RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HRG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022877

Ensembl transcript IDs: ENSMUST00000023590.9, ENSMUST00000232422.2

Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GGAAGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACCCGCTCTGTCCAAGTaGGCGTCAGAGACCCGCAGC +
Preference number: 4 (lower is better)
Translates to: GRAVGALNLWAISSALFPPALSK*ASETRS
Trigger: GCTGCGGGTCTCTGACGCCCACTTGGACAGAGCGGG...TGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS-3UTR TCA 90 bp GGAAGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACTGCCCGTTCCACTCTaGAAGAGGCAAAGTCACCAT +
Preference number: 4 (lower is better)
Translates to: GRAVGALNLWAISSALFPLPVPL*KRQSHH
Trigger: ATGGTGACTTTGCCTCTTTCAGAGTGGAACGGGCAG...TGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS-3UTR GCA 90 bp AGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACTGAGGGCATGGGAACACTaGAGGGTGACTAGAAGCAAT +
Preference number: 4 (lower is better)
Translates to: RAVGALNLWAISSALFPLRAWEH*RVTRSN
Trigger: ATTGCTTCTAGTCACCCTGCAGTGTTCCCATGCCCT...CAGTGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS-3UTR CCA 90 bp GGAAGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCAGGAAGACAGTCATCCTaGGCTTTTGTGGAAAGGACC +
Preference number: 4 (lower is better)
Translates to: GRAVGALNLWAISSALFPGRQSS*AFVERT
Trigger: GGTCCTTTCCACAAAAGCCCAGGATGACTGTCTTCC...TGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS-3UTR TCA 90 bp GGAAGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCATCCTCCGCCCTTTATTaGTCAGGTCTAGAACTTTCT +
Preference number: 4 (lower is better)
Translates to: GRAVGALNLWAISSALFPSSALY*SGLELS
Trigger: AGAAAGTTCTAGACCTGATCAATAAAGGGCGGAGGA...TGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS-3UTR CCA 90 bp AGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACTGAAGAGACAGAACTTGTaGTGCAGTTATAGCCATTCA +
Preference number: 4 (lower is better)
Translates to: RAVGALNLWAISSALFPLKRQNL*CSYSHS
Trigger: TGAATGGCTATAACTGCACCACAAGTTCTGTCTCTT...CAGTGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS CCA 90 bp TCAGCCAGAGGCTCAGAAGCATCACAGTTGGTGGGACTCAGGGCATaGGAACACTGCAGGGTGACTAGAAGCAATGCTGTGGTGAGCACC +
Preference number: 5 (lower is better)
Translates to: SARGSEASQLVGLRA*EHCRVTRSNAVVST
Trigger: GGTGCTCACCACAGCATTGCTTCTAGTCACCCTGCAGTGTTCCCATGCCCTGAGTCCCACCAACTGTGATGCTTCTGAGCCTCTGGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS-3UTR CAA 90 bp AGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACTGTCAGAAGCATCACAGTaGGTGGGACTCAGGGCATGG +
Preference number: 5 (lower is better)
Translates to: RAVGALNLWAISSALFPLSEASQ*VGLRAW
Trigger: CCATGCCCTGAGTCCCACCAACTGTGATGCTTCTGA...CAGTGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS GCA 90 bp GGCTCAGAAGCATCACAGTTGGTGGGACTCAGGGCATGGGAACACTaGAGGGTGACTAGAAGCAATGCTGTGGTGAGCACCTTCATTGTG +
Preference number: 5 (lower is better)
Translates to: GSEASQLVGLRAWEH*RVTRSNAVVSTFIV
Trigger: CACAATGAAGGTGCTCACCACAGCATTGCTTCTAGTCACCCTGCAGTGTTCCCATGCCCTGAGTCCCACCAACTGTGATGCTTCTGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS CCA 90 bp CCCAACAGTCAGACTCTATCACATCTAAAGCTAAGTAGTAGACTGTaGCCGTTCCCGCTCTGTCCAAGTGGGCGTCAGAGACCCGCAGCA +
Preference number: 5 (lower is better)
Translates to: PNSQTLSHLKLSSRL*PFPLCPSGRQRPAA
Trigger: TGCTGCGGGTCTCTGACGCCCACTTGGACAGAGCGGGAACGGCCACAGTCTACTACTTAGCTTTAGATGTGATAGAGTCTGACTGTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS-3UTR CAA 90 bp AGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACTGCTCCTCCGCCCTTTATaGATCAGGTCTAGAACTTTC +
Preference number: 5 (lower is better)
Translates to: RAVGALNLWAISSALFPLLLRPL*IRSRTF
Trigger: GAAAGTTCTAGACCTGATCAATAAAGGGCGGAGGAG...CAGTGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS TCA 90 bp AGACCCGCAGCAGCTCGAAAACATAGCCACTCCTCCGCCCTTTATTaGTCAGGTCTAGAACTTTCTCAGCCAGAGGCTCAGAAGCATCAC +
Preference number: 5 (lower is better)
Translates to: RPAAARKHSHSSALY*SGLELSQPEAQKHH
Trigger: GTGATGCTTCTGAGCCTCTGGCTGAGAAAGTTCTAGACCTGATCAATAAAGGGCGGAGGAGTGGCTATGTTTTCGAGCTGCTGCGGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS TCA 90 bp TTGAGTGTCCATGTGGTGGACCATAGCCCCGATGATACTGACCTTTaGGTTCTTGACTATTGGAGGGCGGGTCACAAGGTCCATAGTCAA +
Preference number: 5 (lower is better)
Translates to: LSVHVVDHSPDDTDL*VLDYWRAGHKVHSQ
Trigger: TTGACTATGGACCTTGTGACCCGCCCTCCAATAGTCAAGAACTCAAAGGTCAGTATCATCGGGGCTATGGTCCACCACATGGACACTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS-3UTR CAA 90 bp AGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACTGGGCTATTACCTTACATaGTCCAATCACTATTTCAGA +
Preference number: 5 (lower is better)
Translates to: RAVGALNLWAISSALFPLGYYLT*SNHYFR
Trigger: TCTGAAATAGTGATTGGACAATGTAAGGTAATAGCC...CAGTGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS-3UTR CAA 90 bp AGAGCAGTCGGTGCTCTTAACCTGTGGGCCATCTCCTCAGCTCTGTTCCCACTGGATCTTGAGACTCATTaGAGTATCTTGTGGCTATTA +
Preference number: 5 (lower is better)
Translates to: RAVGALNLWAISSALFPLDLETH*SILWLL
Trigger: TAATAGCCACAAGATACTCAAATGAGTCTCAAGATC...CAGTGGGAACAGAGCTGAGGAGATGGCCCACAGGTTAAGAGCACCGACTGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232422.2
CDS TCA 90 bp CAAGTTTATCTGTCTTATGGGTATGATGATGATCCCTGGATCCACTaGGCTTACACAGATGTTTGTCACAAAGAGGACGCTCATGGCCCC +
Preference number: 5 (lower is better)
Translates to: QVYLSYGYDDDPWIH*AYTDVCHKEDAHGP
Trigger: GGGGCCATGAGCGTCCTCTTTGTGACAAACATCTGTGTAAGCTCAGTGGATCCAGGGATCATCATCATACCCATAAGACAGATAAACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS GCA 90 bp ATAGTAATTGGTTCTTTCCCCTCCTCTCGCTCTTATAACCCGTTCTaGCCGTTCCACTCTGAAAGAGGCAAAGTCACCATTATCCGTTTT +
Preference number: 5 (lower is better)
Translates to: IVIGSFPSSRSYNPF*PFHSERGKVTIIRF
Trigger: AAAACGGATAATGGTGACTTTGCCTCTTTCAGAGTGGAACGGGCAGAACGGGTTATAAGAGCGAGAGGAGGGGAAAGAACCAATTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CCA 90 bp TATTACCTTACATTGTCCAATCACTATTTCAGATTGCCACCTCGATaGAAGACAGTCATCCTGGGCTTTTGTGGAAAGGACCCAACAGTC +
Preference number: 5 (lower is better)
Translates to: YYLTLSNHYFRLPPR*KTVILGFCGKDPTV
Trigger: GACTGTTGGGTCCTTTCCACAAAAGCCCAGGATGACTGTCTTCCATCGAGGTGGCAATCTGAAATAGTGATTGGACAATGTAAGGTAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS TCA 90 bp CCCAATGGGGTTTCATGTCACTTGTGTCTTTATGATCCTCAATGTTaGAGACTTCGCAGTTTATATCAATGGAATCTGGGGTTTCCAAGT +
Preference number: 5 (lower is better)
Translates to: PNGVSCHLCLYDPQC*RLRSLYQWNLGFPS
Trigger: ACTTGGAAACCCCAGATTCCATTGATATAAACTGCGAAGTCTTCAACATTGAGGATCATAAAGACACAAGTGACATGAAACCCCATTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CCA 72 bp GGCTCAGAAGCATCACAGTTGGTGGGACTCAGGGCATaGGAACACTGCAGGGTGACTAGAAGCAATGCTGTG +
Preference number: 6 (lower is better)
Translates to: GSEASQLVGLRA*EHCRVTRSNAV
Trigger: CACAGCATTGCTTCTAGTCACCCTGCAGTGTTCCCATGCCCTGAGTCCCACCAACTGTGATGCTTCTGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS TCA 72 bp TTGTGGAAGGGCTCCTTCTTGAAGGCGTGGTCTGTCTaGGTTATCTTTTCCTTCTGGTGGAGGTGGGCATCC +
Preference number: 6 (lower is better)
Translates to: LWKGSFLKAWSV*VIFSFWWRWAS
Trigger: GGATGCCCACCTCCACCAGAAGGAAAAGATAACTCAGACAGACCACGCCTTCAAGAAGGAGCCCTTCCACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CAA 90 bp TCCATGTGGTGGACCATAGCCCCGATGATACTGACCTTTGAGTTCTaGACTATTGGAGGGCGGGTCACAAGGTCCATAGTCAAGGAAGTC +
Preference number: 6 (lower is better)
Translates to: SMWWTIAPMILTFEF*TIGGRVTRSIVKEV
Trigger: GACTTCCTTGACTATGGACCTTGTGACCCGCCCTCCAATAGTCAAGAACTCAAAGGTCAGTATCATCGGGGCTATGGTCCACCACATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS TCA 72 bp GCAGCTCGAAAACATAGCCACTCCTCCGCCCTTTATTaGTCAGGTCTAGAACTTTCTCAGCCAGAGGCTCAG +
Preference number: 6 (lower is better)
Translates to: AARKHSHSSALY*SGLELSQPEAQ
Trigger: CTGAGCCTCTGGCTGAGAAAGTTCTAGACCTGATCAATAAAGGGCGGAGGAGTGGCTATGTTTTCGAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS GCA 72 bp GGTTCTTTCCCCTCCTCTCGCTCTTATAACCCGTTCTaGCCGTTCCACTCTGAAAGAGGCAAAGTCACCATT +
Preference number: 6 (lower is better)
Translates to: GSFPSSRSYNPF*PFHSERGKVTI
Trigger: AATGGTGACTTTGCCTCTTTCAGAGTGGAACGGGCAGAACGGGTTATAAGAGCGAGAGGAGGGGAAAGAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS GCA 72 bp CTGCAGAATCCAAAGACCAGAGGGGACCTGGGGAAATaGTGTGTGGAACAGTTCCTCATGGAGAATTCCACA +
Preference number: 6 (lower is better)
Translates to: LQNPKTRGDLGK*CVEQFLMENST
Trigger: TGTGGAATTCTCCATGAGGAACTGTTCCACACAGCATTTCCCCAGGTCCCCTCTGGTCTTTGGATTCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CCA 72 bp AAAGTGCTCTGCAGAATCCAAAGACCAGAGGGGACCTaGGGAAATGCTGTGTGGAACAGTTCCTCATGGAGA +
Preference number: 6 (lower is better)
Translates to: KVLCRIQRPEGT*GNAVWNSSSWR
Trigger: TCTCCATGAGGAACTGTTCCACACAGCATTTCCCCAGGTCCCCTCTGGTCTTTGGATTCTGCAGAGCACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CAA 72 bp TGGACCATAGCCCCGATGATACTGACCTTTGAGTTCTaGACTATTGGAGGGCGGGTCACAAGGTCCATAGTC +
Preference number: 6 (lower is better)
Translates to: WTIAPMILTFEF*TIGGRVTRSIV
Trigger: GACTATGGACCTTGTGACCCGCCCTCCAATAGTCAAGAACTCAAAGGTCAGTATCATCGGGGCTATGGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS GCA 72 bp GAGGGAAGGGCTGAATCTCTGGTTGTAGGGATCTGTTaGAATTTGGCAAAGAGAAGCTGGGGAAATTGGCTT +
Preference number: 6 (lower is better)
Translates to: EGRAESLVVGIC*NLAKRSWGNWL
Trigger: AAGCCAATTTCCCCAGCTTCTCTTTGCCAAATTGCAACAGATCCCTACAACCAGAGATTCAGCCCTTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CAA 72 bp TCCACTCTGAAAGAGGCAAAGTCACCATTATCCGTTTaGTACTTGTCCAGGGCTTTACGGGCTTGCTTTCTG +
Preference number: 6 (lower is better)
Translates to: STLKEAKSPLSV*YLSRALRACFL
Trigger: CAGAAAGCAAGCCCGTAAAGCCCTGGACAAGTACAAAACGGATAATGGTGACTTTGCCTCTTTCAGAGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023590.9
ENSMUST00000232422.2
CDS TCA 72 bp CTGTCTTATGGGTATGATGATGATCCCTGGATCCACTaGGCTTACACAGATGTTTGTCACAAAGAGGACGCT +
Preference number: 6 (lower is better)
Translates to: LSYGYDDDPWIH*AYTDVCHKEDA
Trigger: AGCGTCCTCTTTGTGACAAACATCTGTGTAAGCTCAGTGGATCCAGGGATCATCATCATACCCATAAGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CCA 72 bp AGCTTACACAGATGTTTGTCACAAAGAGGACGCTCATaGCCCCAATGGGGTTTCATGTCACTTGTGTCTTTA +
Preference number: 6 (lower is better)
Translates to: SLHRCLSQRGRS*PQWGFMSLVSL
Trigger: TAAAGACACAAGTGACATGAAACCCCATTGGGGCCATGAGCGTCCTCTTTGTGACAAACATCTGTGTAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CCA 72 bp GGCTTCAGGAAGAGTGAGAACTTCACCTATATTCAGTaGAGGGAGTCGGTAGACATATCCAATTTGTTGGTG +
Preference number: 6 (lower is better)
Translates to: GFRKSENFTYIQ*RESVDISNLLV
Trigger: CACCAACAAATTGGATATGTCTACCGACTCCCTCCACTGAATATAGGTGAAGTTCTCACTCTTCCTGAAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CAA 90 bp TTCACCTATATTCAGTGGAGGGAGTCGGTAGACATATCCAATTTGTaGGTGGTGGAAAGGAAAGAGTCCTTTGCCTGGACCTCTTTTTCT +
Preference number: 6 (lower is better)
Translates to: FTYIQWRESVDISNL*VVERKESFAWTSFS
Trigger: AGAAAAAGAGGTCCAGGCAAAGGACTCTTTCCTTTCCACCACCAACAAATTGGATATGTCTACCGACTCCCTCCACTGAATATAGGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS TCA 72 bp TGGCCCCAATGGGGTTTCATGTCACTTGTGTCTTTATaGTCCTCAATGTTGAAGACTTCGCAGTTTATATCA +
Preference number: 6 (lower is better)
Translates to: WPQWGFMSLVSL*SSMLKTSQFIS
Trigger: TGATATAAACTGCGAAGTCTTCAACATTGAGGATCATAAAGACACAAGTGACATGAAACCCCATTGGGGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS TCA 72 bp GTTTCATGTCACTTGTGTCTTTATGATCCTCAATGTTaGAGACTTCGCAGTTTATATCAATGGAATCTGGGG +
Preference number: 6 (lower is better)
Translates to: VSCHLCLYDPQC*RLRSLYQWNLG
Trigger: CCCCAGATTCCATTGATATAAACTGCGAAGTCTTCAACATTGAGGATCATAAAGACACAAGTGACATGAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9
CDS CCA 72 bp AATGTTGAAGACTTCGCAGTTTATATCAATGGAATCTaGGGTTTCCAAGTCAGAGGTTTCTATACTGTAGGA +
Preference number: 6 (lower is better)
Translates to: NVEDFAVYINGI*GFQVRGFYTVG
Trigger: TCCTACAGTATAGAAACCTCTGACTTGGAAACCCCAGATTCCATTGATATAAACTGCGAAGTCTTCAACATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023590.9