RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HRC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038239

Ensembl transcript IDs: ENSMUST00000085351.7, ENSMUST00000211327.2

Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GCGGCCAGGTCAGGGCTCTGGAGTCTCCAACATGTCAGCCAGGGCTCTGGACAGATTCAAAGAAATAGATaGAGCTCTTGCCAGGCGGCC +
Preference number: 2 (lower is better)
Translates to: AARSGLWSLQHVSQGSGQIQRNR*SSCQAA
Trigger: GGCCGCCTGGCAAGAGCTGCATCTATTTCTTTGAAT...CTGTCCAGAGCCCTGGCTGACATGTTGGAGACTCCAGAGCCCTGACCTGGCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
3UTR CCA 72 bp AGATGCAGCTCTTGCCAGGCGGCCAGGTCAGGGCTCTaGAGTCTCCAACATGTCAGCCAGGGCTCTGGACAG +
Preference number: 3 (lower is better)
Translates to: RCSSCQAARSGL*SLQHVSQGSGQ
Trigger: CTGTCCAGAGCCCTGGCTGACATGTTGGAGACTCCAGAGCCCTGACCTGGCCGCCTGGCAAGAGCTGCATCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS-3UTR CCA 90 bp ACGGGTCCCTTGAACGGCATCATCTCCCGGCCCAGCCCCCACACACTTACTGATGCAGGATGGCCACTGTaGCCCAAAGGAGACAAGTGT +
Preference number: 4 (lower is better)
Translates to: TGPLNGIISRPSPHTLTDAGWPL*PKGDKC
Trigger: ACACTTGTCTCCTTTGGGCCACAGTGGCCATCCTGC...ATCAGTAAGTGTGTGGGGGCTGGGCCGGGAGATGATGCCGTTCAAGGGACCCGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS-3UTR CCA 90 bp AGGGCTCTGGACAGGAGAGCAGGAAGGTTAGTTAGTCAACGTGCAGCCACTGAGGCCCCTCTCAACTCCTaGGTCACCACTGGAGGGACC +
Preference number: 4 (lower is better)
Translates to: RALDRRAGRLVSQRAATEAPLNS*VTTGGT
Trigger: GGTCCCTCCAGTGGTGACCCAGGAGTTGAGAGGGGC...CTCAGTGGCTGCACGTTGACTAACTAACCTTCCTGCTCTCCTGTCCAGAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS-3UTR GCA 90 bp GGTCCCTTGAACGGCATCATCTCCCGGCCCAGCCCCCACACACTTACTGATACAGGACCCAGGGATGCCTaGATTGTTGTTCCAGTTGCC +
Preference number: 4 (lower is better)
Translates to: GPLNGIISRPSPHTLTDTGPRDA*IVVPVA
Trigger: GGCAACTGGAACAACAATGCAGGCATCCCTGGGTCC...TGTATCAGTAAGTGTGTGGGGGCTGGGCCGGGAGATGATGCCGTTCAAGGGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS-3UTR GCA 90 bp CTAAACGGGTCCCTTGAACGGCATCATCTCCCGGCCCAGCCCCCACACACTTACCTGAGGACCCAGGGATaGCTGCATTGTTGTTCCAGT +
Preference number: 4 (lower is better)
Translates to: LNGSLERHHLPAQPPHTYLRTQG*LHCCSS
Trigger: ACTGGAACAACAATGCAGGCATCCCTGGGTCCTCAG...GTAAGTGTGTGGGGGCTGGGCCGGGAGATGATGCCGTTCAAGGGACCCGTTTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS-3UTR GCA 90 bp AGTCAACGTGCAGCCACTGAGCCTGACCATGGAGTCCAGGCTGTCTCTTTAACTCAAAGGAGACAAGTGTaGAACCATGGCCCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: SQRAATEPDHGVQAVSLTQRRQV*NHGPWK
Trigger: CTTCCAGGGGCCATGGTTGCACACTTGTCTCCTTTG...AGTTAAAGAGACAGCCTGGACTCCATGGTCAGGCTCAGTGGCTGCACGTTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS-3UTR CAA 90 bp GCGGCCAGGTCAGGGCTCTGGAGTCTCCAACATGTCAGCCAGGGCTCTGGACAGGCATTGTTGTTCCAGTaGCCCAGGCCCAGACCGGCC +
Preference number: 5 (lower is better)
Translates to: AARSGLWSLQHVSQGSGQALLFQ*PRPRPA
Trigger: GGCCGGTCTGGGCCTGGGCAACTGGAACAACAATGC...CTGTCCAGAGCCCTGGCTGACATGTTGGAGACTCCAGAGCCCTGACCTGGCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS CCA 90 bp CGGCCCCTCTCAACTCCTGGGTCACCACTGGAGGGACCAGCAGGATaGCCACTGTGGCCCAAAGGAGACAAGTGTGCAACCATGGCCCCT +
Preference number: 5 (lower is better)
Translates to: RPLSTPGSPLEGPAG*PLWPKGDKCATMAP
Trigger: AGGGGCCATGGTTGCACACTTGTCTCCTTTGGGCCACAGTGGCCATCCTGCTGGTCCCTCCAGTGGTGACCCAGGAGTTGAGAGGGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS CCA 90 bp TTGTTGTTCCAGTTGCCCAGGCCCAGACCGGCCCCTCTCAACTCCTaGGTCACCACTGGAGGGACCAGCAGGATGGCCACTGTGGCCCAA +
Preference number: 5 (lower is better)
Translates to: LLFQLPRPRPAPLNS*VTTGGTSRMATVAQ
Trigger: TTGGGCCACAGTGGCCATCCTGCTGGTCCCTCCAGTGGTGACCCAGGAGTTGAGAGGGGCCGGTCTGGGCCTGGGCAACTGGAACAACAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS GCA 90 bp ATAGGTCCTCTGAGGACCCAGGGATGCCTGCATTGTTGTTCCAGTTaGCCAGGCCCAGACCGGCCCCTCTCAACTCCTGGGTCACCACTG +
Preference number: 5 (lower is better)
Translates to: IGPLRTQGCLHCCSS*PGPDRPLSTPGSPL
Trigger: CAGTGGTGACCCAGGAGTTGAGAGGGGCCGGTCTGGGCCTGGGCAACTGGAACAACAATGCAGGCATCCCTGGGTCCTCAGAGGACCTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS CCA 90 bp TCAACTCCTGGGTCACCACTGGAGGGACCAGCAGGATGGCCACTGTaGCCCAAAGGAGACAAGTGTGCAACCATGGCCCCTGGAAGCCCA +
Preference number: 5 (lower is better)
Translates to: STPGSPLEGPAGWPL*PKGDKCATMAPGSP
Trigger: TGGGCTTCCAGGGGCCATGGTTGCACACTTGTCTCCTTTGGGCCACAGTGGCCATCCTGCTGGTCCCTCCAGTGGTGACCCAGGAGTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS GCA 90 bp GGTGGGCATGCCTGGGGACGTGACGGTGATACTCACTGGAGACAATaGCATCCTCATCTTCGTGGCTGTGGCTCCTCTGTCTGGGGAGGT +
Preference number: 5 (lower is better)
Translates to: GGHAWGRDGDTHWRQ*HPHLRGCGSSVWGG
Trigger: ACCTCCCCAGACAGAGGAGCCACAGCCACGAAGATGAGGATGGCATTGTCTCCAGTGAGTATCACCGTCACGTCCCCAGGCATGCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS-3UTR CAA 90 bp ACGGGTCCCTTGAACGGCATCATCTCCCGGCCCAGCCCCCACACACTTACTGATCCAGGGATGCCTGCATaGTTGTTCCAGTTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: TGPLNGIISRPSPHTLTDPGMPA*LFQLPR
Trigger: CCTGGGCAACTGGAACAACAATGCAGGCATCCCTGG...ATCAGTAAGTGTGTGGGGGCTGGGCCGGGAGATGATGCCGTTCAAGGGACCCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS CCA 90 bp CGCGGCCAGGGTACCTGTGGTCTTGGACCCTGTGGCCATATTCCCTaGAGAAGTCTTCACCCTCTTCTCTGTGGCCTCTGTCCTTCTCAC +
Preference number: 5 (lower is better)
Translates to: RGQGTCGLGPCGHIP*RSLHPLLCGLCPSH
Trigger: GTGAGAAGGACAGAGGCCACAGAGAAGAGGGTGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp TCCTCTCCAACCTCGCGGCCAGGGTACCTGTGGTCTTGGACCCTGTaGCCATATTCCCTGGAGAAGTCTTCACCCTCTTCTCTGTGGCCT +
Preference number: 5 (lower is better)
Translates to: SSPTSRPGYLWSWTL*PYSLEKSSPSSLWP
Trigger: AGGCCACAGAGAAGAGGGTGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGTTGGAGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp GAGACATTCTCCTCTCCAACCTCGCGGCCAGGGTACCTGTGGTCTTaGACCCTGTGGCCATATTCCCTGGAGAAGTCTTCACCCTCTTCT +
Preference number: 5 (lower is better)
Translates to: ETFSSPTSRPGYLWS*TLWPYSLEKSSPSS
Trigger: AGAAGAGGGTGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGTTGGAGAGGAGAATGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp TCTTCAGAGACATTCTCCTCTCCAACCTCGCGGCCAGGGTACCTGTaGTCTTGGACCCTGTGGCCATATTCCCTGGAGAAGTCTTCACCC +
Preference number: 5 (lower is better)
Translates to: SSETFSSPTSRPGYL*SWTLWPYSLEKSSP
Trigger: GGGTGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGTTGGAGAGGAGAATGTCTCTGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 90 bp TCTTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCCCCTGCTTCCTATaGTGGCTCAGTGGAGCTGAAACTGCAGCCCTGTCTACCTTGCTT +
Preference number: 5 (lower is better)
Translates to: SSSSSSSSSSSPCFL*WLSGAETAALSTLL
Trigger: AAGCAAGGTAGACAGGGCTGCAGTTTCAGCTCCACTGAGCCATCATAGGAAGCAGGGGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp CATCATCGTCATCATCTTCCTCTCCGTGGCCATGGTGGGCATGCCTaGGGACGTGACGGTGATACTCACTGGAGACAATGCCATCCTCAT +
Preference number: 5 (lower is better)
Translates to: HHRHHLPLRGHGGHA*GRDGDTHWRQCHPH
Trigger: ATGAGGATGGCATTGTCTCCAGTGAGTATCACCGTCACGTCCCCAGGCATGCCCACCATGGCCACGGAGAGGAAGATGATGACGATGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp TCCTCCCTGTCAGCATTGTGGCCTTGGGGACGGTGGCTTGCAACATaGTGGCTGTACTTGACTGCTACCTCTTCTTCACTCTCACGTCCA +
Preference number: 5 (lower is better)
Translates to: SSLSALWPWGRWLAT*WLYLTATSSSLSRP
Trigger: TGGACGTGAGAGTGAAGAAGAGGTAGCAGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGACAGGGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS-3UTR CAA 90 bp ACGGGTCCCTTGAACGGCATCATCTCCCGGCCCAGCCCCCACACACTTACTGATACAGAGGTAGCAGAATaGACAGTGCTTGATATCCCC +
Preference number: 5 (lower is better)
Translates to: TGPLNGIISRPSPHTLTDTEVAE*TVLDIP
Trigger: GGGGATATCAAGCACTGTCAATTCTGCTACCTCTGT...ATCAGTAAGTGTGTGGGGGCTGGGCCGGGAGATGATGCCGTTCAAGGGACCCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS CCA 90 bp TCTAGAGAGTCCTCCTCCCTGTCAGCATTGTGGCCTTGGGGACGGTaGCTTGCAACATGGTGGCTGTACTTGACTGCTACCTCTTCTTCA +
Preference number: 5 (lower is better)
Translates to: SRESSSLSALWPWGR*LATWWLYLTATSSS
Trigger: TGAAGAAGAGGTAGCAGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGACAGGGAGGAGGACTCTCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp AGCTGTGGTCACCTTCCTTCCTTGATTCTCTTGAACTGGGTCCTGTaGGTTGCAGGGGCTGATGAGCAATCTCTCCCTGAACAGGCTCTC +
Preference number: 5 (lower is better)
Translates to: SCGHLPSLILLNWVL*VAGADEQSLPEQAL
Trigger: GAGAGCCTGTTCAGGGAGAGATTGCTCATCAGCCCCTGCAACCCACAGGACCCAGTTCAAGAGAATCAAGGAAGGAAGGTGACCACAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp CCTCTTGAGAGCTGTGGTCACCTTCCTTCCTTGATTCTCTTGAACTaGGTCCTGTGGGTTGCAGGGGCTGATGAGCAATCTCTCCCTGAA +
Preference number: 5 (lower is better)
Translates to: PLESCGHLPSLILLN*VLWVAGADEQSLPE
Trigger: TTCAGGGAGAGATTGCTCATCAGCCCCTGCAACCCACAGGACCCAGTTCAAGAGAATCAAGGAAGGAAGGTGACCACAGCTCTCAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp CAGGGCTTGATACAGAGAGGAGGAGAAATAGTCAACGTAGCTTCCTaGAGTGCAGAGCGTGTCACACACCAGCGGACAGAGGTAGCAGAA +
Preference number: 5 (lower is better)
Translates to: QGLIQRGGEIVNVAS*SAERVTHQRTEVAE
Trigger: TTCTGCTACCTCTGTCCGCTGGTGTGTGACACGCTCTGCACTCCAGGAAGCTACGTTGACTATTTCTCCTCCTCTCTGTATCAAGCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 90 bp GTGGCTTTGGCGGCCATGGCTGGGGACATGATGGTAGTCTTCTTCTaGGTCATCCTCATCATCTTTGTGCTCATGGTCTCTGTGTCTGTG +
Preference number: 5 (lower is better)
Translates to: VALAAMAGDMMVVFF*VILIIFVLMVSVSV
Trigger: CACAGACACAGAGACCATGAGCACAAAGATGATGAGGATGACTCAGAAGAAGACTACCATCATGTCCCCAGCCATGGCCGCCAAAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 90 bp TCCTCACTATGGGCTTGCCTCTGCTCTGGGTCTTCATCTCCCTCTTaGGAGCTGTGGTCACCTTCCTTCCTTGATTCTCTTGAACTGGGT +
Preference number: 5 (lower is better)
Translates to: SSLWACLCSGSSSPS*ELWSPSFLDSLELG
Trigger: ACCCAGTTCAAGAGAATCAAGGAAGGAAGGTGACCACAGCTCTCAAGAGGGAGATGAAGACCCAGAGCAGAGGCAAGCCCATAGTGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp TCATTCATGTGTTCTTCTAGAGAGTCCTCCTCCCTGTCAGCATTGTaGCCTTGGGGACGGTGGCTTGCAACATGGTGGCTGTACTTGACT +
Preference number: 5 (lower is better)
Translates to: SFMCSSRESSSLSAL*PWGRWLATWWLYLT
Trigger: AGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGACAGGGAGGAGGACTCTCTAGAAGAACACATGAATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 90 bp TCAGTAGAAATGTCCTCATCATCACCCCTGGAGGCTCTGTGGTGGTaGTGGCCTGGGACTTCATTCATGTGTTCTTCTAGAGAGTCCTCC +
Preference number: 5 (lower is better)
Translates to: SVEMSSSSPLEALWW*WPGTSFMCSSRESS
Trigger: GGAGGACTCTCTAGAAGAACACATGAATGAAGTCCCAGGCCATCACCACCACAGAGCCTCCAGGGGTGATGATGAGGACATTTCTACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS GCA 90 bp AAATCTTCATTGTCATGTTCCCGGTGCCCGTGGAGCTGTCTAACATaGCCTCTGAAGACCTCTTCAGAGACATTCTCCTCTCCAACCTCG +
Preference number: 5 (lower is better)
Translates to: KSSLSCSRCPWSCLT*PLKTSSETFSSPTS
Trigger: CGAGGTTGGAGAGGAGAATGTCTCTGAAGAGGTCTTCAGAGGGCATGTTAGACAGCTCCACGGGCACCGGGAACATGACAATGAAGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp TTCGGTACATCGGTTGCAGAAAGAACAGTAGCCACACAAAGACCCTaGCTGGTAATTTTCGTACTCCTGGGCATCCTGCTGACCTGTGAC +
Preference number: 5 (lower is better)
Translates to: FGTSVAERTVATQRP*LVIFVLLGILLTCD
Trigger: GTCACAGGTCAGCAGGATGCCCAGGAGTACGAAAATTACCAGCCAGGGTCTTTGTGTGGCTACTGTTCTTTCTGCAACCGATGTACCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 90 bp TTCATCTTCTCGGCCTTGAACTCTGTGGGTGTGACTGTCTTCATCTaGGTCCCCATCGTCTTCCTCCTCATGATCCTGATATCTGTGAGC +
Preference number: 5 (lower is better)
Translates to: FIFSALNSVGVTVFI*VPIVFLLMILISVS
Trigger: GCTCACAGATATCAGGATCATGAGGAGGAAGACGATGGGGACTCAGATGAAGACAGTCACACCCACAGAGTTCAAGGCCGAGAAGATGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 90 bp TACTTGACTGCTACCTCTTCTTCACTCTCACGTCCAAGATCATGGTaGGCATGTCTAGGAGACTGGTGCCAGTGTTCAGTGGATACAGCC +
Preference number: 5 (lower is better)
Translates to: YLTATSSSLSRPRSW*ACLGDWCQCSVDTA
Trigger: GGCTGTATCCACTGAACACTGGCACCAGTCTCCTAGACATGCTCACCATGATCTTGGACGTGAGAGTGAAGAAGAGGTAGCAGTCAAGTA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 90 bp TCATCATCATCATCATCATCGTCATCTTGCTCTTCGTTGTGGCCTTaGTGGTCCTGGGTATGGTGTCTGTATTCACCAGAGTCACCGTCT +
Preference number: 5 (lower is better)
Translates to: SSSSSSSSSCSSLWP*WSWVWCLYSPESPS
Trigger: AGACGGTGACTCTGGTGAATACAGACACCATACCCAGGACCACCAAGGCCACAACGAAGAGCAAGATGACGATGATGATGATGATGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 90 bp TCATCCTCATCATCTTTGTGCTCATGGTCTCTGTGTCTGTGGGCTTaGTGCACATGCTCAGTAGAGTCATCATCTCCATCATCATCATCA +
Preference number: 5 (lower is better)
Translates to: SSSSSLCSWSLCLWA*CTCSVESSSPSSSS
Trigger: TGATGATGATGATGGAGATGATGACTCTACTGAGCATGTGCATCAAGCCCACAGACACAGAGACCATGAGCACAAAGATGATGAGGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS GCA 90 bp TCTTCTTTATCTTCATCATCATCATCATCATCATCATCGTCATCTTaGTCTTCGTTGTGGCCTTGGTGGTCCTGGGTATGGTGTCTGTAT +
Preference number: 5 (lower is better)
Translates to: SSLSSSSSSSSSSSS*SSLWPWWSWVWCLY
Trigger: ATACAGACACCATACCCAGGACCACCAAGGCCACAACGAAGAGCAAGATGACGATGATGATGATGATGATGATGATGAAGATAAAGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp GCCCAGACCGGCCCCTCTCAACTCCTGGGTCACCACTaGAGGGACCAGCAGGATGGCCACTGTGGCCCAAAG +
Preference number: 6 (lower is better)
Translates to: AQTGPSQLLGHH*RDQQDGHCGPK
Trigger: CTTTGGGCCACAGTGGCCATCCTGCTGGTCCCTCCAGTGGTGACCCAGGAGTTGAGAGGGGCCGGTCTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS CCA 72 bp CAGTTGCCCAGGCCCAGACCGGCCCCTCTCAACTCCTaGGTCACCACTGGAGGGACCAGCAGGATGGCCACT +
Preference number: 6 (lower is better)
Translates to: QLPRPRPAPLNS*VTTGGTSRMAT
Trigger: AGTGGCCATCCTGCTGGTCCCTCCAGTGGTGACCCAGGAGTTGAGAGGGGCCGGTCTGGGCCTGGGCAACTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS GCA 72 bp CTGAGGACCCAGGGATGCCTGCATTGTTGTTCCAGTTaGCCAGGCCCAGACCGGCCCCTCTCAACTCCTGGG +
Preference number: 6 (lower is better)
Translates to: LRTQGCLHCCSS*PGPDRPLSTPG
Trigger: CCCAGGAGTTGAGAGGGGCCGGTCTGGGCCTGGGCAACTGGAACAACAATGCAGGCATCCCTGGGTCCTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS CAA 72 bp TCTGAGGACCCAGGGATGCCTGCATTGTTGTTCCAGTaGCCCAGGCCCAGACCGGCCCCTCTCAACTCCTGG +
Preference number: 6 (lower is better)
Translates to: SEDPGMPALLFQ*PRPRPAPLNSW
Trigger: CCAGGAGTTGAGAGGGGCCGGTCTGGGCCTGGGCAACTGGAACAACAATGCAGGCATCCCTGGGTCCTCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS CCA 72 bp TCAACTCCTGGGTCACCACTGGAGGGACCAGCAGGATaGCCACTGTGGCCCAAAGGAGACAAGTGTGCAACC +
Preference number: 6 (lower is better)
Translates to: STPGSPLEGPAG*PLWPKGDKCAT
Trigger: GGTTGCACACTTGTCTCCTTTGGGCCACAGTGGCCATCCTGCTGGTCCCTCCAGTGGTGACCCAGGAGTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS CCA 72 bp GGTGGGCATGCCTGGGGACGTGACGGTGATACTCACTaGAGACAATGCCATCCTCATCTTCGTGGCTGTGGC +
Preference number: 6 (lower is better)
Translates to: GGHAWGRDGDTH*RQCHPHLRGCG
Trigger: GCCACAGCCACGAAGATGAGGATGGCATTGTCTCCAGTGAGTATCACCGTCACGTCCCCAGGCATGCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp CTCCTCTCCAACCTCGCGGCCAGGGTACCTGTGGTCTaGGACCCTGTGGCCATATTCCCTGGAGAAGTCTTC +
Preference number: 6 (lower is better)
Translates to: LLSNLAARVPVV*DPVAIFPGEVF
Trigger: GAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGTTGGAGAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp CTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCACTATGGGCTaGCCTCTGCTCTGGGTCTTCATCTCCCTCTTGAGAGCTGTGGTC +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLLLTMG*PLLWVFISLLRAVV
Trigger: GACCACAGCTCTCAAGAGGGAGATGAAGACCCAGAGCAGAGGCAAGCCCATAGTGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS GCA 72 bp GCCTGGGGACGTGACGGTGATACTCACTGGAGACAATaGCATCCTCATCTTCGTGGCTGTGGCTCCTCTGTC +
Preference number: 6 (lower is better)
Translates to: AWGRDGDTHWRQ*HPHLRGCGSSV
Trigger: GACAGAGGAGCCACAGCCACGAAGATGAGGATGGCATTGTCTCCAGTGAGTATCACCGTCACGTCCCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp ACCTCGCGGCCAGGGTACCTGTGGTCTTGGACCCTGTaGCCATATTCCCTGGAGAAGTCTTCACCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: TSRPGYLWSWTL*PYSLEKSSPSS
Trigger: AGAAGAGGGTGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp TCCTCTCCAACCTCGCGGCCAGGGTACCTGTGGTCTTaGACCCTGTGGCCATATTCCCTGGAGAAGTCTTCA +
Preference number: 6 (lower is better)
Translates to: SSPTSRPGYLWS*TLWPYSLEKSS
Trigger: TGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGTTGGAGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp ACATTCTCCTCTCCAACCTCGCGGCCAGGGTACCTGTaGTCTTGGACCCTGTGGCCATATTCCCTGGAGAAG +
Preference number: 6 (lower is better)
Translates to: TFSSPTSRPGYL*SWTLWPYSLEK
Trigger: CTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGTTGGAGAGGAGAATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp TCCTCCTCCCTGTCAGCATTGTGGCCTTGGGGACGGTaGCTTGCAACATGGTGGCTGTACTTGACTGCTACC +
Preference number: 6 (lower is better)
Translates to: SSSLSALWPWGR*LATWWLYLTAT
Trigger: GGTAGCAGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGACAGGGAGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp AGAGACATTCTCCTCTCCAACCTCGCGGCCAGGGTACCTGTGGTCTaGGACCCTGTGGCCATATTCCCTGGAGAAGTCTTCACCCTCTTC +
Preference number: 6 (lower is better)
Translates to: RDILLSNLAARVPVV*DPVAIFPGEVFTLF
Trigger: GAAGAGGGTGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACCCTGGCCGCGAGGTTGGAGAGGAGAATGTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS GCA 72 bp CTCCCTGTCAGCATTGTGGCCTTGGGGACGGTGGCTTaGAACATGGTGGCTGTACTTGACTGCTACCTCTTC +
Preference number: 6 (lower is better)
Translates to: LPVSIVALGTVA*NMVAVLDCYLF
Trigger: GAAGAGGTAGCAGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGACAGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp TGTTCTTCTAGAGAGTCCTCCTCCCTGTCAGCATTGTaGCCTTGGGGACGGTGGCTTGCAACATGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: CSSRESSSLSAL*PWGRWLATWWL
Trigger: CAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGACAGGGAGGAGGACTCTCTAGAAGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp CTCCTCCTCCTCCTCCTTCTCCTCCTCACTATGGGCTaGCCTCTGCTCTGGGTCTTCATCTCCCTCTTGAGA +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLTMG*PLLWVFISLLR
Trigger: TCTCAAGAGGGAGATGAAGACCCAGAGCAGAGGCAAGCCCATAGTGAGGAGGAGAAGGAGGAGGAGGAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp CTCTGTCTGGGGAGGTGGTTCTCTGCCGAGTCTCCTAAATCTTCATaGTCATGTTCCCGGTGCCCGTGGAGCTGTCTAACATGCCCTCTG +
Preference number: 6 (lower is better)
Translates to: LCLGRWFSAESPKSS*SCSRCPWSCLTCPL
Trigger: CAGAGGGCATGTTAGACAGCTCCACGGGCACCGGGAACATGACAATGAAGATTTAGGAGACTCGGCAGAGAACCACCTCCCCAGACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp GGTACCTGTGGTCTTGGACCCTGTGGCCATATTCCCTaGAGAAGTCTTCACCCTCTTCTCTGTGGCCTCTGT +
Preference number: 6 (lower is better)
Translates to: GTCGLGPCGHIP*RSLHPLLCGLC
Trigger: ACAGAGGCCACAGAGAAGAGGGTGAAGACTTCTCCAGGGAATATGGCCACAGGGTCCAAGACCACAGGTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp GAGCGTGTCACACACCAGCGGACAGAGGTAGCAGAATaGACAGTGCTGACACTGGTCACAGTGTTCCCCCAT +
Preference number: 6 (lower is better)
Translates to: ERVTHQRTEVAE*TVLTLVTVFPH
Trigger: ATGGGGGAACACTGTGACCAGTGTCAGCACTGTCAATTCTGCTACCTCTGTCCGCTGGTGTGTGACACGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp CTGGGTCTTCATCTCCCTCTTGAGAGCTGTGGTCACCTTCCTTCCTaGATTCTCTTGAACTGGGTCCTGTGGGTTGCAGGGGCTGATGAG +
Preference number: 6 (lower is better)
Translates to: LGLHLPLESCGHLPS*ILLNWVLWVAGADE
Trigger: CTCATCAGCCCCTGCAACCCACAGGACCCAGTTCAAGAGAATCAAGGAAGGAAGGTGACCACAGCTCTCAAGAGGGAGATGAAGACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp TCAGCATTGTGGCCTTGGGGACGGTGGCTTGCAACATaGTGGCTGTACTTGACTGCTACCTCTTCTTCACTC +
Preference number: 6 (lower is better)
Translates to: SALWPWGRWLAT*WLYLTATSSSL
Trigger: GAGTGAAGAAGAGGTAGCAGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp CTTGATATCCCCGGTGGATGTGGTGACCAAACTCAGTaGATAGGTCCTCTGAGGACCCAGGGATGCCTGCAT +
Preference number: 6 (lower is better)
Translates to: LDIPGGCGDQTQ*IGPLRTQGCLH
Trigger: ATGCAGGCATCCCTGGGTCCTCAGAGGACCTATCAACTGAGTTTGGTCACCACATCCACCGGGGATATCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085351.7
ENSMUST00000211327.2
CDS CAA 72 bp CCTTGGGGACGGTGGCTTGCAACATGGTGGCTGTACTaGACTGCTACCTCTTCTTCACTCTCACGTCCAAGA +
Preference number: 6 (lower is better)
Translates to: PWGRWLATWWLY*TATSSSLSRPR
Trigger: TCTTGGACGTGAGAGTGAAGAAGAGGTAGCAGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp CTTGAGAGCTGTGGTCACCTTCCTTCCTTGATTCTCTaGAACTGGGTCCTGTGGGTTGCAGGGGCTGATGAG +
Preference number: 6 (lower is better)
Translates to: LESCGHLPSLIL*NWVLWVAGADE
Trigger: CTCATCAGCCCCTGCAACCCACAGGACCCAGTTCAAGAGAATCAAGGAAGGAAGGTGACCACAGCTCTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp CCTTCTCACCTTGATATCCCCGGTGGATGTGGTGACCAAACTCAGTaGATAGGTCCTCTGAGGACCCAGGGATGCCTGCATTGTTGTTCC +
Preference number: 6 (lower is better)
Translates to: PSHLDIPGGCGDQTQ*IGPLRTQGCLHCCS
Trigger: GGAACAACAATGCAGGCATCCCTGGGTCCTCAGAGGACCTATCAACTGAGTTTGGTCACCACATCCACCGGGGATATCAAGGTGAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 72 bp TGGGCTTGCCTCTGCTCTGGGTCTTCATCTCCCTCTTaGGAGCTGTGGTCACCTTCCTTCCTTGATTCTCTT +
Preference number: 6 (lower is better)
Translates to: WACLCSGSSSPS*ELWSPSFLDSL
Trigger: AAGAGAATCAAGGAAGGAAGGTGACCACAGCTCTCAAGAGGGAGATGAAGACCCAGAGCAGAGGCAAGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS GCA 72 bp TTGTCATGTTCCCGGTGCCCGTGGAGCTGTCTAACATaGCCTCTGAAGACCTCTTCAGAGACATTCTCCTCT +
Preference number: 6 (lower is better)
Translates to: LSCSRCPWSCLT*PLKTSSETFSS
Trigger: AGAGGAGAATGTCTCTGAAGAGGTCTTCAGAGGGCATGTTAGACAGCTCCACGGGCACCGGGAACATGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS GCA 72 bp GGGACGGTGGCTTGCAACATGGTGGCTGTACTTGACTaGTACCTCTTCTTCACTCTCACGTCCAAGATCATG +
Preference number: 6 (lower is better)
Translates to: GTVACNMVAVLD*YLFFTLTSKIM
Trigger: CATGATCTTGGACGTGAGAGTGAAGAAGAGGTAGCAGTCAAGTACAGCCACCATGTTGCAAGCCACCGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp TCATCTTCGTGGCTGTGGCTCCTCTGTCTGGGGAGGTaGTTCTCTGCCGAGTCTCCTAAATCTTCATTGTCA +
Preference number: 6 (lower is better)
Translates to: SSSWLWLLCLGR*FSAESPKSSLS
Trigger: TGACAATGAAGATTTAGGAGACTCGGCAGAGAACCACCTCCCCAGACAGAGGAGCCACAGCCACGAAGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp CACCTTCCTTCCTTGATTCTCTTGAACTGGGTCCTGTaGGTTGCAGGGGCTGATGAGCAATCTCTCCCTGAA +
Preference number: 6 (lower is better)
Translates to: HLPSLILLNWVL*VAGADEQSLPE
Trigger: TTCAGGGAGAGATTGCTCATCAGCCCCTGCAACCCACAGGACCCAGTTCAAGAGAATCAAGGAAGGAAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp AGCTGTGGTCACCTTCCTTCCTTGATTCTCTTGAACTaGGTCCTGTGGGTTGCAGGGGCTGATGAGCAATCT +
Preference number: 6 (lower is better)
Translates to: SCGHLPSLILLN*VLWVAGADEQS
Trigger: AGATTGCTCATCAGCCCCTGCAACCCACAGGACCCAGTTCAAGAGAATCAAGGAAGGAAGGTGACCACAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp ATACAGAGAGGAGGAGAAATAGTCAACGTAGCTTCCTaGAGTGCAGAGCGTGTCACACACCAGCGGACAGAG +
Preference number: 6 (lower is better)
Translates to: IQRGGEIVNVAS*SAERVTHQRTE
Trigger: CTCTGTCCGCTGGTGTGTGACACGCTCTGCACTCCAGGAAGCTACGTTGACTATTTCTCCTCCTCTCTGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp ACTTCATTCATGTGTTCTTCTAGAGAGTCCTCCTCCCTGTCAGCATaGTGGCCTTGGGGACGGTGGCTTGCAACATGGTGGCTGTACTTG +
Preference number: 6 (lower is better)
Translates to: TSFMCSSRESSSLSA*WPWGRWLATWWLYL
Trigger: CAAGTACAGCCACCATGTTGCAAGCCACCGTCCCCAAGGCCACAATGCTGACAGGGAGGAGGACTCTCTAGAAGAACACATGAATGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp TTGACAGTGCTTGATATCCCCGGTGGATGTGGTGACCAAACTCAGTaGATAGGTCCTCTGAGGACCCAGGGATGCCTGCATTGTTGTTCC +
Preference number: 6 (lower is better)
Translates to: LTVLDIPGGCGDQTQ*IGPLRTQGCLHCCS
Trigger: GGAACAACAATGCAGGCATCCCTGGGTCCTCAGAGGACCTATCAACTGAGTTTGGTCACCACATCCACCGGGGATATCAAGCACTGTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211327.2
CDS TCA 72 bp TCGGCCTTGAACTCTGTGGGTGTGACTGTCTTCATCTaGGTCCCCATCGTCTTCCTCCTCATGATCCTGATA +
Preference number: 6 (lower is better)
Translates to: SALNSVGVTVFI*VPIVFLLMILI
Trigger: TATCAGGATCATGAGGAGGAAGACGATGGGGACTCAGATGAAGACAGTCACACCCACAGAGTTCAAGGCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 72 bp GCTACCTCTTCTTCACTCTCACGTCCAAGATCATGGTaGGCATGTCTAGGAGACTGGTGCCAGTGTTCAGTG +
Preference number: 6 (lower is better)
Translates to: ATSSSLSRPRSW*ACLGDWCQCSV
Trigger: CACTGAACACTGGCACCAGTCTCCTAGACATGCTCACCATGATCTTGGACGTGAGAGTGAAGAAGAGGTAGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS TCA 72 bp ATGTCCTCATCATCACCCCTGGAGGCTCTGTGGTGGTaGTGGCCTGGGACTTCATTCATGTGTTCTTCTAGA +
Preference number: 6 (lower is better)
Translates to: MSSSSPLEALWW*WPGTSFMCSSR
Trigger: TCTAGAAGAACACATGAATGAAGTCCCAGGCCATCACCACCACAGAGCCTCCAGGGGTGATGATGAGGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS GCA 72 bp TCTTCTTCCTTCCTGTGGCCTTGGGTCTGGTGCCGGTaGTCAGTGGAGTCTTCTTTATCTTCATCATCATCA +
Preference number: 6 (lower is better)
Translates to: SSSFLWPWVWCR*SVESSLSSSSS
Trigger: TGATGATGATGAAGATAAAGAAGACTCCACTGAGCACCGGCACCAGACCCAAGGCCACAGGAAGGAAGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp ATCGTCTTCCTCCTCATGATCCTGATATCTGTGAGCTaGGTGTCCATGCTCAGTAGAGACACCATCGTCATC +
Preference number: 6 (lower is better)
Translates to: IVFLLMILISVS*VSMLSRDTIVI
Trigger: GATGACGATGGTGTCTCTACTGAGCATGGACACCAAGCTCACAGATATCAGGATCATGAGGAGGAAGACGAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp ATCATCATCATCGTCATCTTGCTCTTCGTTGTGGCCTaGGTGGTCCTGGGTATGGTGTCTGTATTCACCAGA +
Preference number: 6 (lower is better)
Translates to: IIIIVILLFVVA*VVLGMVSVFTR
Trigger: TCTGGTGAATACAGACACCATACCCAGGACCACCAAGGCCACAACGAAGAGCAAGATGACGATGATGATGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp GTCATCCTCATCATCTTTGTGCTCATGGTCTCTGTGTCTGTGGGCTaGATGCACATGCTCAGTAGAGTCATCATCTCCATCATCATCATC +
Preference number: 6 (lower is better)
Translates to: VILIIFVLMVSVSVG*MHMLSRVIISIIII
Trigger: GATGATGATGATGGAGATGATGACTCTACTGAGCATGTGCATCAAGCCCACAGACACAGAGACCATGAGCACAAAGATGATGAGGATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 72 bp ATCATCTTTGTGCTCATGGTCTCTGTGTCTGTGGGCTaGATGCACATGCTCAGTAGAGTCATCATCTCCATC +
Preference number: 6 (lower is better)
Translates to: IIFVLMVSVSVG*MHMLSRVIISI
Trigger: GATGGAGATGATGACTCTACTGAGCATGTGCATCAAGCCCACAGACACAGAGACCATGAGCACAAAGATGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CCA 72 bp CATCTTCTTCTTCTTCATAGCCTTGGCGTCCATGCCTaGAGACATGATGATCATCTTCATCTGACTCATCCT +
Preference number: 6 (lower is better)
Translates to: HLLLLHSLGVHA*RHDDHLHLTHP
Trigger: AGGATGAGTCAGATGAAGATGATCATCATGTCTCCAGGCATGGACGCCAAGGCTATGAAGAAGAAGAAGATG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7
CDS CAA 90 bp GTCTTCTTTATCTTCATCATCATCATCATCATCATCATCGTCATCTaGCTCTTCGTTGTGGCCTTGGTGGTCCTGGGTATGGTGTCTGTA +
Preference number: 6 (lower is better)
Translates to: VFFIFIIIIIIIIVI*LFVVALVVLGMVSV
Trigger: TACAGACACCATACCCAGGACCACCAAGGCCACAACGAAGAGCAAGATGACGATGATGATGATGATGATGATGATGAAGATAAAGAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085351.7