCACCCACACCAGTaGCATCTTCCGAACAGCCCG +
Preference number: 2 (lower is better)
Translates to: LVPRQPKALGDALGYHLHQHPHQ*HLPNSP
Trigger: CGGGCTGTTCGGAAGATGGCACTGGTGTGGGTGCTG...ATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CAA 90 bp AGCCCAAAGATGCTCACGATGATAGCCAGCGACTTGGCTACCTTCTaGTCCCGCGACAGCCGAAAGCGCTGGGTGATGCTTTGGGATACC +
Preference number: 2 (lower is better)
Translates to: SPKMLTMIASDLATF*SRDSRKRWVMLWDT
Trigger: GGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAGAAGGTAGCCAAGTCGCTGGCTATCATCGTGAGCATCTTTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CCA 90 bp TTGAAGGGAGAGGGGGTTAGGAGCTGGGCTCCGGGATTAAGGAAGAGACAGCGGAGTGTGTGGTGGAAGTaGCAGGTGTGTGCACATGCA +
Preference number: 2 (lower is better)
Translates to: LKGEGVRSWAPGLRKRQRSVWWK*QVCAHA
Trigger: TGCATGTGCACACACCTGCCACTTCCACCACACACT...CCGCTGTCTCTTCCTTAATCCCGGAGCCCAGCTCCTAACCCCCTCTCCCTTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR TCA 90 bp CCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTCTCCTCCATCTTCCTaGAAACATCCAGAATGGAAG +
Preference number: 2 (lower is better)
Translates to: PNSDCADGASRAGLSSRASPPSS*KHPEWK
Trigger: CTTCCATTCTGGATGTTTTCAGGAAGATGGAGGAGA...GGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR GCA 90 bp TTGAAGGGAGAGGGGGTTAGGAGCTGGGCTCCGGGATTAAGGAAGAGACAGCGGGCACACACCAAGGTTTaGATTAGGGAGGACACCAAC +
Preference number: 2 (lower is better)
Translates to: LKGEGVRSWAPGLRKRQRAHTKV*IREDTN
Trigger: GTTGGTGTCCTCCCTAATGCAAACCTTGGTGTGTGC...CCGCTGTCTCTTCCTTAATCCCGGAGCCCAGCTCCTAACCCCCTCTCCCTTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 90 bp TTAAGGAAGAGACAGCGGCAGCAAAGGGCATCGCCCCAGATCGTCTaGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCAGGT +
Preference number: 2 (lower is better)
Translates to: LRKRQRQQRASPQIV*GERRYCKCVVEVAG
Trigger: ACCTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGCGATGCCCTTTGCTGCCGCTGTCTCTTCCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 90 bp ATTGTGTCTTCACATTGGCAGAGGCAGCACACCAGGGCACAAGGATaGCAGAGCATGCAGAGGCCTGAGGTAAGTACACAGGACGAGGCA +
Preference number: 2 (lower is better)
Translates to: IVSSHWQRQHTRAQG*QSMQRPEVSTQDEA
Trigger: TGCCTCGTCCTGTGTACTTACCTCAGGCCTCTGCATGCTCTGCAATCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATGTGAAGACACAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CCA 90 bp AGCAGAGAAGCTTCAAGGTTCCTGGGGCGCTTGACACTTCATGGGGCAAAGAGTCCGGATTGTCTCTTCTaGGGTGAAGGAGAATGTGGC +
Preference number: 2 (lower is better)
Translates to: SREASRFLGRLTLHGAKSPDCLF*GEGECG
Trigger: GCCACATTCTCCTTCACCCCAGAAGAGACAATCCGG...ACTCTTTGCCCCATGAAGTGTCAAGCGCCCCAGGAACCTTGAAGCTTCTCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR GCA 72 bp GCAGGCAGAAGCAGCTGGCGCGGCTCAGCCGGAAGCTaGAGCGCCGAGGGAGGAGGGCGTGGGAGCCCACAC +
Preference number: 3 (lower is better)
Translates to: AGRSSWRGSAGS*SAEGGGRGSPH
Trigger: GTGTGGGCTCCCACGCCCTCCTCCCTCGGCGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CAA 90 bp GCTGGAGGTGGCGAGGGTTGGGCATCAGGTGGGGGTTCTGGACCAGCCTCTCGGTCCGAACAGCCCGTCTaGTGTCCCCCTGCTGGGCCC +
Preference number: 3 (lower is better)
Translates to: AGGGEGWASGGGSGPASRSEQPV*CPPAGP
Trigger: GGGCCCAGCAGGGGGACACAAGACGGGCTGTTCGGA...CCGAGAGGCTGGTCCAGAACCCCCACCTGATGCCCAACCCTCGCCACCTCCAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CAA 90 bp GGCCCTCGGGGATGGAGCTGCCACCGGACAGGTACTCCCAACTCAGGATGGCAGACCACCAGCCACAGCTaGCAGAGGCCCCGGCCAAAG +
Preference number: 3 (lower is better)
Translates to: GPRGWSCHRTGTPNSGWQTTSHS*QRPRPK
Trigger: CTTTGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGT...CTGCCATCCTGAGTTGGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR GCA 72 bp AGGTACAAGGGCCTGGCCGTAGAAGGGTGGGGCAGCTaGTCACTTCCAGCACTGCTCCAGGGAGCCATGGGG +
Preference number: 3 (lower is better)
Translates to: RYKGLAVEGWGS*SLPALLQGAMG
Trigger: CCCCATGGCTCCCTGGAGCAGTGCTGGAAGTGAGCAGCTGCCCCACCCTTCTACGGCCAGGCCCTTGTACCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CAA 90 bp CTCAGCATAGCAGTGGCCCTCGGGGATGGAGCTGCCACCGGACAGGTACTCCCAAGGCTGCCATGGCATTaGGAGCAGACCCCGGACAAA +
Preference number: 3 (lower is better)
Translates to: LSIAVALGDGAATGQVLPRLPWH*EQTPDK
Trigger: TTTGTCCGGGGTCTGCTCCAAATGCCATGGCAGCCT...TGGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCCACTGCTATGCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR TCA 72 bp TCCTCCCAGGTGTCGAGAACCTGCTCTCCCTCCTGCTaGCTGTCCCATGAGCCGAAGAGCCGCTCTACCCCA +
Preference number: 3 (lower is better)
Translates to: SSQVSRTCSPSC*LSHEPKSRSTP
Trigger: TGGGGTAGAGCGGCTCTTCGGCTCATGGGACAGTCAGCAGGAGGGAGAGCAGGTTCTCGACACCTGGGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR GCA 72 bp AGGCCCATACAGCAGGAAGGCCAGCACCCACACCAGTaGCATCTTCCGAACAGCCCGTCTTGTGTCCCCCTG +
Preference number: 3 (lower is better)
Translates to: RPIQQEGQHPHQ*HLPNSPSCVPL
Trigger: CAGGGGGACACAAGACGGGCTGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTGCTGTATGGGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CCA 72 bp TGGAGCTGCCACCGGACAGGTACTCCCAACTCAGGATaGCAGGCCCATACAGCAGGAAGGCCAGCACCCACA +
Preference number: 3 (lower is better)
Translates to: WSCHRTGTPNSG*QAHTAGRPAPT
Trigger: TGTGGGTGCTGGCCTTCCTGCTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCCGGTGGCAGCTCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CCA 72 bp TGCTCCAGGGAGCCATGGGGCTGGACCTTGAGCTTCTaGGGGCAGAGGAGCTTGGTGAAGGCTCTACGGAAG +
Preference number: 3 (lower is better)
Translates to: CSREPWGWTLSF*GQRSLVKALRK
Trigger: CTTCCGTAGAGCCTTCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCATGGCTCCCTGGAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CAA 90 bp GGACCAGCCTCTCGGCCCCCATCCAGCCGAAGACGAGTGCGCCTCTGGATGTTCCTGATCAGCACGATGTaGAAGACTGAGGAGGCACAC +
Preference number: 3 (lower is better)
Translates to: GPASRPPSSRRRVRLWMFLISTM*KTEEAH
Trigger: GTGTGCCTCCTCAGTCTTCAACATCGTGCTGATCAG...GAACATCCAGAGGCGCACTCGTCTTCGGCTGGATGGGGGCCGAGAGGCTGGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR GCA 72 bp GTGGAAGTGGCAGGTGTGTGCACATGCAGGGCGCATTaGCAGGGCAGGAGCTGGGAGCACACACCAAGGTTT +
Preference number: 3 (lower is better)
Translates to: VEVAGVCTCRAH*QGRSWEHTPRF
Trigger: AAACCTTGGTGTGTGCTCCCAGCTCCTGCCCTGGCAATGCGCCCTGCATGTGCACACACCTGCCACTTCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR GCA 72 bp AGAACTCAGCATAGCAGTGGCCCTCGGGGATGGAGCTaGCACCGGACAGGTACTCCCAACTCAGGATGGCAG +
Preference number: 3 (lower is better)
Translates to: RTQHSSGPRGWS*HRTGTPNSGWQ
Trigger: CTGCCATCCTGAGTTGGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCCACTGCTATGCTGAGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CAA 90 bp GGAGGTGGAAGGCATGCCTGGGACTCCCGGATTGTCTCTTCTGGGGTGAAGGAGAGGCTGCCATGGCATTaGGAGCAGACCCCGGACAAA +
Preference number: 3 (lower is better)
Translates to: GGGRHAWDSRIVSSGVKERLPWH*EQTPDK
Trigger: TTTGTCCGGGGTCTGCTCCAAATGCCATGGCAGCCT...CTCCTTCACCCCAGAAGAGACAATCCGGGAGTCCCAGGCATGCCTTCCACCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 72 bp GTGTGCACATGCAGGGCGCATTGCCAGGGCAGGAGCTaGGAGCACACACCAAGGTTTGCATTAGGGAGGACA +
Preference number: 3 (lower is better)
Translates to: VCTCRAHCQGRS*EHTPRFALGRT
Trigger: TGTCCTCCCTAATGCAAACCTTGGTGTGTGCTCCCAGCTCCTGCCCTGGCAATGCGCCCTGCATGTGCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR-3UTR CAA 90 bp TCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCAGGTGTGTCACATGCAGGGCGCATaGCCAGGGCAGGAGCTGGGA +
Preference number: 3 (lower is better)
Translates to: SSWEREGIASVWWKWQVCHMQGA*PGQELG
Trigger: TCCCAGCTCCTGCCCTGGCAATGCGCCCTGCATGTG...ACACACCTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR GCA 72 bp ACTGGCACTGCACTGAGTGTGTGGAGGTGGAAGGCATaGCTGGGACTCCCGGATTGTCTCTTCTGGGGTGAA +
Preference number: 3 (lower is better)
Translates to: TGTALSVWRWKA*LGLPDCLFWGE
Trigger: TTCACCCCAGAAGAGACAATCCGGGAGTCCCAGGCATGCCTTCCACCTCCACACACTCAGTGCAGTGCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 72 bp GCAAAGGAGGACATCACTGGCACTGCACTGAGTGTGTaGAGGTGGAAGGCATGCCTGGGACTCCCGGATTGT +
Preference number: 3 (lower is better)
Translates to: AKEDITGTALSV*RWKACLGLPDC
Trigger: ACAATCCGGGAGTCCCAGGCATGCCTTCCACCTCCACACACTCAGTGCAGTGCCAGTGATGTCCTCCTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 72 bp TGTAGAAGAACTCAGCATAGCAGTGGCCCTCGGGGATaGAGCTGCCACCGGACAGGTACTCCCAACTCAGGA +
Preference number: 3 (lower is better)
Translates to: CRRTQHSSGPRG*SCHRTGTPNSG
Trigger: TCCTGAGTTGGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCCACTGCTATGCTGAGTTCTTCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CAA 90 bp GTGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTGGGAGAGAGAAGGTATaGCAAGTGTGTGGTGGAAGT +
Preference number: 3 (lower is better)
Translates to: VGAHTCQSSPELLGNFVSGREKV*QVCGGS
Trigger: ACTTCCACCACACACTTGCAATACCTTCTCTCTCCC...AGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 72 bp TGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTaGCAGGTGTGTGCACATGCAGGGCGCATTGCCAGG +
Preference number: 3 (lower is better)
Translates to: WEREGIASVWWK*QVCAHAGRIAR
Trigger: CCTGGCAATGCGCCCTGCATGTGCACACACCTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 72 bp GACAGCGGCAGCAAAGGGCATCGCCCCAGATCGTCTTaGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAG +
Preference number: 3 (lower is better)
Translates to: DSGSKGHRPRSS*EREGIASVWWK
Trigger: CTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGCGATGCCCTTTGCTGCCGCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 72 bp TTGTCCCGCGACAGCCGAAAGCGCTGGGTGATGCTTTaGGATACCATCTTCATGCGCTTCTCCAAGGACGCT +
Preference number: 3 (lower is better)
Translates to: LSRDSRKRWVML*DTIFMRFSKDA
Trigger: AGCGTCCTTGGAGAAGCGCATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR TCA 72 bp CACCAGGGCACAAGGATTGCAGAGCATGCAGAGGCCTaGGGTAAGTACACAGGACGAGGCAAAGCATTCCTC +
Preference number: 3 (lower is better)
Translates to: HQGTRIAEHAEA*GKYTGRGKAFL
Trigger: GAGGAATGCTTTGCCTCGTCCTGTGTACTTACCTCAGGCCTCTGCATGCTCTGCAATCCTTGTGCCCTGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR TCA 72 bp CTACCTTCTTGTCCCGCGACAGCCGAAAGCGCTGGGTaGTGCTTTGGGATACCATCTTCATGCGCTTCTCCA +
Preference number: 3 (lower is better)
Translates to: LPSCPATAESAG*CFGIPSSCASP
Trigger: TGGAGAAGCGCATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAGAAGGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CCA 72 bp AGAAGCTTCAAGGTTCCTGGGGCGCTTGACACTTCATaGGGCAAAGAGTTGAAGGGAGAGGGGGTTAGGAGC +
Preference number: 3 (lower is better)
Translates to: RSFKVPGALDTS*GKELKGEGVRS
Trigger: GCTCCTAACCCCCTCTCCCTTCAACTCTTTGCCCCATGAAGTGTCAAGCGCCCCAGGAACCTTGAAGCTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CCA 72 bp TTGGCTACCTTCTTGTCCCGCGACAGCCGAAAGCGCTaGGTGATGCTTTGGGATACCATCTTCATGCGCTTC +
Preference number: 3 (lower is better)
Translates to: LATFLSRDSRKR*VMLWDTIFMRF
Trigger: GAAGCGCATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAGAAGGTAGCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR-3UTR CAA 90 bp CCACCCCCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCAGCTCCTCGGCAATTTaGTCTCTCTTGATTAAACAT +
Preference number: 3 (lower is better)
Translates to: PPPNSDCADGASRAGLSSSSSAI*SLLIKH
Trigger: ATGTTTAATCAAGAGAGACAAAATTGCCGAGGAGCT...GGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGGGGGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR TCA 90 bp AGGGCCCACGCTCGGGCTCCCCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAAGGTAGAGGACGGGGTTaGCGGCCGAGTTGGCCCACA +
Preference number: 4 (lower is better)
Translates to: RAHARAPPQNRYKGLAVEGRGRG*RPSWPT
Trigger: TGTGGGCCAACTCGGCCGTCAACCCCGTCCTCTACC...TTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGGGGAGCCCGAGCGTGGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR TCA 90 bp GACCAGCCTCTCGGCCCCCATCCAGCCGAAGACGAGTGCGCCTCTGGATGTTCACCACGAAGGCGAGCATaGCCAGCGCGTTGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: DQPLGPHPAEDECASGCSPRRRA*PARCPA
Trigger: TGCTGGGCAACGCGCTGGTCATGCTCGCCTTCGTGG...TGAACATCCAGAGGCGCACTCGTCTTCGGCTGGATGGGGGCCGAGAGGCTGGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR CCA 90 bp AGGGCCCACGCTCGGGCTCCCCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAAGGGACGCAGTGGCCATaGCAAGCAGCCCGGATGATC +
Preference number: 4 (lower is better)
Translates to: RAHARAPPQNRYKGLAVEGTQWP*QAARMI
Trigger: GATCATCCGGGCTGCTTGCCATGGCCACTGCGTCCC...TTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGGGGAGCCCGAGCGTGGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 72 bp GCACCCACACCAGTGCCATCTTCCGAACAGCCCGTCTaGTGTCCCCCTGCTGGGCCCGGTAGGAGACAGCTC +
Preference number: 4 (lower is better)
Translates to: APTPVPSSEQPV*CPPAGPGRRQL
Trigger: GAGCTGTCTCCTACCGGGCCCAGCAGGGGGACACAAGACGGGCTGTTCGGAAGATGGCACTGGTGTGGGTGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR GCA 90 bp AATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTGGAGCGTGGCCTCTCAGTaGCCCTTGAGGAGCTGCCGG +
Preference number: 4 (lower is better)
Translates to: NSDCADGASRAGLSSRAWSVASQ*PLRSCR
Trigger: CCGGCAGCTCCTCAAGGGGCACTGAGAGGCCACGCT...CCAGGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp CCACCCCCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCAGTGGCCCTCGGGGATaGAGCTGCCACCGGACAGGT +
Preference number: 4 (lower is better)
Translates to: PPPNSDCADGASRAGLSSSGPRG*SCHRTG
Trigger: ACCTGTCCGGTGGCAGCTCCATCCCCGAGGGCCACT...GGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGGGGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR TCA 90 bp TGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTCCCACGAAGGCGAGCATaGCCAGCGCGTTGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: WEPTPANPAPSSSAILSLPRRRA*PARCPA
Trigger: TGCTGGGCAACGCGCTGGTCATGCTCGCCTTCGTGG...GAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR GCA 90 bp GCTGGAGGTGGCGAGGGTTGGGCATCAGGTGGGGGTTCTGGACCAGCCTCTCGGAGAAGTTGTTCTGGGTaGGGAGGCTCGAATCCGCCA +
Preference number: 4 (lower is better)
Translates to: AGGGEGWASGGGSGPASRRSCSG*GGSNPP
Trigger: TGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCT...CCGAGAGGCTGGTCCAGAACCCCCACCTGATGCCCAACCCTCGCCACCTCCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR CCA 90 bp GTGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTATCAGGTGGGGGTTCTaGACCAGCCTCTCGGCCCCC +
Preference number: 4 (lower is better)
Translates to: VGAHTCQSSPELLGNFVSIRWGF*TSLSAP
Trigger: GGGGGCCGAGAGGCTGGTCCAGAACCCCCACCTGAT...AGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR GCA 90 bp TTGAAGGGAGAGGGGGTTAGGAGCTGGGCTCCGGGATTAAGGAAGAGACAGCGGCCTCGGGGATGGAGCTaGCACCGGACAGGTACTCCC +
Preference number: 4 (lower is better)
Translates to: LKGEGVRSWAPGLRKRQRPRGWS*HRTGTP
Trigger: GGGAGTACCTGTCCGGTGGCAGCTCCATCCCCGAGG...CCGCTGTCTCTTCCTTAATCCCGGAGCCCAGCTCCTAACCCCCTCTCCCTTCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR GCA 90 bp AATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTGGCTCAACACCAGGGCCTaGCTCACCCACCCCATACCT +
Preference number: 4 (lower is better)
Translates to: NSDCADGASRAGLSSRAWLNTRA*LTHPIP
Trigger: AGGTATGGGGTGGGTGAGGCAGGCCCTGGTGTTGAG...CCAGGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 72 bp TTCCAGCACTGCTCCAGGGAGCCATGGGGCTGGACCTaGAGCTTCTGGGGGCAGAGGAGCTTGGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: FQHCSREPWGWT*SFWGQRSLVKA
Trigger: AGCCTTCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCATGGCTCCCTGGAGCAGTGCTGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR TCA 90 bp GGAGGTGGAAGGCATGCCTGGGACTCCCGGATTGTCTCTTCTGGGGTGAAGGAGGCTTGGAGCCCCTTTTaGGTGAGCGTGGCCTCTCAG +
Preference number: 4 (lower is better)
Translates to: GGGRHAWDSRIVSSGVKEAWSPF*VSVASQ
Trigger: CTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAGC...CTCCTTCACCCCAGAAGAGACAATCCGGGAGTCCCAGGCATGCCTTCCACCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp GGCCCACGCTCGGGCTCCCCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAAGGAGAAAGAAGTTGTTCTaGGTGCGGAGGCTCGAATCC +
Preference number: 4 (lower is better)
Translates to: GPRSGSPSEQVQGPGRRRRKKLF*VRRLES
Trigger: GGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCT...CCTTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGGGGAGCCCGAGCGTGGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056480.10
ENSMUST00000166724.2
CDS-3UTR CCA 90 bp GTGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTACCTGTGCAATGGCATaGCCTCCCCGTGCCCCTTTG +
Preference number: 4 (lower is better)
Translates to: VGAHTCQSSPELLGNFVSTCAMA*PPRAPL
Trigger: CAAAGGGGCACGGGGAGGCCATGCCATTGCACAGGT...AGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR TCA 90 bp ACACCAGGGCCTGCCTCACCCACCCCATACCTGTGCAATGGCATGGCCTCCCCGCGGAGATGGCGAGGTTaGGCAGAAAGAAGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: TPGPASPTPYLCNGMASPRRWRG*AERSCS
Trigger: AGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCG...CGGGGAGGCCATGCCATTGCACAGGTATGGGGTGGGTGAGGCAGGCCCTGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR GCA 90 bp AATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTGGAGAAGTTGTTCTGGGTaGGGAGGCTCGAATCCGCCA +
Preference number: 4 (lower is better)
Translates to: NSDCADGASRAGLSSRAWRSCSG*GGSNPP
Trigger: TGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCT...CCAGGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR GCA 90 bp GCCCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCCCACCAGCCACAGCTTaGAGAGGCCCCGGCCAAAGG +
Preference number: 4 (lower is better)
Translates to: APDRLGREKVLQVCGGSGPPATA*RGPGQR
Trigger: CCTTTGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGG...GCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp CCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCGACAGCCGAAAGCGCTaGGTGATGCTTTGGGATACC +
Preference number: 4 (lower is better)
Translates to: PNSDCADGASRAGLSSRADSRKR*VMLWDT
Trigger: GGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTC...GGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp GGTTCTGGACCAGCCTCTCGGCCCCCATCCAGCCGAAGACGAGTGCGCCTCTGGATAGGGTACATACAATaGGATGCAGAAGGCACGAGG +
Preference number: 4 (lower is better)
Translates to: GSGPASRPPSSRRRVRLWIGYIQ*DAEGTR
Trigger: CCTCGTGCCTTCTGCATCCCATTGTATGTACCCTAT...CCAGAGGCGCACTCGTCTTCGGCTGGATGGGGGCCGAGAGGCTGGTCCAGAACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CAA 72 bp AAGGACGCTGAAGACGCTGATGGCTTGGAGCCCCTTTaGAGTGAGCGTGGCCTCTCAGTGCCCCTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: KDAEDADGLEPL*SERGLSVPLEE
Trigger: CTCCTCAAGGGGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCGTCTTCAGCGTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR TCA 90 bp GGAGGTGGAAGGCATGCCTGGGACTCCCGGATTGTCTCTTCTGGGGTGAAGGAGGCCGAAAGCGCTGGGTaGTGCTTTGGGATACCATCT +
Preference number: 4 (lower is better)
Translates to: GGGRHAWDSRIVSSGVKEAESAG*CFGIPS
Trigger: AGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGC...CTCCTTCACCCCAGAAGAGACAATCCGGGAGTCCCAGGCATGCCTTCCACCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp GCCCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCGGGTTGGGCATCAGGTaGGGGTTCTGGACCAGCCTC +
Preference number: 4 (lower is better)
Translates to: APDRLGREKVLQVCGGSGGLGIR*GFWTSL
Trigger: GAGGCTGGTCCAGAACCCCCACCTGATGCCCAACCC...GCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp CCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCAGCCCATACCTGTGCAATaGCATGGCCTCCCCGTGCCC +
Preference number: 4 (lower is better)
Translates to: PRSSWEREGIASVWWKWQPIPVQ*HGLPVP
Trigger: GGGCACGGGGAGGCCATGCCATTGCACAGGTATGGG...CTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp TGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTCCGCTGGGTGATGCTTTaGGATACCATCTTCATGCGC +
Preference number: 4 (lower is better)
Translates to: WEPTPANPAPSSSAILSLRWVML*DTIFMR
Trigger: GCGCATGAAGATGGTATCCCAAAGCATCACCCAGCG...GAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 72 bp ATGCGCTTCTCCAAGGACGCTGAAGACGCTGATGGCTaGGAGCCCCTTTTGAGTGAGCGTGGCCTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: MRFSKDAEDADG*EPLLSERGLSV
Trigger: CACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCGTCTTCAGCGTCCTTGGAGAAGCGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CAA 72 bp CTTGTCCCGCGACAGCCGAAAGCGCTGGGTGATGCTTaGGGATACCATCTTCATGCGCTTCTCCAAGGACGC +
Preference number: 4 (lower is better)
Translates to: LVPRQPKALGDA*GYHLHALLQGR
Trigger: GCGTCCTTGGAGAAGCGCATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
3UTR CAA 72 bp CAGAGCCCAAAGATGCTCACGATGATAGCCAGCGACTaGGCTACCTTCTTGTCCCGCGACAGCCGAAAGCGC +
Preference number: 4 (lower is better)
Translates to: QSPKMLTMIASD*ATFLSRDSRKR
Trigger: GCGCTTTCGGCTGTCGCGGGACAAGAAGGTAGCCAAGTCGCTGGCTATCATCGTGAGCATCTTTGGGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR GCA 90 bp CGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCAGGTGTGTGCAGCACCCACACCAGTaGCATCTTCCGAACAGCCCG +
Preference number: 4 (lower is better)
Translates to: RLGREKVLQVCGGSGRCVQHPHQ*HLPNSP
Trigger: CGGGCTGTTCGGAAGATGGCACTGGTGTGGGTGCTG...CACACACCTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR GCA 90 bp TTAGGGAGGACACCAACCACTAAGTATGCAAAGGAGGACATCACTGGCACTGCACCCACCCCATACCTGTaGAATGGCATGGCCTCCCCG +
Preference number: 4 (lower is better)
Translates to: LGRTPTTKYAKEDITGTAPTPYL*NGMASP
Trigger: CGGGGAGGCCATGCCATTGCACAGGTATGGGGTGGG...TGCAGTGCCAGTGATGTCCTCCTTTGCATACTTAGTGGTTGGTGTCCTCCCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp GGCGCATTGCCAGGGCAGGAGCTGGGAGCACACACCAAGGTTTGCATTAGGGAGATAGGGTACATACAATaGGATGCAGAAGGCACCCAC +
Preference number: 4 (lower is better)
Translates to: GALPGQELGAHTKVCIREIGYIQ*DAEGTH
Trigger: GTGGGTGCCTTCTGCATCCCATTGTATGTACCCTAT...CTCCCTAATGCAAACCTTGGTGTGTGCTCCCAGCTCCTGCCCTGGCAATGCGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp CATCGCCCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGACCTTGAGCTTCTaGGGGCAGAGGAGCTTGGTG +
Preference number: 4 (lower is better)
Translates to: HRPRSSWEREGIASVWWKWTLSF*GQRSLV
Trigger: CACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCA...CTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGCGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 72 bp AGACAGCGGCAGCAAAGGGCATCGCCCCAGATCGTCTaGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAA +
Preference number: 4 (lower is better)
Translates to: RQRQQRASPQIV*GERRYCKCVVE
Trigger: TTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGCGATGCCCTTTGCTGCCGCTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR TCA 90 bp GCCCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCCGGAGATGGCGAGGTTaGGCAGAAAGAAGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: APDRLGREKVLQVCGGSGRRWRG*AERSCS
Trigger: AGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCG...GCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CCA 90 bp CTTGTCCCGCGACAGCCGAAAGCGCTGGGTGATGCTTTGGGATACCATCTTCATAGAAAGAAGTTGTTCTaGGTGCGGAGGCTCGAATCC +
Preference number: 4 (lower is better)
Translates to: LVPRQPKALGDALGYHLHRKKLF*VRRLES
Trigger: GGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCT...ATGAAGATGGTATCCCAAAGCATCACCCAGCGCTTTCGGCTGTCGCGGGACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR GCA 90 bp TTAGGGAGGACACCAACCACTAAGTATGCAAAGGAGGACATCACTGGCACTGCAGGGATACCATCTTCATaGGCTTCTCCAAGGACGCTG +
Preference number: 4 (lower is better)
Translates to: LGRTPTTKYAKEDITGTAGIPSS*ASPRTL
Trigger: CAGCGTCCTTGGAGAAGCGCATGAAGATGGTATCCC...TGCAGTGCCAGTGATGTCCTCCTTTGCATACTTAGTGGTTGGTGTCCTCCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
3UTR CAA 72 bp ACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTaGTCTCTCTTGATTAAACATCCAAGGAACATCAAG +
Preference number: 4 (lower is better)
Translates to: TPANPAPSSSAI*SLLIKHPRNIK
Trigger: CTTGATGTTCCTTGGATGTTTAATCAAGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR TCA 90 bp TTGATTAAACATCCAAGGAACATCAAGTTCACAGACTTGATGTTTTCTTCTCCTGGAGCCCCTTTTGAGTaGGCGTGGCCTCTCAGTGCC +
Preference number: 4 (lower is better)
Translates to: LIKHPRNIKFTDLMFSSPGAPFE*AWPLSA
Trigger: GGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCC...AGGAGAAGAAAACATCAAGTCTGTGAACTTGATGTTCCTTGGATGTTTAATCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp AATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTGGTGGAGGTGGCGAGGGTaGGGCATCAGGTGGGGGTTC +
Preference number: 5 (lower is better)
Translates to: NSDCADGASRAGLSSRAWWRWRG*GIRWGF
Trigger: GAACCCCCACCTGATGCCCAACCCTCGCCACCTCCA...CCAGGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp GGCCCACGCTCGGGCTCCCCCTCAGAACAGGTACAAGGGCCTGGCCGTAGAAGGGACTTGGCTACCTTCTaGTCCCGCGACAGCCGAAAG +
Preference number: 5 (lower is better)
Translates to: GPRSGSPSEQVQGPGRRRDLATF*SRDSRK
Trigger: CTTTCGGCTGTCGCGGGACAAGAAGGTAGCCAAGTC...CCTTCTACGGCCAGGCCCTTGTACCTGTTCTGAGGGGGAGCCCGAGCGTGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp CCACCCCCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCCATGGGGCTGGACCTaGAGCTTCTGGGGGCAGAGG +
Preference number: 5 (lower is better)
Translates to: PPPNSDCADGASRAGLSSPWGWT*SFWGQR
Trigger: CCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCATGG...GGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGGGGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp GGTGGGGGTTCTGGACCAGCCTCTCGGCCCCCATCCAGCCGAAGACGAGTGCGCTTGAGCAGAAAGAAGTaGTTCTGGGTGCGGAGGCTC +
Preference number: 5 (lower is better)
Translates to: GGGSGPASRPPSSRRRVRLSRKK*FWVRRL
Trigger: GAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAA...GCGCACTCGTCTTCGGCTGGATGGGGGCCGAGAGGCTGGTCCAGAACCCCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR CAA 90 bp TGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTCGGGTTGACGGCCGAGTaGGCCCACAGAAGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: WEPTPANPAPSSSAILSLGLTAE*AHRSQK
Trigger: CTTCTGGCTTCTGTGGGCCAACTCGGCCGTCAACCC...GAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS GCA 90 bp AGACTGAGGAGGCACACAGTAGGTAGTCTACCACCAGCCACAGCTTaGAGAGGCCCCGGCCAAAGGTCCAACGGCCGGTCAGCACATAGG +
Preference number: 5 (lower is better)
Translates to: RLRRHTVGSLPPATA*RGPGQRSNGRSAHR
Trigger: CCTATGTGCTGACCGGCCGTTGGACCTTTGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCAGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056480.10
ENSMUST00000163215.8
ENSMUST00000164442.2
ENSMUST00000165248.8
ENSMUST00000165762.8
ENSMUST00000171736.8
CDS-3UTR CAA 90 bp GCCCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCTCCGAACAGCCCGTCTaGTGTCCCCCTGCTGGGCCC +
Preference number: 5 (lower is better)
Translates to: APDRLGREKVLQVCGGSGSEQPV*CPPAGP
Trigger: GGGCCCAGCAGGGGGACACAAGACGGGCTGTTCGGA...GCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS CCA 90 bp TTCCAGCACTGCTCCAGGGAGCCATGGGGCTGGACCTTGAGCTTCTaGGGGCAGAGGAGCTTGGTGAAGGCTCTACGGAAGCTGTGCAAT +
Preference number: 5 (lower is better)
Translates to: FQHCSREPWGWTLSF*GQRSLVKALRKLCN
Trigger: ATTGCACAGCTTCCGTAGAGCCTTCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCATGGCTCCCTGGAGCAGTGCTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171736.8
CDS-3UTR CAA 90 bp CTGAGGAAGGGTGTGAAGAACTCGAGGGTGGAGGCCGTGATGAGAAAGTACCAGAGCATGACCAGCGCGTaGCCCAGCACTGTGGCCACG +
Preference number: 5 (lower is better)
Translates to: LRKGVKNSRVEAVMRKYQSMTSA*PSTVAT
Trigger: CGTGGCCACAGTGCTGGGCAACGCGCTGGTCATGCT...CTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTTCACACCCTTCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2
CDS-3UTR CAA 90 bp GGTGAAGGAGAATGTGGCGGCAAAGCCAGCCAGCACACTCCAGTTCCACCAACGGGCTTGGAGCCCCTTTaGAGTGAGCGTGGCCTCTCA +
Preference number: 5 (lower is better)
Translates to: GEGECGGKASQHTPVPPTGLEPL*SERGLS
Trigger: TGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCC...CGTTGGTGGAACTGGAGTGTGCTGGCTGGCTTTGCCGCCACATTCTCCTTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp CCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCAGAGCATGACCAGCGCGTaGCCCAGCACTGTGGCCACG +
Preference number: 5 (lower is better)
Translates to: PRSSWEREGIASVWWKWQSMTSA*PSTVAT
Trigger: CGTGGCCACAGTGCTGGGCAACGCGCTGGTCATGCT...CTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp CCAAATTCTGACTGCGCAGATGGGGCAAGCAGGGCAGGGCTATCGTCCCGAGCCTTGAGCAGAAAGAAGTaGTTCTGGGTGCGGAGGCTC +
Preference number: 5 (lower is better)
Translates to: PNSDCADGASRAGLSSRALSRKK*FWVRRL
Trigger: GAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAA...GGCTCGGGACGATAGCCCTGCCCTGCTTGCCCCATCTGCGCAGTCAGAATTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp CGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCAGGTGTGTGACCACCAGCCACAGCTaGCAGAGGCCCCGGCCAAAG +
Preference number: 5 (lower is better)
Translates to: RLGREKVLQVCGGSGRCVTTSHS*QRPRPK
Trigger: CTTTGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGT...CACACACCTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp TGGGAGCCCACACCTGCCAATCCAGCCCCGAGCTCCTCGGCAATTTTGTCTCTCGCGCTGGGTGATGCTTaGGGATACCATCTTCATGCG +
Preference number: 5 (lower is better)
Translates to: WEPTPANPAPSSSAILSLALGDA*GYHLHA
Trigger: CGCATGAAGATGGTATCCCAAAGCATCACCCAGCGC...GAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp CCCAGATCGTCTTGGGAGAGAGAAGGTATTGCAAGTGTGTGGTGGAAGTGGCAGTGGGGGCAGAGGAGCTaGGTGAAGGCTCTACGGAAG +
Preference number: 5 (lower is better)
Translates to: PRSSWEREGIASVWWKWQWGQRS*VKALRK
Trigger: CTTCCGTAGAGCCTTCACCAAGCTCCTCTGCCCCCA...CTGCCACTTCCACCACACACTTGCAATACCTTCTCTCTCCCAAGACGATCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS-3UTR CAA 90 bp TTAGGGAGGACACCAACCACTAAGTATGCAAAGGAGGACATCACTGGCACTGCACTGATCAGCACGATGTaGAAGACTGAGGAGGCACAC +
Preference number: 5 (lower is better)
Translates to: LGRTPTTKYAKEDITGTALISTM*KTEEAH
Trigger: GTGTGCCTCCTCAGTCTTCAACATCGTGCTGATCAG...TGCAGTGCCAGTGATGTCCTCCTTTGCATACTTAGTGGTTGGTGTCCTCCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056480.10
CDS GCA 72 bp AGGCACACAGTAGGTAGTCTACCACCAGCCACAGCTTaGAGAGGCCCCGGCCAAAGGTCCAACGGCCGGTCA +
Preference number: 6 (lower is better)
Translates to: RHTVGSLPPATA*RGPGQRSNGRS
Trigger: TGACCGGCCGTTGGACCTTTGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056480.10
ENSMUST00000163215.8
ENSMUST00000164442.2
ENSMUST00000165248.8
ENSMUST00000165762.8
ENSMUST00000171736.8
CDS CAA 90 bp TCCATCTTCTTCCAGCACTGCTCCAGGGAGCCATGGGGCTGGACCTaGAGCTTCTGGGGGCAGAGGAGCTTGGTGAAGGCTCTACGGAAG +
Preference number: 6 (lower is better)
Translates to: SIFFQHCSREPWGWT*SFWGQRSLVKALRK
Trigger: CTTCCGTAGAGCCTTCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCATGGCTCCCTGGAGCAGTGCTGGAAGAAGATGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165248.8
ENSMUST00000165762.8
CDS CCA 72 bp TCGGAGATGGCGAGGTTGAGCAGAAAGAAGTTGTTCTaGGTGCGGAGGCTCGAATCCGCCACGAAGGCGAGC +
Preference number: 6 (lower is better)
Translates to: SEMARLSRKKLF*VRRLESATKAS
Trigger: GCTCGCCTTCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056480.10
ENSMUST00000163215.8
ENSMUST00000164442.2
ENSMUST00000165248.8
ENSMUST00000165762.8
ENSMUST00000166724.2
ENSMUST00000171736.8
CDS CAA 90 bp ATACAATGGGATGCAGAAGGCACGAGGAAGTCGGAGATGGCGAGGTaGAGCAGAAAGAAGTTGTTCTGGGTGCGGAGGCTCGAATCCGCC +
Preference number: 6 (lower is better)
Translates to: IQWDAEGTRKSEMAR*SRKKLFWVRRLESA
Trigger: GGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGACTTCCTCGTGCCTTCTGCATCCCATTGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166724.2