Pregenerated sensors for HRCT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071001Ensembl transcript IDs: ENSMUST00000095109.5
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCAGAGTCTGCATAAGAATCCCTATTCAGTCCCCAAACAGACACTaGACCCAGGGTTGGTTCCTGCTCTGGACCAGGCTAGGAGGAGCA | + |
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Preference number: 1 (lower is better) Translates to: LRVCIRIPIQSPNRH*TQGWFLLWTRLGGA Trigger: TGCTCCTCCTAGCCTGGTCCAGAGCAGGAACCAACCCTGGGTTCAGTGTCTGTTTGGGGACTGAATAGGGATTCTTATGCAGACTCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR TCA 90 bp | ATTTTAAGGAAGGAAAAACTGAGGCTCAGGCCAGGCACATTCTCTTaGGGCCACCCGGCATGCCAAGCAGTTAACTGTTCCCTCCCTCTG | + |
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Preference number: 1 (lower is better) Translates to: ILRKEKLRLRPGTFS*GHPACQAVNCSLPL Trigger: CAGAGGGAGGGAACAGTTAACTGCTTGGCATGCCGGGTGGCCTCAAGAGAATGTGCCTGGCCTGAGCCTCAGTTTTTCCTTCCTTAAAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR GCA 90 bp | TTTATTTCTTACAGCCAAGCAGCAGTGAATGCCCGTACCACAGTCTaGCCCTGGAAGCTCATCACAGGGCCTCCCCAATCAGAAGAACTC | + |
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Preference number: 1 (lower is better) Translates to: FISYSQAAVNARTTV*PWKLITGPPQSEEL Trigger: GAGTTCTTCTGATTGGGGAGGCCCTGTGATGAGCTTCCAGGGGCAGACTGTGGTACGGGCATTCACTGCTGCTTGGCTGTAAGAAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR GCA 90 bp | TTAACTGTTCCCTCCCTCTGGTCTTATCAGCTGCTACTGTGCATCTaGAGACAGGCTGGCTGGAGACTCAGAGTCTGCATAAGAATCCCT | + |
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Preference number: 1 (lower is better) Translates to: LTVPSLWSYQLLLCI*RQAGWRLRVCIRIP Trigger: AGGGATTCTTATGCAGACTCTGAGTCTCCAGCCAGCCTGTCTGCAGATGCACAGTAGCAGCTGATAAGACCAGAGGGAGGGAACAGTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR TCA 90 bp | GACCCCAGGCTCAGCTCCTTCCAGAAGAGTTCCCAGGGCCCTCATGACTCCCTCGGGCTCATATGCAAATaGAACCCAAGCAGGACCAGG | + |
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Preference number: 2 (lower is better) Translates to: DPRLSSFQKSSQGPHDSLGLICK*NPSRTR Trigger: CCTGGTCCTGCTTGGGTTTCATTTGCATATGAGCCC...GAGGGAGTCATGAGGGCCCTGGGAACTCTTCTGGAAGGAGCTGAGCCTGGGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR CCA 90 bp | CAGACAGGCTGGCTGGAGACTCAGAGTCTGCATAAGAATCCCTATTCAGTCCCCCACTCATGTTGCTGCTaGATGGAGGGCAGAGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: QTGWLETQSLHKNPYSVPHSCCC*MEGRAR Trigger: CCTGGCTCTGCCCTCCATCCAGCAGCAACATGAGTG...GGGGACTGAATAGGGATTCTTATGCAGACTCTGAGTCTCCAGCCAGCCTGTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CAA 90 bp | CCAGAGGCACATCCTTTTCCGTGGCAGCATCAGGATCCACTCATGTaGCTGCTGGATGGAGGGCAGAGCCAGGTAGATGCTATCTATTGG | + |
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Preference number: 2 (lower is better) Translates to: PEAHPFPWQHQDPLM*LLDGGQSQVDAIYW Trigger: CCAATAGATAGCATCTACCTGGCTCTGCCCTCCATCCAGCAGCAACATGAGTGGATCCTGATGCTGCCACGGAAAAGGATGTGCCTCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR GCA 90 bp | AGAAGAACTCTCCATCTCCACCTGGGCTCTGGTTCTGCCAGATACCCTTGTTACATCCACTCATGTTGCTaGTGGATGGAGGGCAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: RRTLHLHLGSGSARYPCYIHSCC*WMEGRA Trigger: GGCTCTGCCCTCCATCCAGCAGCAACATGAGTGGAT...GTAACAAGGGTATCTGGCAGAACCAGAGCCCAGGTGGAGATGGAGAGTTCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR CCA 90 bp | CTGAATTCTTCCTCAGAGCTTAGGCGGGGACCACCTACTTCTCTCTGTTCCAGACATGTTGCTGCTGGATaGAGGGCAGAGCCAGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: LNSSSELRRGPPTSLCSRHVAAG*RAEPGR Trigger: TCTACCTGGCTCTGCCCTCCATCCAGCAGCAACATG...TCTGGAACAGAGAGAAGTAGGTGGTCCCCGCCTAAGCTCTGAGGAAGAATTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR GCA 90 bp | CTGAATTCTTCCTCAGAGCTTAGGCGGGGACCACCTACTTCTCTCTGTTCCAGAAGGATCCACTCATGTTaGTGCTGGATGGAGGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: LNSSSELRRGPPTSLCSRRIHSC*CWMEGR Trigger: TCTGCCCTCCATCCAGCAGCAACATGAGTGGATCCT...TCTGGAACAGAGAGAAGTAGGTGGTCCCCGCCTAAGCTCTGAGGAAGAATTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR CCA 90 bp | ATGCCTGTTGACTGTGGTAGGAGTCTCTACTATCCATTCCATTTTAAGGAAGGAGGTTGGTTCCTGCTCTaGACCAGGCTAGGAGGAGCA | + |
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Preference number: 2 (lower is better) Translates to: MPVDCGRSLYYPFHFKEGGWFLL*TRLGGA Trigger: TGCTCCTCCTAGCCTGGTCCAGAGCAGGAACCAACC...TCCTTCCTTAAAATGGAATGGATAGTAGAGACTCCTACCACAGTCAACAGGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR CCA 90 bp | ATGCCTGTTGACTGTGGTAGGAGTCTCTACTATCCATTCCATTTTAAGGAAGGATCTCCACCTGGGCTCTaGTTCTGCCAGATACCCTTG | + |
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Preference number: 2 (lower is better) Translates to: MPVDCGRSLYYPFHFKEGSPPGL*FCQIPL Trigger: CAAGGGTATCTGGCAGAACCAGAGCCCAGGTGGAGA...TCCTTCCTTAAAATGGAATGGATAGTAGAGACTCCTACCACAGTCAACAGGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CAA 90 bp | ACCCAACCTTTTATTCATAGTGTGTGTGGGTCCTTTGCATGCCTGTaGACTGTGGTAGGAGTCTCTACTATCCATTCCATTTTAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: TQPFIHSVCGSFACL*TVVGVSTIHSILRK Trigger: CTTCCTTAAAATGGAATGGATAGTAGAGACTCCTACCACAGTCAACAGGCATGCAAAGGACCCACACACACTATGAATAAAAGGTTGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR GCA 72 bp | TACAGCCAAGCAGCAGTGAATGCCCGTACCACAGTCTaGCCCTGGAAGCTCATCACAGGGCCTCCCCAATCA | + |
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Preference number: 3 (lower is better) Translates to: YSQAAVNARTTV*PWKLITGPPQS Trigger: TGATTGGGGAGGCCCTGTGATGAGCTTCCAGGGGCAGACTGTGGTACGGGCATTCACTGCTGCTTGGCTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CCA 72 bp | CAAGCAGCAGTGAATGCCCGTACCACAGTCTGCCCCTaGAAGCTCATCACAGGGCCTCCCCAATCAGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: QAAVNARTTVCP*KLITGPPQSEE Trigger: TTCTTCTGATTGGGGAGGCCCTGTGATGAGCTTCCAGGGGCAGACTGTGGTACGGGCATTCACTGCTGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR CAA 90 bp | AGAAGAACTCTCCATCTCCACCTGGGCTCTGGTTCTGCCAGATACCCTTGTTACCAGGATCCACTCATGTaGCTGCTGGATGGAGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: RRTLHLHLGSGSARYPCYQDPLM*LLDGGQ Trigger: CTGCCCTCCATCCAGCAGCAACATGAGTGGATCCTG...GTAACAAGGGTATCTGGCAGAACCAGAGCCCAGGTGGAGATGGAGAGTTCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR TCA 72 bp | AAGGAAAAACTGAGGCTCAGGCCAGGCACATTCTCTTaGGGCCACCCGGCATGCCAAGCAGTTAACTGTTCC | + |
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Preference number: 3 (lower is better) Translates to: KEKLRLRPGTFS*GHPACQAVNCS Trigger: GGAACAGTTAACTGCTTGGCATGCCGGGTGGCCTCAAGAGAATGTGCCTGGCCTGAGCCTCAGTTTTTCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR GCA 72 bp | CAGAAGAACTCTCCATCTCCACCTGGGCTCTGGTTCTaGCAGATACCCTTGTTACTTCCAGGGTCACCAGGA | + |
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Preference number: 3 (lower is better) Translates to: QKNSPSPPGLWF*QIPLLLPGSPG Trigger: TCCTGGTGACCCTGGAAGTAACAAGGGTATCTGGCAGAACCAGAGCCCAGGTGGAGATGGAGAGTTCTTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CCA 72 bp | CCCAATCAGAAGAACTCTCCATCTCCACCTGGGCTCTaGTTCTGCCAGATACCCTTGTTACTTCCAGGGTCA | + |
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Preference number: 3 (lower is better) Translates to: PNQKNSPSPPGL*FCQIPLLLPGS Trigger: TGACCCTGGAAGTAACAAGGGTATCTGGCAGAACCAGAGCCCAGGTGGAGATGGAGAGTTCTTCTGATTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR TCA 72 bp | TGCATAAGAATCCCTATTCAGTCCCCAAACAGACACTaGACCCAGGGTTGGTTCCTGCTCTGGACCAGGCTA | + |
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Preference number: 3 (lower is better) Translates to: CIRIPIQSPNRH*TQGWFLLWTRL Trigger: TAGCCTGGTCCAGAGCAGGAACCAACCCTGGGTTCAGTGTCTGTTTGGGGACTGAATAGGGATTCTTATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR GCA 72 bp | TGCATCTGCAGACAGGCTGGCTGGAGACTCAGAGTCTaGATAAGAATCCCTATTCAGTCCCCAAACAGACAC | + |
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Preference number: 3 (lower is better) Translates to: CICRQAGWRLRV*IRIPIQSPNRH Trigger: GTGTCTGTTTGGGGACTGAATAGGGATTCTTATGCAGACTCTGAGTCTCCAGCCAGCCTGTCTGCAGATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CCA 72 bp | TATCAGCTGCTACTGTGCATCTGCAGACAGGCTGGCTaGAGACTCAGAGTCTGCATAAGAATCCCTATTCAG | + |
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Preference number: 3 (lower is better) Translates to: YQLLLCICRQAG*RLRVCIRIPIQ Trigger: CTGAATAGGGATTCTTATGCAGACTCTGAGTCTCCAGCCAGCCTGTCTGCAGATGCACAGTAGCAGCTGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CCA 72 bp | GTCTTATCAGCTGCTACTGTGCATCTGCAGACAGGCTaGCTGGAGACTCAGAGTCTGCATAAGAATCCCTAT | + |
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Preference number: 3 (lower is better) Translates to: VLSAATVHLQTG*LETQSLHKNPY Trigger: ATAGGGATTCTTATGCAGACTCTGAGTCTCCAGCCAGCCTGTCTGCAGATGCACAGTAGCAGCTGATAAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR-3UTR CAA 90 bp | CAAGAACCAGTTCACACAAAAAGCTTCCTGGTGGCTTTTATTTCTTACAGCCAACCAGGTGGGTCTCTGTaGCACATAGGGAGAAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: QEPVHTKSFLVAFISYSQPGGSL*HIGRRA Trigger: AGCCCTTCTCCCTATGTGCAACAGAGACCCACCTGG...TTGGCTGTAAGAAATAAAAGCCACCAGGAAGCTTTTTGTGTGAACTGGTTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR GCA 72 bp | CAACCTTTTATTCATAGTGTGTGTGGGTCCTTTGCATaGCTGTTGACTGTGGTAGGAGTCTCTACTATCCAT | + |
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Preference number: 3 (lower is better) Translates to: QPFIHSVCGSFA*LLTVVGVSTIH Trigger: ATGGATAGTAGAGACTCCTACCACAGTCAACAGGCATGCAAAGGACCCACACACACTATGAATAAAAGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS-3UTR CCA 90 bp | CTCTGGACCAGGCTAGGAGGAGCACTCAGGCAGGGTGCTCCGAGAGCTAGAACCCGGTGGTGGTGCTTGTaGTGGTGGAGACGATGGGGA | + |
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Preference number: 4 (lower is better) Translates to: LWTRLGGALRQGAPRARTRWWCL*WWRRWG Trigger: TCCCCATCGTCTCCACCACCACAAGCACCACCACCG...GGTTCTAGCTCTCGGAGCACCCTGCCTGAGTGCTCCTCCTAGCCTGGTCCAGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CAA 72 bp | AACTCAGCCAGCCCTGCTCGAAGCTCAAGCCCCACATaGTGTAGAGGGCCACCCAGGTGGGTCTCTGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: NSASPARSSSPT*CRGPPRWVSVA Trigger: TGCAACAGAGACCCACCTGGGTGGCCCTCTACACAATGTGGGGCTTGAGCTTCGAGCAGGGCTGGCTGAGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS-3UTR GCA 90 bp | GACCCCAGGCTCAGCTCCTTCCAGAAGAGTTCCCAGGGCCCTCATGACTCCCTCTTTCTCTCCACGTCATaGTCCTGTGATCTGTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: DPRLSSFQKSSQGPHDSLFLSTS*SCDLWK Trigger: TTTCCACAGATCACAGGAGCATGACGTGGAGAGAAA...GAGGGAGTCATGAGGGCCCTGGGAACTCTTCTGGAAGGAGCTGAGCCTGGGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS-3UTR CCA 90 bp | GACTCCCTCCCTCCCACTGTGCCACAGTCAAGAACCAGTTCACACAAAAAGCTTGGTGAACGCCCACACTaGTCACCCCGGTCACATGGT | + |
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Preference number: 4 (lower is better) Translates to: DSLPPTVPQSRTSSHKKLGERPH*SPRSHG Trigger: ACCATGTGACCGGGGTGACCAGTGTGGGCGTTCACC...AAGCTTTTTGTGTGAACTGGTTCTTGACTGTGGCACAGTGGGAGGGAGGGAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CAA 72 bp | CCATCTCCACCTGGGCTCTGGTTCTGCCAGATACCCTaGTTACTTCCAGGGTCACCAGGAGTTGCAGTCACA | + |
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Preference number: 4 (lower is better) Translates to: PSPPGLWFCQIP*LLPGSPGVAVT Trigger: TGTGACTGCAACTCCTGGTGACCCTGGAAGTAACAAGGGTATCTGGCAGAACCAGAGCCCAGGTGGAGATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS-3UTR TCA 90 bp | ACCAGGAGTTGCAGTCACAAGGTAGGAAACTCAGCCAGCCCTGCTCGAAGCTCACACGTCATGCTCCTGTaGTCTGTGGAAAAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: TRSCSHKVGNSASPARSSHVMLL*SVEKAE Trigger: CTCTGCCTTTTCCACAGATCACAGGAGCATGACGTG...TGAGCTTCGAGCAGGGCTGGCTGAGTTTCCTACCTTGTGACTGCAACTCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS-3UTR CCA 90 bp | GACTCCCTCCCTCCCACTGTGCCACAGTCAAGAACCAGTTCACACAAAAAGCTTTGCTCCTGTGATCTGTaGAAAAGGCAGAGGGCCATC | + |
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Preference number: 4 (lower is better) Translates to: DSLPPTVPQSRTSSHKKLCSCDL*KRQRAI Trigger: GATGGCCCTCTGCCTTTTCCACAGATCACAGGAGCA...AAGCTTTTTGTGTGAACTGGTTCTTGACTGTGGCACAGTGGGAGGGAGGGAGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| 3UTR CAA 72 bp | TTTATTCATAGTGTGTGTGGGTCCTTTGCATGCCTGTaGACTGTGGTAGGAGTCTCTACTATCCATTCCATT | + |
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Preference number: 4 (lower is better) Translates to: FIHSVCGSFACL*TVVGVSTIHSI Trigger: AATGGAATGGATAGTAGAGACTCCTACCACAGTCAACAGGCATGCAAAGGACCCACACACACTATGAATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS CCA 90 bp | GGTCACCCCGGTCACATGGTGATGGTGGTGATGGTGAACAAGTCTTaGGAGACGCAGGCGCCGGCCATGGAAGAGTCGAGGCCGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: GHPGHMVMVVMVNKS*ETQAPAMEESRPGL Trigger: CAAGCCCGGCCTCGACTCTTCCATGGCCGGCGCCTGCGTCTCCCAAGACTTGTTCACCATCACCACCATCACCATGTGACCGGGGTGACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS GCA 90 bp | AAGAGTCGAGGCCGGGCTTGTCGGACTCGGTTTCTCTCCACGTCATaGTCCTGTGATCTGTGGAAAAGGCAGAGGGCCATCAGCCACAGC | + |
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Preference number: 5 (lower is better) Translates to: KSRGRACRTRFLSTS*SCDLWKRQRAISHS Trigger: GCTGTGGCTGATGGCCCTCTGCCTTTTCCACAGATCACAGGAGCATGACGTGGAGAGAAACCGAGTCCGACAAGCCCGGCCTCGACTCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS TCA 90 bp | AGGCCGGGCTTGTCGGACTCGGTTTCTCTCCACGTCATGCTCCTGTaGTCTGTGGAAAAGGCAGAGGGCCATCAGCCACAGCAACATCAA | + |
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Preference number: 5 (lower is better) Translates to: RPGLSDSVSLHVMLL*SVEKAEGHQPQQHQ Trigger: TTGATGTTGCTGTGGCTGATGGCCCTCTGCCTTTTCCACAGATCACAGGAGCATGACGTGGAGAGAAACCGAGTCCGACAAGCCCGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS CCA 90 bp | GCTTGTCGGACTCGGTTTCTCTCCACGTCATGCTCCTGTGATCTGTaGAAAAGGCAGAGGGCCATCAGCCACAGCAACATCAAAAACGCC | + |
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Preference number: 5 (lower is better) Translates to: ACRTRFLSTSCSCDL*KRQRAISHSNIKNA Trigger: GGCGTTTTTGATGTTGCTGTGGCTGATGGCCCTCTGCCTTTTCCACAGATCACAGGAGCATGACGTGGAGAGAAACCGAGTCCGACAAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS CAA 90 bp | TGGTCACCCCGGTCACATGGTGATGGTGGTGATGGTGAACAAGTCTaGGGAGACGCAGGCGCCGGCCATGGAAGAGTCGAGGCCGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: WSPRSHGDGGDGEQV*GDAGAGHGRVEAGL Trigger: AAGCCCGGCCTCGACTCTTCCATGGCCGGCGCCTGCGTCTCCCAAGACTTGTTCACCATCACCACCATCACCATGTGACCGGGGTGACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS GCA 72 bp | GGCCGGGCTTGTCGGACTCGGTTTCTCTCCACGTCATaGTCCTGTGATCTGTGGAAAAGGCAGAGGGCCATC | + |
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Preference number: 6 (lower is better) Translates to: GRACRTRFLSTS*SCDLWKRQRAI Trigger: GATGGCCCTCTGCCTTTTCCACAGATCACAGGAGCATGACGTGGAGAGAAACCGAGTCCGACAAGCCCGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS CCA 72 bp | GGGGAGAATGGTGATGGTGGTGGTGAACGCCCACACTaGTCACCCCGGTCACATGGTGATGGTGGTGATGGT | + |
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Preference number: 6 (lower is better) Translates to: GENGDGGGERPH*SPRSHGDGGDG Trigger: ACCATCACCACCATCACCATGTGACCGGGGTGACCAGTGTGGGCGTTCACCACCACCATCACCATTCTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS CAA 72 bp | CGGTCACATGGTGATGGTGGTGATGGTGAACAAGTCTaGGGAGACGCAGGCGCCGGCCATGGAAGAGTCGAG | + |
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Preference number: 6 (lower is better) Translates to: RSHGDGGDGEQV*GDAGAGHGRVE Trigger: CTCGACTCTTCCATGGCCGGCGCCTGCGTCTCCCAAGACTTGTTCACCATCACCACCATCACCATGTGACCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS TCA 72 bp | GCCACAGCAACATCAAAAACGCCAGTGCTGTGCCCGTaGTCCAGCACACAAGGGTCGTGTTCCCCAGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: ATATSKTPVLCP*SSTQGSCSPEG Trigger: GCCTTCTGGGGAACACGACCCTTGTGTGCTGGATCACGGGCACAGCACTGGCGTTTTTGATGTTGCTGTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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| CDS GCA 72 bp | GAGGGCCATCAGCCACAGCAACATCAAAAACGCCAGTaGTGTGCCCGTGATCCAGCACACAAGGGTCGTGTT | + |
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Preference number: 6 (lower is better) Translates to: EGHQPQQHQKRQ*CARDPAHKGRV Trigger: AACACGACCCTTGTGTGCTGGATCACGGGCACAGCACTGGCGTTTTTGATGTTGCTGTGGCTGATGGCCCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095109.5 |
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