RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HPS5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014418

Ensembl transcript IDs: ENSMUST00000014562.14, ENSMUST00000107653.8, ENSMUST00000107654.8, ENSMUST00000123725.2, ENSMUST00000130365.2, ENSMUST00000138480.2, ENSMUST00000142663.8, ENSMUST00000152759.8, ENSMUST00000153789.8, ENSMUST00000211347.2, ENSMUST00000211471.2, ENSMUST00000211571.2

Found 526 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACTGAGCACTTCCCCGTCAAAGTTCACTTCCCACATCCGGGAGCCTaGGCGGGCGCAGTAGATCACAGGCTGCTGGCCCCCAGCACACCG +
Preference number: 1 (lower is better)
Translates to: TEHFPVKVHFPHPGA*AGAVDHRLLAPSTP
Trigger: CGGTGTGCTGGGGGCCAGCAGCCTGTGATCTACTGCGCCCGCCCAGGCTCCCGGATGTGGGAAGTGAACTTTGACGGGGAAGTGCTCAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR TCA 90 bp AGCACCTCCAGGCTGCTTCCAGTGAAGGTCAGCCCACTGCTTCCTTaGGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCC +
Preference number: 1 (lower is better)
Translates to: STSRLLPVKVSPLLP*ETLRSQSHKSQGLA
Trigger: GGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCTGACCTTCACTGGAAGCAGCCTGGAGGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 90 bp TCAGCAGCTGCAGCAGCATGTTTTGGGGTGTCCTCTTCCCTTCTGTaGCAAAGACCTCTGCAGGGTCGAGAGCAGGATTCCACTTGGTCA +
Preference number: 1 (lower is better)
Translates to: SAAAAACFGVSSSLL*QRPLQGREQDSTWS
Trigger: TGACCAAGTGGAATCCTGCTCTCGACCCTGCAGAGGTCTTTGGCACAGAAGGGAAGAGGACACCCCAAAACATGCTGCTGCAGCTGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 90 bp TTGATAGGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTaGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGA +
Preference number: 1 (lower is better)
Translates to: LIGAGPSLRLPFSDS*GAGLVLLVCSRCRR
Trigger: TCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCCTATCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
3UTR TCA 90 bp AGCACAACGTTGTCAATTCCGCCAGGTCCCTCTGAAGGCTGTTTGTaGTGGCGTATGGAGAGCATACTCGAAAACGGTCAGCCGAGGGCT +
Preference number: 1 (lower is better)
Translates to: STTLSIPPGPSEGCL*WRMESILENGQPRA
Trigger: AGCCCTCGGCTGACCGTTTTCGAGTATGCTCTCCATACGCCATCACAAACAGCCTTCAGAGGGACCTGGCGGAATTGACAACGTTGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 90 bp TGTCAATTCCGCCAGGTCCCTCTGAAGGCTGTTTGTGATGGCGTATaGAGAGCATACTCGAAAACGGTCAGCCGAGGGCTCACTGAGGTT +
Preference number: 1 (lower is better)
Translates to: CQFRQVPLKAVCDGV*RAYSKTVSRGLTEV
Trigger: AACCTCAGTGAGCCCTCGGCTGACCGTTTTCGAGTATGCTCTCCATACGCCATCACAAACAGCCTTCAGAGGGACCTGGCGGAATTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 90 bp GTTGATGAATTTCTTTCTCCTCAGTGTCCTCCTCCAGAGGGCAGGTaGCTGCACTCACTTCCTCTTCATGTGCTCGGTCAGCATCCTTGG +
Preference number: 1 (lower is better)
Translates to: VDEFLSPQCPPPEGR*LHSLPLHVLGQHPW
Trigger: CCAAGGATGCTGACCGAGCACATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGGAGGACACTGAGGAGAAAGAAATTCATCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR CCA 90 bp GTTGTAGAAGGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTAGATAGGCCAAGAACTGAGCAGGAT +
Preference number: 1 (lower is better)
Translates to: VVEGTQGRMATGLPA*TSPDCLDRPRTEQD
Trigger: ATCCTGCTCAGTTCTTGGCCTATCTAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTACAAC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 90 bp GGCAAAGCTGTGCGATGTCGGAGGGCGAAATGGACGGATAAAACTTaGTGCAAGCTCGAAGGGCTGACTCCCCAAATCTATCATACAACC +
Preference number: 1 (lower is better)
Translates to: GKAVRCRRAKWTDKT*CKLEGLTPQIYHTT
Trigger: GGTTGTATGATAGATTTGGGGAGTCAGCCCTTCGAGCTTGCATCAAGTTTTATCCGTCCATTTCGCCCTCCGACATCGCACAGCTTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 90 bp AGGAAGCGGTCACACTTCTCAAGCATGCCTTGTATCAGCGCTCTCTaGCTTCTCTCAGCAATCCTCAGGATATCACAGGTTCTGGTGAAC +
Preference number: 1 (lower is better)
Translates to: RKRSHFSSMPCISAL*LLSAILRISQVLVN
Trigger: GTTCACCAGAACCTGTGATATCCTGAGGATTGCTGAGAGAAGGCAGAGAGCGCTGATACAAGGCATGCTTGAGAAGTGTGACCGCTTCCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 90 bp ATGAATTTCTTTCTCCTCAGTGTCCTCCTCCAGAGGGCAGGTGACTaGACTCACTTCCTCTTCATGTGCTCGGTCAGCATCCTTGGATTC +
Preference number: 1 (lower is better)
Translates to: MNFFLLSVLLQRAGD*THFLFMCSVSILGF
Trigger: GAATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGGAGGACACTGAGGAGAAAGAAATTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR TCA 90 bp ACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGGTCCCTCTaGAGGCTGTTTGTGATGGCGTATGGAGAGCATACTCGAAAACGG +
Preference number: 1 (lower is better)
Translates to: TFSSKHNVVNSARSL*RLFVMAYGEHTRKR
Trigger: CCGTTTTCGAGTATGCTCTCCATACGCCATCACAAACAGCCTTCAGAGGGACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 90 bp GGGTGCCCTTCATCATCCACTGTACTTGTGCTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGCCATTCAAGTCTTAAAGACTCTGGT +
Preference number: 1 (lower is better)
Translates to: GCPSSSTVLVLGGAS*DTAKSSHSSLKDSG
Trigger: ACCAGAGTCTTTAAGACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 90 bp GGCAGAAAAGCTTCACTCTTATCTACCTCAGACATCACTGGACTGTaGGAAGCACTCTCTTCATTCCTATTGGCACCACAGCCCTGCTCT +
Preference number: 1 (lower is better)
Translates to: GRKASLLSTSDITGL*EALSSFLLAPQPCS
Trigger: AGAGCAGGGCTGTGGTGCCAATAGGAATGAAGAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTAGATAAGAGTGAAGCTTTTCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR CCA 90 bp GCTGAAGGGCAGAAAAGCTTCACTCTTATCTACCTCAGACATCACTaGACTGTGGGAAGCACTCTCTTCATTCCTATTGGCACCACAGCC +
Preference number: 1 (lower is better)
Translates to: AEGQKSFTLIYLRHH*TVGSTLFIPIGTTA
Trigger: GGCTGTGGTGCCAATAGGAATGAAGAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTAGATAAGAGTGAAGCTTTTCTGCCCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR CCA 90 bp ATGAATTTCTTTCTCCTTCCTCTTCATGTGCTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCAGCTCGGGGCTTCCGTGAAGGGTGC +
Preference number: 1 (lower is better)
Translates to: MNFFLLPLHVLGQHP*IQKALSARGFREGC
Trigger: GCACCCTTCACGGAAGCCCCGAGCTGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGGAGAAAGAAATTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR TCA 90 bp CTCTCTGCCTTCTCTCAGCAATCCTCAGGATATCACAGGTTCTGGTaGACTTTTCTGACAACTCAAGAGCCAGACCACACTCCTGTAGCA +
Preference number: 1 (lower is better)
Translates to: LSAFSQQSSGYHRFW*TFLTTQEPDHTPVA
Trigger: TGCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATATCCTGAGGATTGCTGAGAGAAGGCAGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 90 bp GAAGAGACACGAGGGGAGATGGAGAACGAAATGGCAGTGCAATGCTaGAGGGCAGAAAAGCTTCACTCTTATCTACCTCAGACATCACTG +
Preference number: 1 (lower is better)
Translates to: EETRGEMENEMAVQC*RAEKLHSYLPQTSL
Trigger: CAGTGATGTCTGAGGTAGATAAGAGTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 90 bp CCAAGTCAGCACACAGTGTTCACTAAGATGCAAGAGTTTGGGGAATaGCAAAGACTGGGAGGATCCAACTGTGTGATCATACTGAGGCTC +
Preference number: 1 (lower is better)
Translates to: PSQHTVFTKMQEFGE*QRLGGSNCVIILRL
Trigger: GAGCCTCAGTATGATCACACAGTTGGATCCTCCCAGTCTTTGGCATTCCCCAAACTCTTGCATCTTAGTGAACACTGTGTGCTGACTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR CCA 90 bp CACCGAGGAGGTGTGCACCCAAGTTTGATTTCACGGTTGGACTGCTaGTATTGGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCT +
Preference number: 1 (lower is better)
Translates to: HRGGVHPSLISRLDC*YWKCRGSLSWQMFS
Trigger: AGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGAAATCAAACTTGGGTGCACACCTCCTCGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 90 bp GTCTTTAACAGCCTGAAGAGACACGAGGGGAGATGGAGAACGAAATaGCAGTGCAATGCTGAAGGGCAGAAAAGCTTCACTCTTATCTAC +
Preference number: 1 (lower is better)
Translates to: VFNSLKRHEGRWRTK*QCNAEGQKSFTLIY
Trigger: GTAGATAAGAGTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 90 bp TCTGCAGTCAATGTTTTTCTTGCTCTGCTGGTAATAATAGAATTTTaGAAGAGACAGCATGTGCGAGCAGCCAGGTCCCACAGGCCTCTC +
Preference number: 1 (lower is better)
Translates to: SAVNVFLALLVIIEF*KRQHVRAARSHRPL
Trigger: GAGAGGCCTGTGGGACCTGGCTGCTCGCACATGCTGTCTCTTCCAAAATTCTATTATTACCAGCAGAGCAAGAAAAACATTGACTGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR CCA 90 bp GGAGGTGTGCACCCAAGTTTGATTTCACGGTTGGACTGCTGGTATTaGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACT +
Preference number: 1 (lower is better)
Translates to: GGVHPSLISRLDCWY*KCRGSLSWQMFSLT
Trigger: AGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGAAATCAAACTTGGGTGCACACCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 90 bp CTCTTATCTACCTCAGACATCACTGGACTGTGGGAAGCACTCTCCTaGATCCCCATAAGCCACAAAGGTAGTTTAGAGTTTCTACTAATC +
Preference number: 1 (lower is better)
Translates to: LLSTSDITGLWEALS*IPISHKGSLEFLLI
Trigger: GATTAGTAGAAACTCTAAACTACCTTTGTGGCTTATGGGGATTCAGGAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTAGATAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR GCA 90 bp GTGCACCCAAGTTTGATTTCACGGTTGGACTGCTGGTATTGGAAATaGCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAA +
Preference number: 1 (lower is better)
Translates to: VHPSLISRLDCWYWK*RGSLSWQMFSLTVK
Trigger: TTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGAAATCAAACTTGGGTGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 90 bp TCTCTAACTGTGAAAGCCACTCAAGTAAAACCATTCTTAGCACCTTaGGCTCAAACAGAACCAGAGGGTCCAATAACTTGGTCATTGCTT +
Preference number: 1 (lower is better)
Translates to: SLTVKATQVKPFLAP*AQTEPEGPITWSLL
Trigger: AAGCAATGACCAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGTGCTAAGAATGGTTTTACTTGAGTGGCTTTCACAGTTAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 90 bp ATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTaGATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGA +
Preference number: 1 (lower is better)
Translates to: ISYVFLYQSFCSLQI*ISRNQFPDSWCTQR
Trigger: TCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp GGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTACAAAAGCCAAGGGCTaGCCAGGCGGTGATGAGACA +
Preference number: 2 (lower is better)
Translates to: GAGPSLRLPFSDSWGAGLTKAKG*PGGDET
Trigger: TGTCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGT...AAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp GCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTAAGGGAGGGGTGGCATTaGCAGGAGCTTCTTGAACTG +
Preference number: 2 (lower is better)
Translates to: ARPHSCSSDQARSGPMALREGWH*QELLEL
Trigger: CAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCT...TAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp GACCAGGCCCGATCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCGATACACAATGTTGGTaGAGGCCTCCCTCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: DQARSGPMALANRRATFSDTQCW*RPPSSS
Trigger: AGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATC...GGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGATCGGGCCTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 90 bp TCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCACATaGATAGGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCC +
Preference number: 2 (lower is better)
Translates to: SGPMALANRRATFST*IGAGPSLRLPFSDS
Trigger: GGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
3UTR-3UTR TCA 90 bp GTAGAAGGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTGGACTTCACCACCAAGAAAGCAAGTGTaGATGGGGCCTGGGGTGCCC +
Preference number: 2 (lower is better)
Translates to: VEGTQGRMATGLPAWTSPPRKQV*MGPGVP
Trigger: GGGCACCCCAGGCCCCATTCACACTTGCTTTCTTGG...TGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CACTTGGTCAAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCACAAAAGCCAAGGGCTaGCCAGGCGGTGATGAGACA +
Preference number: 2 (lower is better)
Translates to: HLVKVDPQLGLLRPEEAVTKAKG*PGGDET
Trigger: TGTCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGT...GACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTTGACCAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 90 bp GGCCTGCTGCGACCAGAGGAAGCGGTCACACTTCTCAAGCATGCCTaGTATCAGCGCTCTCTGCCTTCTCTCAGCAATCCTCAGGATATC +
Preference number: 2 (lower is better)
Translates to: GLLRPEEAVTLLKHA*YQRSLPSLSNPQDI
Trigger: GATATCCTGAGGATTGCTGAGAGAAGGCAGAGAGCGCTGATACAAGGCATGCTTGAGAAGTGTGACCGCTTCCTCTGGTCGCAGCAGGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 90 bp CCTTCTGTGCCAAAGACCTCTGCAGGGTCGAGAGCAGGATTCCACTaGGTCAAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAA +
Preference number: 2 (lower is better)
Translates to: PSVPKTSAGSRAGFH*VKVDPQLGLLRPEE
Trigger: TTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTTGACCAAGTGGAATCCTGCTCTCGACCCTGCAGAGGTCTTTGGCACAGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCCAGGCTGCTTCCAGTaGAGGTCAGCCCACTGCTTC +
Preference number: 2 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTPGCFQ*RSAHCF
Trigger: GAAGCAGTGGGCTGACCTTCACTGGAAGCAGCCTGG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp ATGTCATTCAGATACACAATGTTGGTGAAGGCCTCCCTCCTCCTCTCCAGCTCCCCAGGCTGCTTCCAGTaGAGGTCAGCCCACTGCTTC +
Preference number: 2 (lower is better)
Translates to: MSFRYTMLVKASLLLSSSPGCFQ*RSAHCF
Trigger: GAAGCAGTGGGCTGACCTTCACTGGAAGCAGCCTGG...GGAGCTGGAGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAATGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp GGATTTCTGGAGAGAGCTGCTGTGAAGCCCGGTCCACATGCCCACCTACGCTTTGATACACAATGTTGGTaGAGGCCTCCCTCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: GFLERAAVKPGPHAHLRFDTQCW*RPPSSS
Trigger: AGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATC...AAAGCGTAGGTGGGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CTTGGTCAAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCACACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTA +
Preference number: 2 (lower is better)
Translates to: LGQSRSPTRPAATRGSGHTGLPA*TSPDCL
Trigger: TAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGT...GTGACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTTGACCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 90 bp CTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTaGGTCTGTAGTAGATGTAGGAGAAGCTTCCATTCCTCCAAGGTC +
Preference number: 2 (lower is better)
Translates to: LRLPFSDSWGAGLVL*VCSRCRRSFHSSKV
Trigger: GACCTTGGAGGAATGGAAGCTTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
3UTR-3UTR GCA 90 bp GTAGAAGGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTGGACTTCACCACAGAGGGCAGGTGACTaGACTCACTTCCTCTTCATG +
Preference number: 2 (lower is better)
Translates to: VEGTQGRMATGLPAWTSPQRAGD*THFLFM
Trigger: CATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTG...TGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR-3UTR CCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGATGCAGCAGCATGTTTTaGGGTGTCCTCTTCCCTTCT +
Preference number: 2 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRCSSMF*GVLFPS
Trigger: AGAAGGGAAGAGGACACCCCAAAACATGCTGCTGCA...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TTTTCTGACAACTCAAGAGCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGAACAAAAGCCAAGGGCTaGCCAGGCGGTGATGAGACA +
Preference number: 2 (lower is better)
Translates to: FSDNSRARPHSCSSDQARTKAKG*PGGDET
Trigger: TGTCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGT...TCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp GTGCTTGGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATTCAAGTCTTAAACCAGGCTGCTTCCAGTaGAGGTCAGCCCACTGCTTC +
Preference number: 2 (lower is better)
Translates to: VLGGASWDTAKSSHSSLKPGCFQ*RSAHCF
Trigger: GAAGCAGTGGGCTGACCTTCACTGGAAGCAGCCTGG...TTTAAGACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR GCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCTCCTCTTCCCTTCTGTaGCAAAGACCTCTGCAGGGT +
Preference number: 2 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGSSSLL*QRPLQG
Trigger: ACCCTGCAGAGGTCTTTGGCACAGAAGGGAAGAGGA...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCTGCAGCAGCATGTTTTaGGGTGTCCTCTTCCCTTCT +
Preference number: 2 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFCSSMF*GVLFPS
Trigger: AGAAGGGAAGAGGACACCCCAAAACATGCTGCTGCA...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCGAGGGCGTGAGCGTTTaGGTCACCCACTCTCCAAAA +
Preference number: 2 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTEGVSV*VTHSPK
Trigger: TTTTGGAGAGTGGGTGACCCAAACGCTCACGCCCTC...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CGTTTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGAGGGCGTGAGCGTTTaGGTCACCCACTCTCCAAAA +
Preference number: 2 (lower is better)
Translates to: RLVTPGELALCSWSVVDVEGVSV*VTHSPK
Trigger: TTTTGGAGAGTGGGTGACCCAAACGCTCACGCCCTC...TACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp AGGCTTATGTCATTCAGATACACAATGTTGGTGAAGGCCTCCCTCCTCCTCTCCCCGTTTAGTGACTCCTaGGGAGCTGGCCTTGTGCTC +
Preference number: 2 (lower is better)
Translates to: RLMSFRYTMLVKASLLLSPFSDS*GAGLVL
Trigger: GAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGG...GGAGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAATGACATAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp GTAGAAGGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTGGACTTCACCACACTGTACTTGTGCTTaGTGGAGCATCATGGGACAC +
Preference number: 2 (lower is better)
Translates to: VEGTQGRMATGLPAWTSPHCTCA*WSIMGH
Trigger: GTGTCCCATGATGCTCCACCAAGCACAAGTACAGTG...TGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp ATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCCACTCACCACATCCGGGAGCCTaGGCGGGCGCAGTAGATCAC +
Preference number: 2 (lower is better)
Translates to: MPGKSFMANVFSNCESHSPHPGA*AGAVDH
Trigger: GTGATCTACTGCGCCCGCCCAGGCTCCCGGATGTGG...TGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR CAA 90 bp GATCTTGCAGTGATCACAGGGAGGGGTGGCATTGACAGGAGCTTCTaGAACTGGTGTGTACTGAGCACTTCCCCGTCAAAGTTCACTTCC +
Preference number: 2 (lower is better)
Translates to: DLAVITGRGGIDRSF*NWCVLSTSPSKFTS
Trigger: GGAAGTGAACTTTGACGGGGAAGTGCTCAGTACACACCAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCTGTGATCACTGCAAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp GCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAGCTTCCATTCCTCCGATACACAATGTTGGTaGAGGCCTCCCTCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: AGLVLLVCSRCRRSFHSSDTQCW*RPPSSS
Trigger: AGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATC...GGAGGAATGGAAGCTTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp AAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCACACTTCTCGCTGCTGTGAGTTCTTaGAGCCTGTCTTCTTTAGGA +
Preference number: 2 (lower is better)
Translates to: KVDPQLGLLRPEEAVTLLAAVSS*SLSSLG
Trigger: TCCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGC...GAGAAGTGTGACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR GCA 90 bp TTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGATCCTCTTCCCTTCTGTaGCAAAGACCTCTGCAGGGT +
Preference number: 2 (lower is better)
Translates to: LVTPGELALCSWSVVDVGSSSLL*QRPLQG
Trigger: ACCCTGCAGAGGTCTTTGGCACAGAAGGGAAGAGGA...TCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTAGCTAACCAATTCCCTGATTCATaGTGTACACAAAGAATCCGA +
Preference number: 2 (lower is better)
Translates to: PHSCSSDQARSGPMALANQFPDS*CTQRIR
Trigger: TCGGATTCTTTGTGTACACCATGAATCAGGGAATTG...GTTAGCTAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGGTCCCGAGGGCGTGAGCGTTTaGGTCACCCACTCTCCAAAA +
Preference number: 2 (lower is better)
Translates to: LKSTHSVPSTTLSIPPGPEGVSV*VTHSPK
Trigger: TTTTGGAGAGTGGGTGACCCAAACGCTCACGCCCTC...GGGACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CGTTTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTA +
Preference number: 2 (lower is better)
Translates to: RLVTPGELALCSWSVVDVTGLPA*TSPDCL
Trigger: TAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGT...TACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CGTTTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTACTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGC +
Preference number: 2 (lower is better)
Translates to: RLVTPGELALCSWSVVDVLGGAS*DTAKSS
Trigger: GCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAG...TACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp GCTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGGTCCAGTGTGAATGGGGCCTaGGGTGCCCTTCATCATCCA +
Preference number: 2 (lower is better)
Translates to: AEVNTFSSKHNVVNSARSSVNGA*GALHHP
Trigger: TGGATGATGAAGGGCACCCCAGGCCCCATTCACACT...GGACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR GCA 90 bp CAGGTTCTGGTGAACTTTTCTGACAACTCAAGAGCCAGACCACACTCCTGTAGCTCCTCTTCCCTTCTGTaGCAAAGACCTCTGCAGGGT +
Preference number: 2 (lower is better)
Translates to: QVLVNFSDNSRARPHSCSSSSLL*QRPLQG
Trigger: ACCCTGCAGAGGTCTTTGGCACAGAAGGGAAGAGGA...GCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR GCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCATCCACTGTACTTGTaGTTGGTGGAGCATCATGGG +
Preference number: 2 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTHPLYL*LVEHHG
Trigger: CCCATGATGCTCCACCAAGCACAAGTACAGTGGATG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCTGCAGCAGCATGTTTTaGGGTGTCCTCTTCCCTTCT +
Preference number: 2 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSCSSMF*GVLFPS
Trigger: AGAAGGGAAGAGGACACCCCAAAACATGCTGCTGCA...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGACAAAAGCCAAGGGCTaGCCAGGCGGTGATGAGACA +
Preference number: 2 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRETKAKG*PGGDET
Trigger: TGTCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCTACCTCAGACATCACTaGACTGTGGGAAGCACTCTC +
Preference number: 2 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSYLRHH*TVGSTL
Trigger: GAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTA...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGAGCCCACTGCTTCCTTaGGAAACTCTGAGGTCACAG +
Preference number: 2 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRESPLLP*ETLRSQ
Trigger: CTGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCTTCCTTGAGAAACTCTaGGGTCACAGAGCCACAAAA +
Preference number: 2 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSFLEKL*GHRATK
Trigger: TTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAA...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp CAGACAGAGGGTAAGATATCCAGGCCAGAAACCGTAAGACCTACAGATGTCAGTATGGCAGTGCAATGCTaGAGGGCAGAAAAGCTTCAC +
Preference number: 2 (lower is better)
Translates to: QTEGKISRPETVRPTDVSMAVQC*RAEKLH
Trigger: GTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCAT...ACTGACATCTGTAGGTCTTACGGTTTCTGGCCTGGATATCTTACCCTCTGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACTTCCTTGAGAAACTCTaGGGTCACAGAGCCACAAAA +
Preference number: 2 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHFLEKL*GHRATK
Trigger: TTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAA...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp TTTACGCACAAAGCTAGAAACACTGTCTTTAACAGCCTGAAGAGACACGAGGGGGCTGTAAGGTCCAGCTaGGACTTCAAATGCTCCAAC +
Preference number: 2 (lower is better)
Translates to: FTHKARNTVFNSLKRHEGAVRSS*DFKCSN
Trigger: GTTGGAGCATTTGAAGTCTCAGCTGGACCTTACAGC...CCCCTCGTGTCTCTTCAGGCTGTTAAAGACAGTGTTTCTAGCTTTGTGCGTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR GCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCTCCTCTTCCCTTCTGTaGCAAAGACCTCTGCAGGGT +
Preference number: 2 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSSSSLL*QRPLQG
Trigger: ACCCTGCAGAGGTCTTTGGCACAGAAGGGAAGAGGA...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TTTACGCACAAAGCTAGAAACACTGTCTTTAACAGCCTGAAGAGACACGAGGGGTACCTCAGACATCACTaGACTGTGGGAAGCACTCTC +
Preference number: 2 (lower is better)
Translates to: FTHKARNTVFNSLKRHEGYLRHH*TVGSTL
Trigger: GAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTA...CCCCTCGTGTCTCTTCAGGCTGTTAAAGACAGTGTTTCTAGCTTTGTGCGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp AAATGGCAGTGCAATGCTGAAGGGCAGAAAAGCTTCACTCTTATCTACCTCAGATCACGGTTGGACTGCTaGTATTGGAAATGCCGGGGA +
Preference number: 2 (lower is better)
Translates to: KWQCNAEGQKSFTLIYLRSRLDC*YWKCRG
Trigger: TCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGA...TCTGAGGTAGATAAGAGTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp GGAAGGATGGCCACTGGTCTTCCGGCCTGGACTTCACCAGACTGTCTAGATAGGGTAATAATAGAATTTTaGAAGAGACAGCATGTGCGA +
Preference number: 2 (lower is better)
Translates to: GRMATGLPAWTSPDCLDRVIIEF*KRQHVR
Trigger: TCGCACATGCTGTCTCTTCCAAAATTCTATTATTAC...CCTATCTAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR CAA 90 bp AGGAGGTGTGCACCCAAGTTTGATTTCACGGTTGGACTGCTGGTATaGGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAAC +
Preference number: 2 (lower is better)
Translates to: RRCAPKFDFTVGLLV*EMPGKSFMANVFSN
Trigger: GTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGAAATCAAACTTGGGTGCACACCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 90 bp ATCTGCAGTCAATGTTTTTCTTGCTCTGCTGGTAATAATAGAATTTaGGAAGAGACAGCATGTGCGAGCAGCCAGGTCCCACAGGCCTCT +
Preference number: 2 (lower is better)
Translates to: ICSQCFSCSAGNNRI*EETACASSQVPQAS
Trigger: AGAGGCCTGTGGGACCTGGCTGCTCGCACATGCTGTCTCTTCCAAAATTCTATTATTACCAGCAGAGCAAGAAAAACATTGACTGCAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTATCACAGGTTCTGGTaGACTTTTCTGACAACTCAA +
Preference number: 2 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTYHRFW*TFLTTQ
Trigger: TTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATA...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATCTGTCTTTAACAGCCTaGAGAGACACGAGGGGAGAT +
Preference number: 2 (lower is better)
Translates to: SSCTKASAPYRSASVETNLSLTA*RDTRGD
Trigger: ATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGACAG...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCTGCAGCAGCATGTTTTaGGGTGTCCTCTTCCCTTCT +
Preference number: 2 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSCSSMF*GVLFPS
Trigger: AGAAGGGAAGAGGACACCCCAAAACATGCTGCTGCA...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACACAAAAGCCAAGGGCTaGCCAGGCGGTGATGAGACA +
Preference number: 2 (lower is better)
Translates to: LQFTILVMSSCTKASAPYTKAKG*PGGDET
Trigger: TGTCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGT...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TCCATTGCTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGATGGAGAACGAAATaGCAGTGCAATGCTGAAGGG +
Preference number: 2 (lower is better)
Translates to: SIAEVNTFSSKHNVVNSARWRTK*QCNAEG
Trigger: CCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCT...GGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR GCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACTCCTCTTCCCTTCTGTaGCAAAGACCTCTGCAGGGT +
Preference number: 2 (lower is better)
Translates to: LQFTILVMSSCTKASAPYSSSLL*QRPLQG
Trigger: ACCCTGCAGAGGTCTTTGGCACAGAAGGGAAGAGGA...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TCAGCAATCCTCAGGATATCACAGGTTCTGGTGAACTTTTCTGACAACTCAAGATGCAGCAGCATGTTTTaGGGTGTCCTCTTCCCTTCT +
Preference number: 2 (lower is better)
Translates to: SAILRISQVLVNFSDNSRCSSMF*GVLFPS
Trigger: AGAAGGGAAGAGGACACCCCAAAACATGCTGCTGCA...TCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATATCCTGAGGATTGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAACAAAAGCCAAGGGCTaGCCAGGCGGTGATGAGACA +
Preference number: 2 (lower is better)
Translates to: QFTILVMSSCTKASAPYRTKAKG*PGGDET
Trigger: TGTCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGT...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCCACTCAAGTGAGGGTCCAATAACTTaGTCATTGCTTCTGCTGTCG +
Preference number: 2 (lower is better)
Translates to: PGKSFMANVFSNCESHSSEGPIT*SLLLLS
Trigger: CGACAGCAGAAGCAATGACCAAGTTATTGGACCCTC...ACTTGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TTGATGAATTTCTTTCTCCTTCCTCTTCATGTGCTCGGTCAGCATCCTTGGATTTCTCTTCATTCCTATTaGCACCACAGCCCTGCTCTG +
Preference number: 2 (lower is better)
Translates to: LMNFFLLPLHVLGQHPWISLHSY*HHSPAL
Trigger: CAGAGCAGGGCTGTGGTGCCAATAGGAATGAAGAGA...AATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGGAGAAAGAAATTCATCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp AAATGGCAGTGCAATGCTGAAGGGCAGAAAAGCTTCACTCTTATCTACCTCAGATTCCTTGAGAAACTCTaGGGTCACAGAGCCACAAAA +
Preference number: 2 (lower is better)
Translates to: KWQCNAEGQKSFTLIYLRFLEKL*GHRATK
Trigger: TTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAA...TCTGAGGTAGATAAGAGTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp TTGATGAATTTCTTTCTCCTTCCTCTTCATGTGCTCGGTCAGCATCCTTGGATTCTCCTCTTCCTGGTGTaGGGCAAATTCTTTAAGCCT +
Preference number: 2 (lower is better)
Translates to: LMNFFLLPLHVLGQHPWILLFLV*GKFFKP
Trigger: AGGCTTAAAGAATTTGCCTCACACCAGGAAGAGGAG...AATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGGAGAAAGAAATTCATCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TTGATGAATTTCTTTCTCCTTCCTCTTCATGTGCTCGGTCAGCATCCTTGGATTAGATGGAGAACGAAATaGCAGTGCAATGCTGAAGGG +
Preference number: 2 (lower is better)
Translates to: LMNFFLLPLHVLGQHPWIRWRTK*QCNAEG
Trigger: CCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCT...AATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGGAGAAAGAAATTCATCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TATTGGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAAGACACGAGGGGAGATaGAGAACGAAATGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: YWKCRGSLSWQMFSLTVKRHEGR*RTKWQC
Trigger: GCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCT...TTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCCACTCAAGTCTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCA +
Preference number: 2 (lower is better)
Translates to: PGKSFMANVFSNCESHSSLGQHP*IQKALS
Trigger: TGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAG...ACTTGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TTCTCTAACTGTGAAAGCCACTCAAGTAAAACCATTCTTAGCACCTTGGGCTCAGAGGGTCCAATAACTTaGTCATTGCTTCTGCTGTCG +
Preference number: 2 (lower is better)
Translates to: FSNCESHSSKTILSTLGSEGPIT*SLLLLS
Trigger: CGACAGCAGAAGCAATGACCAAGTTATTGGACCCTC...TGAGCCCAAGGTGCTAAGAATGGTTTTACTTGAGTGGCTTTCACAGTTAGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 90 bp TTCTCTAACTGTGAAAGCCACTCAAGTAAAACCATTCTTAGCACCTaGGGCTCAAACAGAACCAGAGGGTCCAATAACTTGGTCATTGCT +
Preference number: 2 (lower is better)
Translates to: FSNCESHSSKTILST*GSNRTRGSNNLVIA
Trigger: AGCAATGACCAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGTGCTAAGAATGGTTTTACTTGAGTGGCTTTCACAGTTAGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGACTGTCTTTAACAGCCTaGAGAGACACGAGGGGAGAT +
Preference number: 2 (lower is better)
Translates to: QFTILVMSSCTKASAPYRLSLTA*RDTRGD
Trigger: ATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGACAG...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp CCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCCACTCAAGTTACGCTTTCCATTGCTaGAGTCAACACATTCAGTTC +
Preference number: 2 (lower is better)
Translates to: PGKSFMANVFSNCESHSSYAFHC*SQHIQF
Trigger: GAACTGAATGTGTTGACTTCAGCAATGGAAAGCGTA...ACTTGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTAAGACACGAGGGGAGATaGAGAACGAAATGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLRHEGR*RTKWQC
Trigger: GCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCT...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp TCAGCAATCCTCAGGATATCACAGGTTCTGGTGAACTTTTCTGACAACTCAAGACTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCA +
Preference number: 2 (lower is better)
Translates to: SAILRISQVLVNFSDNSRLGQHP*IQKALS
Trigger: TGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAG...TCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATATCCTGAGGATTGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTATTCCTTGAGAAACTCTaGGGTCACAGAGCCACAAAA +
Preference number: 2 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLFLEKL*GHRATK
Trigger: TTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAA...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR TCA 90 bp TTGATGAATTTCTTTCTCCTTCCTCTTCATGTGCTCGGTCAGCATCCTTGGATTCAACAGGGAAAGATGTaGGATTTTTCCATTAAAGTG +
Preference number: 2 (lower is better)
Translates to: LMNFFLLPLHVLGQHPWIQQGKM*DFSIKV
Trigger: CACTTTAATGGAAAAATCTCACATCTTTCCCTGTTG...AATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGGAGAAAGAAATTCATCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACCAATTCCCTGATTCATaGTGTACACAAAGAATCCGA +
Preference number: 2 (lower is better)
Translates to: LQFTILVMSSCTKASAPYQFPDS*CTQRIR
Trigger: TCGGATTCTTTGTGTACACCATGAATCAGGGAATTG...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp CAGAAGGGACGGAGCCATCCAGTAACTGTAACCCCGTaGGCAGGTCTCCTTCTTCCAGCTCCGTGTAGGCAG +
Preference number: 3 (lower is better)
Translates to: QKGRSHPVTVTP*AGLLLPAPCRQ
Trigger: CTGCCTACACGGAGCTGGAAGAAGGAGACCTGCCCACGGGGTTACAGTTACTGGATGGCTCCGTCCCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp GCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTAGCTGGCCTTGTGCTCTaGGTCTGTAGTAGATGTAGG +
Preference number: 3 (lower is better)
Translates to: ARPHSCSSDQARSGPMALAGLVL*VCSRCR
Trigger: CCTACATCTACTACAGACCAAGAGCACAAGGCCAGC...TAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
3UTR CCA 72 bp GCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTaGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGA +
Preference number: 3 (lower is better)
Translates to: AGPSLRLPFSDS*GAGLVLLVCSR
Trigger: TCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
3UTR CCA 72 bp CGCCAGGTCCCTCTGAAGGCTGTTTGTGATGGCGTATaGAGAGCATACTCGAAAACGGTCAGCCGAGGGCTC +
Preference number: 3 (lower is better)
Translates to: RQVPLKAVCDGV*RAYSKTVSRGL
Trigger: GAGCCCTCGGCTGACCGTTTTCGAGTATGCTCTCCATACGCCATCACAAACAGCCTTCAGAGGGACCTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TCTGGTTGTAGAAGGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTGGACAGAGGGCGTGAGCGTTaGGGTCACCCACTCTCCAAA +
Preference number: 3 (lower is better)
Translates to: SGCRRNSRKDGHWSSGLDRGRER*GHPLSK
Trigger: TTTGGAGAGTGGGTGACCCAAACGCTCACGCCCTCT...GTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTACAACCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp CACTTGGTCAAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCTCAGGGATCCACCCATaGTCCCCTTCCATCAGGCTT +
Preference number: 3 (lower is better)
Translates to: HLVKVDPQLGLLRPEEAVSGIHP*SPSIRL
Trigger: AAGCCTGATGGAAGGGGACAATGGGTGGATCCCTGA...GACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTTGACCAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp GGAAGGATGGCCACTGGTCTTCCGGCCTGGACTTCACCAGACTGTCTAGATAGGTCAGGGATCCACCCATaGTCCCCTTCCATCAGGCTT +
Preference number: 3 (lower is better)
Translates to: GRMATGLPAWTSPDCLDRSGIHP*SPSIRL
Trigger: AAGCCTGATGGAAGGGGACAATGGGTGGATCCCTGA...CCTATCTAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCACAGCCCACTGCTTCCTaGAGAAACTCTGAGGTCACA +
Preference number: 3 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPQPTAS*RNSEVT
Trigger: TGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCTG...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp AAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCACACTTCTCGCCACATTCTCCACATaGATAGGGGCTGGCCCATCA +
Preference number: 3 (lower is better)
Translates to: KVDPQLGLLRPEEAVTLLATFST*IGAGPS
Trigger: TGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGC...GAGAAGTGTGACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp GAAACGACAAGCCAGGATTTCTGGAGAGAGCTGCTGTaGAGCCCGGTCCACATGCCCACCTACGCTTTCCAT +
Preference number: 3 (lower is better)
Translates to: ETTSQDFWRELL*SPVHMPTYAFH
Trigger: ATGGAAAGCGTAGGTGGGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAATCCTGGCTTGTCGTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 72 bp GGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTGTaGTCTTGGTCTGTAGTAGATGTAGGAGAAGCTTCC +
Preference number: 3 (lower is better)
Translates to: GSRLVTPGELAL*SWSVVDVGEAS
Trigger: GGAAGCTTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
3UTR GCA 72 bp TTTCTCCTCAGTGTCCTCCTCCAGAGGGCAGGTGACTaGACTCACTTCCTCTTCATGTGCTCGGTCAGCATC +
Preference number: 3 (lower is better)
Translates to: FLLSVLLQRAGD*THFLFMCSVSI
Trigger: GATGCTGACCGAGCACATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGGAGGACACTGAGGAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR CCA 72 bp CCTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACACTGCCAAAAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: PGVPFIIHCTCA*WSIMGHCQKQP
Trigger: TGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TCTGGTTGTAGAAGGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTGGACCAGCCCACTGCTTCCTaGAGAAACTCTGAGGTCACA +
Preference number: 3 (lower is better)
Translates to: SGCRRNSRKDGHWSSGLDQPTAS*RNSEVT
Trigger: TGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCTG...GTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTACAACCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TTTTCTGACAACTCAAGAGCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGATCAGGGATCCACCCATaGTCCCCTTCCATCAGGCTT +
Preference number: 3 (lower is better)
Translates to: FSDNSRARPHSCSSDQARSGIHP*SPSIRL
Trigger: AAGCCTGATGGAAGGGGACAATGGGTGGATCCCTGA...TCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp GGAAGGATGGCCACTGGTCTTCCGGCCTGGACTTCACCAGACTGTCTAGATAGGCGCTGCTGTGAGTTCTaGAAGCCTGTCTTCTTTAGG +
Preference number: 3 (lower is better)
Translates to: GRMATGLPAWTSPDCLDRRCCEF*KPVFFR
Trigger: CCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGCG...CCTATCTAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp GGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTAGATAGGCCAAGAACT +
Preference number: 3 (lower is better)
Translates to: GTQGRMATGLPA*TSPDCLDRPRT
Trigger: AGTTCTTGGCCTATCTAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp GGGGTGCCCTTCATCATCCACTGTACTTGTGCTTGGTaGAGCATCATGGGACACTGCCAAAAGCAGCCATTC +
Preference number: 3 (lower is better)
Translates to: GVPFIIHCTCAW*SIMGHCQKQPF
Trigger: GAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp AGGCTGCTTCCAGTGAAGGTCAGCCCACTGCTTCCTTaGGAAACTCTGAGGTCACAGAGCCACAAAAGCCAA +
Preference number: 3 (lower is better)
Translates to: RLLPVKVSPLLP*ETLRSQSHKSQ
Trigger: TTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCTGACCTTCACTGGAAGCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 72 bp ATTTCTGGAGAGAGCTGCTGTGAAGCCCGGTCCACATaGCCACCTACGCTTTCCATTGCTGAAGTCAACACA +
Preference number: 3 (lower is better)
Translates to: ISGESCCEARST*PPTLSIAEVNT
Trigger: TGTGTTGACTTCAGCAATGGAAAGCGTAGGTGGGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 72 bp GGCCAAGAACTGAGCAGGATGATGACGGCAAAGCTGTaGGATGTCGGAGGGCGAAATGGACGGATAAAACTT +
Preference number: 3 (lower is better)
Translates to: GQELSRMMTAKL*DVGGRNGRIKL
Trigger: AAGTTTTATCCGTCCATTTCGCCCTCCGACATCGCACAGCTTTGCCGTCATCATCCTGCTCAGTTCTTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp CACTCACTTCCTCTTCATGTGCTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCAGCTCGGGGCTTCCGT +
Preference number: 3 (lower is better)
Translates to: HSLPLHVLGQHP*IQKALSARGFR
Trigger: ACGGAAGCCCCGAGCTGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGTGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR CCA 72 bp TCTGGTTGTAGAAGGAACTCAAGGAAGGATGGCCACTaGTCTTCCGGCCTGGACTTCACCAGACTGTCTAGA +
Preference number: 3 (lower is better)
Translates to: SGCRRNSRKDGH*SSGLDFTRLSR
Trigger: TCTAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTACAACCAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCAGCCCACTGCTTCCTaGAGAAACTCTGAGGTCACA +
Preference number: 3 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTQPTAS*RNSEVT
Trigger: TGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCTG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp CGATCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCACATTGATATTCAGATACACAATGTaGGTGAAGGCCTCCCTCCTC +
Preference number: 3 (lower is better)
Translates to: RSGPMALANRRATFSTLIFRYTM*VKASLL
Trigger: GAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAA...TATCAATGTGGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp TTGTCAATTCCGCCAGGTCCCTCTGAAGGCTGTTTGTaGTGGCGTATGGAGAGCATACTCGAAAACGGTCAG +
Preference number: 3 (lower is better)
Translates to: LSIPPGPSEGCL*WRMESILENGQ
Trigger: CTGACCGTTTTCGAGTATGCTCTCCATACGCCATCACAAACAGCCTTCAGAGGGACCTGGCGGAATTGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp TCCAAGCACAACGTTGTCAATTCCGCCAGGTCCCTCTaGAGGCTGTTTGTGATGGCGTATGGAGAGCATACT +
Preference number: 3 (lower is better)
Translates to: SKHNVVNSARSL*RLFVMAYGEHT
Trigger: AGTATGCTCTCCATACGCCATCACAAACAGCCTTCAGAGGGACCTGGCGGAATTGACAACGTTGTGCTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp AGCCCGGTCCACATGCCCACCTACGCTTTCCATTGCTaGAGTCAACACATTCAGTTCCAAGCACAACGTTGT +
Preference number: 3 (lower is better)
Translates to: SPVHMPTYAFHC*SQHIQFQAQRC
Trigger: ACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAATGGAAAGCGTAGGTGGGCATGTGGACCGGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp GTGCGATGTCGGAGGGCGAAATGGACGGATAAAACTTaGTGCAAGCTCGAAGGGCTGACTCCCCAAATCTAT +
Preference number: 3 (lower is better)
Translates to: VRCRRAKWTDKT*CKLEGLTPQIY
Trigger: ATAGATTTGGGGAGTCAGCCCTTCGAGCTTGCATCAAGTTTTATCCGTCCATTTCGCCCTCCGACATCGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp CAACTGTGTGATCATACTGAGGCTCTGATCTTGCAGTaGTCACAGGGAGGGGTGGCATTGACAGGAGCTTCT +
Preference number: 3 (lower is better)
Translates to: QLCDHTEALILQ*SQGGVALTGAS
Trigger: AGAAGCTCCTGTCAATGCCACCCCTCCCTGTGATCACTGCAAGATCAGAGCCTCAGTATGATCACACAGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR GCA 72 bp CAGAGGGCAGGTGACTGCACTCACTTCCTCTTCATGTaGTCGGTCAGCATCCTTGGATTCAAAAGGCTCTTT +
Preference number: 3 (lower is better)
Translates to: QRAGDCTHFLFM*SVSILGFKRLF
Trigger: AAAGAGCCTTTTGAATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR CCA 72 bp AGCCTGAAGAGACACGAGGGGAGATGGAGAACGAAATaGCAGTGCAATGCTGAAGGGCAGAAAAGCTTCACT +
Preference number: 3 (lower is better)
Translates to: SLKRHEGRWRTK*QCNAEGQKSFT
Trigger: AGTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCTCTTCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp ACTGTCTTTAACAGCCTGAAGAGACACGAGGGGAGATaGAGAACGAAATGGCAGTGCAATGCTGAAGGGCAG +
Preference number: 3 (lower is better)
Translates to: TVFNSLKRHEGR*RTKWQCNAEGQ
Trigger: CTGCCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp TTTCTCCTTCCTCTTCATGTGCTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCAGCTCGGGGCTTCCGT +
Preference number: 3 (lower is better)
Translates to: FLLPLHVLGQHP*IQKALSARGFR
Trigger: ACGGAAGCCCCGAGCTGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGGAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp ATATCACAGGTTCTGGTGAACTTTTCTGACAACTCAAGAGCCAGACCACACTCCGCCACATTCTCCACATaGATAGGGGCTGGCCCATCA +
Preference number: 3 (lower is better)
Translates to: ISQVLVNFSDNSRARPHSATFST*IGAGPS
Trigger: TGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGC...GGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
3UTR TCA 72 bp CGAGGGGAGATGGAGAACGAAATGGCAGTGCAATGCTaGAGGGCAGAAAAGCTTCACTCTTATCTACCTCAG +
Preference number: 3 (lower is better)
Translates to: RGEMENEMAVQC*RAEKLHSYLPQ
Trigger: CTGAGGTAGATAAGAGTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCTCCCCTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR TCA 72 bp GGCTCACTGAGGTTGCTTACAGGGTCACAGGTTATCTaGCCTCCAGCTTCTTCAGTGACTAAAGAGACCCTT +
Preference number: 3 (lower is better)
Translates to: GSLRLLTGSQVI*PPASSVTKETL
Trigger: AAGGGTCTCTTTAGTCACTGAAGAAGCTGGAGGTCAGATAACCTGTGACCCTGTAAGCAACCTCAGTGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 72 bp AACTTTCATGCGATGAGATGGAGCTTCTTCTGCTGCTaGACGCCGACTCCAAAGGCTCGAACCTTAAGATCA +
Preference number: 3 (lower is better)
Translates to: NFHAMRWSFFCC*TPTPKARTLRS
Trigger: TGATCTTAAGGTTCGAGCCTTTGGAGTCGGCGTGCAGCAGCAGAAGAAGCTCCATCTCATCGCATGAAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TCCATTGCTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCGCTGGCCTTGTGCTCTaGGTCTGTAGTAGATGTAGG +
Preference number: 3 (lower is better)
Translates to: SIAEVNTFSSKHNVVNSAAGLVL*VCSRCR
Trigger: CCTACATCTACTACAGACCAAGAGCACAAGGCCAGC...GGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAATGGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp GCTTCACTCTTATCTACCTCAGACATCACTGGACTGTaGGAAGCACTCTCTTCATTCCTATTGGCACCACAG +
Preference number: 3 (lower is better)
Translates to: ASLLSTSDITGL*EALSSFLLAPQ
Trigger: CTGTGGTGCCAATAGGAATGAAGAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTAGATAAGAGTGAAGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATCAGCCCACTGCTTCCTaGAGAAACTCTGAGGTCACA +
Preference number: 3 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDQPTAS*RNSEVT
Trigger: TGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCTG...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATTTCAGATACACAATGTaGGTGAAGGCCTCCCTCCTC +
Preference number: 3 (lower is better)
Translates to: SSCTKASAPYRSASVETNFRYTM*VKASLL
Trigger: GAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAA...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp CAGAAAAGCTTCACTCTTATCTACCTCAGACATCACTaGACTGTGGGAAGCACTCTCCTGAATCCCCATAAG +
Preference number: 3 (lower is better)
Translates to: QKSFTLIYLRHH*TVGSTLLNPHK
Trigger: CTTATGGGGATTCAGGAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTAGATAAGAGTGAAGCTTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR GCA 72 bp GTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTaGATCAGTAGAAACCAATTCCCTGATTCATGGTGT +
Preference number: 3 (lower is better)
Translates to: VFLYQSFCSLQI*ISRNQFPDSWC
Trigger: ACACCATGAATCAGGGAATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 72 bp CACACAGTGTTCACTAAGATGCAAGAGTTTGGGGAATaGCAAAGACTGGGAGGATCCAACTGTGTGATCATA +
Preference number: 3 (lower is better)
Translates to: HTVFTKMQEFGE*QRLGGSNCVII
Trigger: TATGATCACACAGTTGGATCCTCCCAGTCTTTGGCATTCCCCAAACTCTTGCATCTTAGTGAACACTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR CCA 72 bp GTGAAAGCCACTCAAGTAAAACCATTCTTAGCACCTTaGGCTCAAACAGAACCAGAGGGTCCAATAACTTGG +
Preference number: 3 (lower is better)
Translates to: VKATQVKPFLAP*AQTEPEGPITW
Trigger: CCAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGTGCTAAGAATGGTTTTACTTGAGTGGCTTTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp CACCCAAGTTTGATTTCACGGTTGGACTGCTGGTATTaGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTT +
Preference number: 3 (lower is better)
Translates to: HPSLISRLDCWY*KCRGSLSWQMF
Trigger: AAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGAAATCAAACTTGGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp TCATCATCCACTGTACTTGTGCTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGCCATTCAAGTCTTAAA +
Preference number: 3 (lower is better)
Translates to: SSSTVLVLGGAS*DTAKSSHSSLK
Trigger: TTTAAGACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TATTGGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCTGGCCTTGTGCTCTaGGTCTGTAGTAGATGTAGG +
Preference number: 3 (lower is better)
Translates to: YWKCRGSLSWQMFSLTVKAGLVL*VCSRCR
Trigger: CCTACATCTACTACAGACCAAGAGCACAAGGCCAGC...TTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CCA 72 bp GACTGCTGGTATTGGAAATGCCGGGGAAGTCTTTCATaGCAAATGTTTTCTCTAACTGTGAAAGCCACTCAA +
Preference number: 3 (lower is better)
Translates to: DCWYWKCRGSLS*QMFSLTVKATQ
Trigger: TTGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR GCA 72 bp AGTTTGATTTCACGGTTGGACTGCTGGTATTGGAAATaGCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTA +
Preference number: 3 (lower is better)
Translates to: SLISRLDCWYWK*RGSLSWQMFSL
Trigger: TAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGAAATCAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp GGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCCACTCAAGTAAAACCAATAACTTGGTCATaGCTTCTGCTGTCGCTGCTG +
Preference number: 3 (lower is better)
Translates to: GSLSWQMFSLTVKATQVKPITWS*LLLSLL
Trigger: CAGCAGCGACAGCAGAAGCAATGACCAAGTTATTGG...TTTTACTTGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp CCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCCACTCAAGTATACTGGAAAAATACTaGAAACTGAGCTCAACTCAG +
Preference number: 3 (lower is better)
Translates to: PGKSFMANVFSNCESHSSILEKY*KLSSTQ
Trigger: CTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTAT...ACTTGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp CTCCAACTTATCTGCAGTCAATGTTTTTCTTGCTCTGCTGGTAATAATAGAATTCCAATAACTTGGTCATaGCTTCTGCTGTCGCTGCTG +
Preference number: 3 (lower is better)
Translates to: LQLICSQCFSCSAGNNRIPITWS*LLLSLL
Trigger: CAGCAGCGACAGCAGAAGCAATGACCAAGTTATTGG...AATTCTATTATTACCAGCAGAGCAAGAAAAACATTGACTGCAGATAAGTTGGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
3UTR GCA 72 bp TACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTaGTCCCTACAGATCTGCATCAGTAGAAACCAATTC +
Preference number: 3 (lower is better)
Translates to: YNISYVFLYQSF*SLQICISRNQF
Trigger: GAATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR-3UTR CAA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTAGTCTTCTTTAGGAGGTaGATGAATTTCTTTCTCCTC +
Preference number: 3 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLVFFRR*MNFFLL
Trigger: GAGGAGAAAGAAATTCATCAACCTCCTAAAGAAGAC...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp CCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTAGCTAACCAGCCCTGCTCTGGCTaGTCCTCTTCCTGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: PHSCSSDQARSGPMALANQPCSG*SSSWCE
Trigger: CTCACACCAGGAAGAGGAGCAGCCAGAGCAGGGCTG...GTTAGCTAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp ACAACTCAAGAGCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCAAGAAAGCAAGTGTaGATGGGGCCTGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: TTQEPDHTPVAVTRPDLGPRKQV*MGPGVP
Trigger: GGGCACCCCAGGCCCCATTCACACTTGCTTTCTTGG...GCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGCTCTTGAGTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211571.2
CDS-3UTR GCA 90 bp GCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTGTGGAATGGGGCCTGGGGTaGCCTTCATCATCCACTGTA +
Preference number: 4 (lower is better)
Translates to: AGPSLRLPFSDSWGAGLVEWGLG*PSSSTV
Trigger: TACAGTGGATGATGAAGGGCACCCCAGGCCCCATTC...CACAAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp GGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTGAGACACAGCTATGCTaGTACACCTCAGACGACTGG +
Preference number: 4 (lower is better)
Translates to: GAGPSLRLPFSDSWGAGLETQLC*YTSDDW
Trigger: CCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTC...AAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCCACATCCGGGAGCCTaGGCGGGCGCAGTAGATCAC +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFPHPGA*AGAVDH
Trigger: GTGATCTACTGCGCCCGCCCAGGCTCCCGGATGTGG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCATTGGCACCACAGCCCTaGTCTGGCTGCTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPLAPQP*SGCSSS
Trigger: GGAAGAGGAGCAGCCAGAGCAGGGCTGTGGTGCCAA...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp ATAGGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: IGAGPSLRLPFSDSWGAGLGGAS*DTAKSS
Trigger: GCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAG...GCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR TCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCACCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACT +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPPASGL*VTDPRT
Trigger: AGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGG...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp GGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTTCGGCCTTTGTGTTCTaGGGACACATGAATTCGTTC +
Preference number: 4 (lower is better)
Translates to: GAGPSLRLPFSDSWGAGLSAFVF*GHMNSF
Trigger: GAACGAATTCATGTGTCCTCAGAACACAAAGGCCGA...AAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCCAAGAAAGCAAGTGTaGATGGGGCCTGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFPRKQV*MGPGVP
Trigger: GGGCACCCCAGGCCCCATTCACACTTGCTTTCTTGG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp GGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTAGCATCATGGGACACTaGCAAAAGCAGCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: GAGPSLRLPFSDSWGAGLSIMGH*QKQPFK
Trigger: CTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCT...AAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp AGGAGGGCCACATTCTCCACATTGATAGGGGCTGGCCCATCACTGAGGCTCCCGACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTA +
Preference number: 4 (lower is better)
Translates to: RRATFSTLIGAGPSLRLPTGLPA*TSPDCL
Trigger: TAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGT...CGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGCCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp ATAGGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACAC +
Preference number: 4 (lower is better)
Translates to: IGAGPSLRLPFSDSWGAGHCTCA*WSIMGH
Trigger: GTGTCCCATGATGCTCCACCAAGCACAAGTACAGTG...GCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR TCA 90 bp GACCAGGCCCGATCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCTCGGCCTTTGTGTTCTaGGGACACATGAATTCGTTC +
Preference number: 4 (lower is better)
Translates to: DQARSGPMALANRRATFSSAFVF*GHMNSF
Trigger: GAACGAATTCATGTGTCCTCAGAACACAAAGGCCGA...GGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGATCGGGCCTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TCCACATTGATAGGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGAGGGAGGGGTGGCATTaGCAGGAGCTTCTTGAACTG +
Preference number: 4 (lower is better)
Translates to: STLIGAGPSLRLPFSDSWREGWH*QELLEL
Trigger: CAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCT...CCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCCTCCAGAGGGCAGGTaGCTGCACTCACTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFPPEGR*LHSLPL
Trigger: AAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp GCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTACAAGGACTCAAACTCTaGAAGAACATGGCTGTAGGC +
Preference number: 4 (lower is better)
Translates to: ARPHSCSSDQARSGPMALQGLKL*KNMAVG
Trigger: GCCTACAGCCATGTTCTTGCAGAGTTTGAGTCCTTG...TAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCACATCCGGGAGCCTaGGCGGGCGCAGTAGATCAC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHPHPGA*AGAVDH
Trigger: GTGATCTACTGCGCCCGCCCAGGCTCCCGGATGTGG...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGAGAAAGCAAGTGTGAATaGGGCCTGGGGTGCCCTTCA +
Preference number: 4 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRESKCE*GLGCPS
Trigger: TGAAGGGCACCCCAGGCCCCATTCACACTTGCTTTC...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
3UTR CAA 72 bp GCCTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACACTGCCAAAAGCAGCC +
Preference number: 4 (lower is better)
Translates to: AWGALHHPLYLC*VEHHGTLPKAA
Trigger: GGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp ATAGGGGCTGGCCCATCACTGAGGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCTTCCAGCCATCTTTCTaGATGAGATTGAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: IGAGPSLRLPFSDSWGAGFQPSF*MRLSPP
Trigger: AGGAGGACTCAATCTCATTCAGAAAGATGGCTGGAA...GCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp GCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTAACAACTACAAGACCTTaGCTGGTAGCTACAGCAACA +
Preference number: 4 (lower is better)
Translates to: ARPHSCSSDQARSGPMALTTTRP*LVATAT
Trigger: TGTTGCTGTAGCTACCAGTCAAGGTCTTGTAGTTGT...TAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACTGGAGAGAGCTGCTGTaGAGCCCGGTCCACATGCCC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHWRELL*SPVHMP
Trigger: GGGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCA...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp GAGGGCCACATTCTCCACATTGATAGGGGCTGGCCCATCACTGAGGCTCCCGTTCAAGAGTTTGGGGAATaGCAAAGACTGGGAGGATCC +
Preference number: 4 (lower is better)
Translates to: EGHILHIDRGWPITEAPVQEFGE*QRLGGS
Trigger: GGATCCTCCCAGTCTTTGGCATTCCCCAAACTCTTG...AACGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCCAGCCCTGCTCTGGCTaGTCCTCTTCCTGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSQPCSG*SSSWCE
Trigger: CTCACACCAGGAAGAGGAGCAGCCAGAGCAGGGCTG...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGACAGAGGGCAGGTGACTaGACTCACTTCCTCTTCATG +
Preference number: 4 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRQRAGD*THFLFM
Trigger: CATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTG...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAATTTCTGGAGAGAGCTaGTGTGAAGCCCGGTCCACA +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPISGES*CEARST
Trigger: TGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAAT...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCGAATGGGGCCTGGGGTaGCCTTCATCATCCACTGTA +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFEWGLG*PSSSTV
Trigger: TACAGTGGATGATGAAGGGCACCCCAGGCCCCATTC...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAGTAACTGTAACCCCGTaGGCAGGTCTCCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPVTVTP*AGLLLP
Trigger: TGGAAGAAGGAGACCTGCCCACGGGGTTACAGTTAC...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCACATTGATAGGGGAAAGCAAGTGTGAATaGGGCCTGGGGTGCCCTTCA +
Preference number: 4 (lower is better)
Translates to: SGPMALANRRATFSTLIGESKCE*GLGCPS
Trigger: TGAAGGGCACCCCAGGCCCCATTCACACTTGCTTTC...CCCTATCAATGTGGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211571.2
3UTR CAA 72 bp ATGGCCTTAGCTAACAGGAGGGCCACATTCTCCACATaGATAGGGGCTGGCCCATCACTGAGGCTCCCGTTT +
Preference number: 4 (lower is better)
Translates to: MALANRRATFST*IGAGPSLRLPF
Trigger: AAACGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGCCCTCCTGTTAGCTAAGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000138480.2
ENSMUST00000142663.8
ENSMUST00000211347.2
ENSMUST00000211571.2
CDS-3UTR TCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCGCTCTGATCTTGCAGTaGTCACAGGGAGGGGTGGCA +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSALILQ*SQGGVA
Trigger: TGCCACCCCTCCCTGTGATCACTGCAAGATCAGAGC...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCCTCCAGAGGGCAGGTaGCTGCACTCACTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTPPEGR*LHSLPL
Trigger: AAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCGTCCTCCTCCTGTGCTaGCTAACGCCAACCATTTCC +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGVLLLC*LTPTIS
Trigger: GGAAATGGTTGGCGTTAGGCAGCACAGGAGGAGGAC...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGACAAGAGTTTGGGGAATaGCAAAGACTGGGAGGATCC +
Preference number: 4 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRQEFGE*QRLGGS
Trigger: GGATCCTCCCAGTCTTTGGCATTCCCCAAACTCTTG...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACTTGGCACCACAGCCCTaGTCTGGCTGCTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHLAPQP*SGCSSS
Trigger: GGAAGAGGAGCAGCCAGAGCAGGGCTGTGGTGCCAA...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCATTTCTGGAGAGAGCTaGTGTGAAGCCCGGTCCACA +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFISGES*CEARST
Trigger: TGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAAT...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCGAGACACAGCTATGCTaGTACACCTCAGACGACTGG +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFETQLC*YTSDDW
Trigger: CCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTC...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCTCACGGTTGGACTGCTaGTATTGGAAATGCCGGGGA +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFSRLDC*YWKCRG
Trigger: TCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGA...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAGCTTCCCTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: PGELALCSWSVVDVGEASLGGAS*DTAKSS
Trigger: GCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAG...GGAAGCTTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp GGCTCCCGTTTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTATGTACTTGTGCTTGGTaGAGCATCATGGGACACTGC +
Preference number: 4 (lower is better)
Translates to: GSRLVTPGELALCSWSVVCTCAW*SIMGHC
Trigger: GCAGTGTCCCATGATGCTCCACCAAGCACAAGTACA...TACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp TTAGCTAACAGGAGGGCCACATTCTCCACATTGATAGGGGCTGGCCCATCACTGAGTGTGAATGGGGCCTaGGGTGCCCTTCATCATCCA +
Preference number: 4 (lower is better)
Translates to: LANRRATFSTLIGAGPSLSVNGA*GALHHP
Trigger: TGGATGATGAAGGGCACCCCAGGCCCCATTCACACT...CAGTGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGCCCTCCTGTTAGCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCGAAAGCAAGTGTGAATaGGGCCTGGGGTGCCCTTCA +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGESKCE*GLGCPS
Trigger: TGAAGGGCACCCCAGGCCCCATTCACACTTGCTTTC...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
3UTR CAA 72 bp CAGGCTGCTTCCAGTGAAGGTCAGCCCACTGCTTCCTaGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCA +
Preference number: 4 (lower is better)
Translates to: QAASSEGQPTAS*RNSEVTEPQKP
Trigger: TGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGTGGGCTGACCTTCACTGGAAGCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 72 bp GTGATCACAGGGAGGGGTGGCATTGACAGGAGCTTCTaGAACTGGTGTGTACTGAGCACTTCCCCGTCAAAG +
Preference number: 4 (lower is better)
Translates to: VITGRGGIDRSF*NWCVLSTSPSK
Trigger: CTTTGACGGGGAAGTGCTCAGTACACACCAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCTGTGATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACT +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHPASGL*VTDPRT
Trigger: AGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGG...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGAAAGCCTTTCATCTTCTaGGAAGGTCTGGCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRKPFIF*EGLAVK
Trigger: CTTCACAGCCAGACCTTCTCAGAAGATGAAAGGCTT...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGACTCCAGCTTCTTCAGTaGCTAAAGAGACCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRLQLLQ*LKRPFF
Trigger: GAAGAAGGGTCTCTTTAGTCACTGAAGAAGCTGGAG...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCCAAGAAAGCAAGTGTaGATGGGGCCTGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREPRKQV*MGPGVP
Trigger: GGGCACCCCAGGCCCCATTCACACTTGCTTTCTTGG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACGGAAGAGACAGCATGTaGGAGCAGCCAGGTCCCACA +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHGRDSM*EQPGPT
Trigger: TGTGGGACCTGGCTGCTCGCACATGCTGTCTCTTCC...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCAGATGGAGCTTCTTCTaGTGCTGCACGCCGACTCCA +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTRWSFF*CCTPTP
Trigger: TGGAGTCGGCGTGCAGCAGCAGAAGAAGCTCCATCT...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGTTGGCACCACAGCCCTaGTCTGGCTGCTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRELAPQP*SGCSSS
Trigger: GGAAGAGGAGCAGCCAGAGCAGGGCTGTGGTGCCAA...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCGAATGGGGCCTGGGGTaGCCTTCATCATCCACTGTA +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSEWGLG*PSSSTV
Trigger: TACAGTGGATGATGAAGGGCACCCCAGGCCCCATTC...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCACATGAATTCGTTCTaGCTTCCCACGACGCTCTTG +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFHMNSF*LPTTLL
Trigger: CAAGAGCGTCGTGGGAAGCCAGAACGAATTCATGTG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp CCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAGCCACTCAAGTCCACATCCGGGAGCCTaGGCGGGCGCAGTAGATCAC +
Preference number: 4 (lower is better)
Translates to: PGKSFMANVFSNCESHSSPHPGA*AGAVDH
Trigger: GTGATCTACTGCGCCCGCCCAGGCTCCCGGATGTGG...ACTTGAGTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGAGGCTGCTCCTCTTCCTaGTGTGAGGCAAATTCTTTA +
Preference number: 4 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRGCSSS*CEANSL
Trigger: TAAAGAATTTGCCTCACACCAGGAAGAGGAGCAGCC...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCTACCTCAGACATCACTaGACTGTGGGAAGCACTCTC +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFYLRHH*TVGSTL
Trigger: GAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTA...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAAGATGGAGAACGAAATaGCAGTGCAATGCTGAAGGG +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPRWRTK*QCNAEG
Trigger: CCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCT...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCTCACGGTTGGACTGCTaGTATTGGAAATGCCGGGGA +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGSRLDC*YWKCRG
Trigger: TCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGA...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTA +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGTGLPA*TSPDCL
Trigger: TAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGT...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TTTTCTGACAACTCAAGAGCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGAACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTA +
Preference number: 4 (lower is better)
Translates to: FSDNSRARPHSCSSDQARTGLPA*TSPDCL
Trigger: TAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGT...TCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
3UTR CAA 72 bp GTGAAGCCCGGTCCACATGCCCACCTACGCTTTCCATaGCTGAAGTCAACACATTCAGTTCCAAGCACAACG +
Preference number: 4 (lower is better)
Translates to: VKPGPHAHLRFP*LKSTHSVPSTT
Trigger: CGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAATGGAAAGCGTAGGTGGGCATGTGGACCGGGCTTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCTCGGCCTTTGTGTTCTaGGGACACATGAATTCGTTC +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFSAFVF*GHMNSF
Trigger: GAACGAATTCATGTGTCCTCAGAACACAAAGGCCGA...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGGCTCTGATCTTGCAGTaGTCACAGGGAGGGGTGGCA +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREALILQ*SQGGVA
Trigger: TGCCACCCCTCCCTGTGATCACTGCAAGATCAGAGC...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCCTCCAGAGGGCAGGTaGCTGCACTCACTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREPPEGR*LHSLPL
Trigger: AAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACGTCCTCCTCCTGTGCTaGCTAACGCCAACCATTTCC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHVLLLC*LTPTIS
Trigger: GGAAATGGTTGGCGTTAGGCAGCACAGGAGGAGGAC...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAGGCAGCAGCTGCTTTTaGTTGTTTCAAAGTGTTGAG +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPGSSCF*LFQSVE
Trigger: CTCAACACTTTGAAACAAGCAAAAGCAGCTGCTGCC...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp GGATTTCTGGAGAGAGCTGCTGTGAAGCCCGGTCCACATGCCCACCTACGCTTTGGCAGCAGCTGCTTTTaGTTGTTTCAAAGTGTTGAG +
Preference number: 4 (lower is better)
Translates to: GFLERAAVKPGPHAHLRFGSSCF*LFQSVE
Trigger: CTCAACACTTTGAAACAAGCAAAAGCAGCTGCTGCC...AAAGCGTAGGTGGGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAAGAGTTTGGGGAATaGCAAAGACTGGGAGGATCC +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGQEFGE*QRLGGS
Trigger: GGATCCTCCCAGTCTTTGGCATTCCCCAAACTCTTG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp CAGACAGAGGGTAAGATATCCAGGCCAGAAACCGTAAGACCTACAGATGTCAGTGGAAGAGACAGCATGTaGGAGCAGCCAGGTCCCACA +
Preference number: 4 (lower is better)
Translates to: QTEGKISRPETVRPTDVSGRDSM*EQPGPT
Trigger: TGTGGGACCTGGCTGCTCGCACATGCTGTCTCTTCC...ACTGACATCTGTAGGTCTTACGGTTTCTGGCCTGGATATCTTACCCTCTGTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACAGATGGAGCTTCTTCTaGTGCTGCACGCCGACTCCA +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHRWSFF*CCTPTP
Trigger: TGGAGTCGGCGTGCAGCAGCAGAAGAAGCTCCATCT...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACGAAGCCCGGTCCACATaGCCACCTACGCTTTCCATT +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHEARST*PPTLSI
Trigger: AATGGAAAGCGTAGGTGGGCATGTGGACCGGGCTTC...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCATTTCTGGAGAGAGCTaGTGTGAAGCCCGGTCCACA +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSISGES*CEARST
Trigger: TGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAAT...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp GACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAGCAGCATCATGGGACACTaGCAAAAGCAGCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: DSWGAGLVLLVCSRCRRSSIMGH*QKQPFK
Trigger: CTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCT...GCTTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR GCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCATCCACTGTACTTGTaGTTGGTGGAGCATCATGGG +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGHPLYL*LVEHHG
Trigger: CCCATGATGCTCCACCAAGCACAAGTACAGTGGATG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp AGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGACATCCACTGTACTTGTaGTTGGTGGAGCATCATGGG +
Preference number: 4 (lower is better)
Translates to: SDSWGAGLVLLVCSRCRRHPLYL*LVEHHG
Trigger: CCCATGATGCTCCACCAAGCACAAGTACAGTGGATG...TCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGAATGGCTGTAGGCTTCTaGTATCACTGGCACAAAAGT +
Preference number: 4 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRMAVGF*YHWHKS
Trigger: ACTTTTGTGCCAGTGATACCAGAAGCCTACAGCCAT...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCACATGAATTCGTTCTaGCTTCCCACGACGCTCTTG +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGHMNSF*LPTTLL
Trigger: CAAGAGCGTCGTGGGAAGCCAGAACGAATTCATGTG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATCCACATCCGGGAGCCTaGGCGGGCGCAGTAGATCAC +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDPHPGA*AGAVDH
Trigger: GTGATCTACTGCGCCCGCCCAGGCTCCCGGATGTGG...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCCGTTTAGTGACTCCTaGGGAGCTGGCCTTGTGCTC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREPFSDS*GAGLVL
Trigger: GAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp GTAGAAGGAACTCAAGGAAGGATGGCCACTGGTCTTCCGGCCTGGACTTCACCATTCCAGCCATCTTTCTaGATGAGATTGAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: VEGTQGRMATGLPAWTSPFQPSF*MRLSPP
Trigger: AGGAGGACTCAATCTCATTCAGAAAGATGGCTGGAA...TGGTGAAGTCCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCTCGGCCTTTGTGTTCTaGGGACACATGAATTCGTTC +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGSAFVF*GHMNSF
Trigger: GAACGAATTCATGTGTCCTCAGAACACAAAGGCCGA...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGAGGGAGGGGTGGCATTaGCAGGAGCTTCTTGAACTG +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREREGWH*QELLEL
Trigger: CAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp ATATCACAGGTTCTGGTGAACTTTTCTGACAACTCAAGAGCCAGACCACACTCCGCTCTGATCTTGCAGTaGTCACAGGGAGGGGTGGCA +
Preference number: 4 (lower is better)
Translates to: ISQVLVNFSDNSRARPHSALILQ*SQGGVA
Trigger: TGCCACCCCTCCCTGTGATCACTGCAAGATCAGAGC...GGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCGAATCTTCGTCGGACTaGCTGCCTCTTCTACTACTG +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSESSSD*LPLLLL
Trigger: CAGTAGTAGAAGAGGCAGTCAGTCCGACGAAGATTC...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCTCCTCTTCCTGGTGTaGGGCAAATTCTTTAAGCCT +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGLLFLV*GKFFKP
Trigger: AGGCTTAAAGAATTTGCCTCACACCAGGAAGAGGAG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCCTGTCTTTAACAGCCTaGAGAGACACGAGGGGAGAT +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSLSLTA*RDTRGD
Trigger: ATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGACAG...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCTGTCTTTAACAGCCTaGAGAGACACGAGGGGAGAT +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTLSLTA*RDTRGD
Trigger: ATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGACAG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTTGGAGAGAGCTGCTGTaGAGCCCGGTCCACATGCCC +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIWRELL*SPVHMP
Trigger: GGGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCA...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGGGCTGGCCCATCACTaGGGCTCCCGTTTAGTGACT +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNGLAHH*GSRLVT
Trigger: AGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCATTAACAGGCGTTCCTTaGCTTCACTCCAAAGAAGAA +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPLTGVP*LHSKEE
Trigger: TTCTTCTTTGGAGTGAAGTCAAGGAACGCCTGTTAA...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107653.8
CDS-3UTR TCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCGGAATGCTGGAGCATTaGAAAGGGAAGGCAATGGCT +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTGMLEH*KGKAMA
Trigger: AGCCATTGCCTTCCCTTTTCAATGCTCCAGCATTCC...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp GTGCTTGGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATTCAAGTCTTAAAGTCCTCCTCCTGTGCTaGCTAACGCCAACCATTTCC +
Preference number: 4 (lower is better)
Translates to: VLGGASWDTAKSSHSSLKVLLLC*LTPTIS
Trigger: GGAAATGGTTGGCGTTAGGCAGCACAGGAGGAGGAC...TTTAAGACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp CAGACAGAGGGTAAGATATCCAGGCCAGAAACCGTAAGACCTACAGATGTCAGTGTCCTCCTCCTGTGCTaGCTAACGCCAACCATTTCC +
Preference number: 4 (lower is better)
Translates to: QTEGKISRPETVRPTDVSVLLLC*LTPTIS
Trigger: GGAAATGGTTGGCGTTAGGCAGCACAGGAGGAGGAC...ACTGACATCTGTAGGTCTTACGGTTTCTGGCCTGGATATCTTACCCTCTGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCCATCCACTGTACTTGTaGTTGGTGGAGCATCATGGG +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSHPLYL*LVEHHG
Trigger: CCCATGATGCTCCACCAAGCACAAGTACAGTGGATG...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp AAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCACACTTCTCATGGCTGTAGGCTTCTaGTATCACTGGCACAAAAGT +
Preference number: 4 (lower is better)
Translates to: KVDPQLGLLRPEEAVTLLMAVGF*YHWHKS
Trigger: ACTTTTGTGCCAGTGATACCAGAAGCCTACAGCCAT...GAGAAGTGTGACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACGAGACACAGCTATGCTaGTACACCTCAGACGACTGG +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHETQLC*YTSDDW
Trigger: CCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTC...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp GCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAGCTTCCATTCCTCCCACATGAATTCGTTCTaGCTTCCCACGACGCTCTTG +
Preference number: 4 (lower is better)
Translates to: AGLVLLVCSRCRRSFHSSHMNSF*LPTTLL
Trigger: CAAGAGCGTCGTGGGAAGCCAGAACGAATTCATGTG...GGAGGAATGGAAGCTTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp GTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAAGGAGCTTCTTGAACTaGTGTGTACTGAGCACTTCC +
Preference number: 4 (lower is better)
Translates to: VTPGELALCSWSVVDVGERSFLN*CVLSTS
Trigger: GGAAGTGCTCAGTACACACCAGTTCAAGAAGCTCCT...TTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCTTTCATGCGATGAGATaGAGCTTCTTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGFHAMR*SFFCCC
Trigger: GCAGCAGCAGAAGAAGCTCCATCTCATCGCATGAAA...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCTCTTCATTCCTATTaGCACCACAGCCCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTSLHSY*HHSPAL
Trigger: CAGAGCAGGGCTGTGGTGCCAATAGGAATGAAGAGA...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCAGATGGAGAACGAAATaGCAGTGCAATGCTGAAGGG +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGRWRTK*QCNAEG
Trigger: CCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCT...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACAGACACGAGGGGAGATaGAGAACGAAATGGCAGTGC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHRHEGR*RTKWQC
Trigger: GCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCT...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTGTACTTGTGCTTGGTaGAGCATCATGGGACACTGC +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTCTCAW*SIMGHC
Trigger: GCAGTGTCCCATGATGCTCCACCAAGCACAAGTACA...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CGTTTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTATGTACTTGTGCTTGGTaGAGCATCATGGGACACTGC +
Preference number: 4 (lower is better)
Translates to: RLVTPGELALCSWSVVDVCTCAW*SIMGHC
Trigger: GCAGTGTCCCATGATGCTCCACCAAGCACAAGTACA...TACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACAC +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTHCTCA*WSIMGH
Trigger: GTGTCCCATGATGCTCCACCAAGCACAAGTACAGTG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCCCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACT +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSPASGL*VTDPRT
Trigger: AGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGG...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCTCGGCCTTTGTGTTCTaGGGACACATGAATTCGTTC +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSSAFVF*GHMNSF
Trigger: GAACGAATTCATGTGTCCTCAGAACACAAAGGCCGA...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGCTCTGATCTTGCAGTaGTCACAGGGAGGGGTGGCA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNALILQ*SQGGVA
Trigger: TGCCACCCCTCCCTGTGATCACTGCAAGATCAGAGC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCTCCTCTTCCTGGTGTaGGGCAAATTCTTTAAGCCT +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTLLFLV*GKFFKP
Trigger: AGGCTTAAAGAATTTGCCTCACACCAGGAAGAGGAG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACATGGCAGTGCAATGCTaGAGGGCAGAAAAGCTTCAC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHMAVQC*RAEKLH
Trigger: GTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCAT...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCACAAAGGCAGCAGCTaGTTTTGCTTGTTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFHKGSS*FCLFQS
Trigger: ACTTTGAAACAAGCAAAAGCAGCTGCTGCCTTTGTG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp CTTGGTCAAAGTAGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCACACTGTTAGTACTGTCTaGACAGGAAACATCACAAAG +
Preference number: 4 (lower is better)
Translates to: LGQSRSPTRPAATRGSGHTVSTV*TGNITK
Trigger: CTTTGTGATGTTTCCTGTGCAGACAGTACTAACAGT...GTGACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCTACTTTGACCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGGAAGAGACAGCATGTaGGAGCAGCCAGGTCCCACA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNGRDSM*EQPGPT
Trigger: TGTGGGACCTGGCTGCTCGCACATGCTGTCTCTTCC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTCAGCCCTGCTCTGGCTaGTCCTCTTCCTGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIQPCSG*SSSWCE
Trigger: CTCACACCAGGAAGAGGAGCAGCCAGAGCAGGGCTG...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGCATCATGGGACACTaGCAAAAGCAGCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSSIMGH*QKQPFK
Trigger: CTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCT...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CATCAGGCTTATGTCATTCAGATACACAATGTTGGTGAAGGCCTCCCTCCTCCTGAGACACAGCTATGCTaGTACACCTCAGACGACTGG +
Preference number: 4 (lower is better)
Translates to: HQAYVIQIHNVGEGLPPPETQLC*YTSDDW
Trigger: CCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTC...AGGAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAATGACATAAGCCTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCACATGAATTCGTTCTaGCTTCCCACGACGCTCTTG +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHHMNSF*LPTTLL
Trigger: CAAGAGCGTCGTGGGAAGCCAGAACGAATTCATGTG...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGLGQHP*IQKALS
Trigger: TGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CAGGTTCTGGTGAACTTTTCTGACAACTCAAGAGCCAGACCACACTCCTGTAGCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACAC +
Preference number: 4 (lower is better)
Translates to: QVLVNFSDNSRARPHSCSHCTCA*WSIMGH
Trigger: GTGTCCCATGATGCTCCACCAAGCACAAGTACAGTG...GCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR TCA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTTCCAGCCATCTTTCTaGATGAGATTGAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTFQPSF*MRLSPP
Trigger: AGGAGGACTCAATCTCATTCAGAAAGATGGCTGGAA...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGGGGTGGCATTaGCAGGAGCTTCTTGAACTG +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSREGWH*QELLEL
Trigger: CAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCT...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp CATCAGGCTTATGTCATTCAGATACACAATGTTGGTGAAGGCCTCCCTCCTCCTGCTGTAAGGTCCAGCTaGGACTTCAAATGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: HQAYVIQIHNVGEGLPPPAVRSS*DFKCSN
Trigger: GTTGGAGCATTTGAAGTCTCAGCTGGACCTTACAGC...AGGAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAATGACATAAGCCTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGGAATCTTCGTCGGACTaGCTGCCTCTTCTACTACTG +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREESSSD*LPLLLL
Trigger: CAGTAGTAGAAGAGGCAGTCAGTCCGACGAAGATTC...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGATGGCAGTGCAATGCTaGAGGGCAGAAAAGCTTCAC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREMAVQC*RAEKLH
Trigger: GTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCAT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGCTTCTTCAGTaGCTAAAGAGACCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHLQLLQ*LKRPFF
Trigger: GAAGAAGGGTCTCTTTAGTCACTGAAGAAGCTGGAG...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCAAGGACTCAAACTCTaGAAGAACATGGCTGTAGGC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHQGLKL*KNMAVG
Trigger: GCCTACAGCCATGTTCTTGCAGAGTTTGAGTCCTTG...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp GCTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGGTCCCAAGGACTCAAACTCTaGAAGAACATGGCTGTAGGC +
Preference number: 4 (lower is better)
Translates to: AEVNTFSSKHNVVNSARSQGLKL*KNMAVG
Trigger: GCCTACAGCCATGTTCTTGCAGAGTTTGAGTCCTTG...GGACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCGTCCTCCTCCTGTGCTaGCTAACGCCAACCATTTCC +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSVLLLC*LTPTIS
Trigger: GGAAATGGTTGGCGTTAGGCAGCACAGGAGGAGGAC...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGATGGAGCTTCTTCTaGTGCTGCACGCCGACTCCA +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSRWSFF*CCTPTP
Trigger: TGGAGTCGGCGTGCAGCAGCAGAAGAAGCTCCATCT...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAATGCTAAAACTTTCATaGGATGAGATGGAGCTTCTT +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPMLKLS*DEMELL
Trigger: AAGAAGCTCCATCTCATCGCATGAAAGTTTTAGCAT...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCTTGATACTCTCCTTTaGTCTTTTCAAGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFLDTLL*SFQVQK
Trigger: CTTCTGGACTTGAAAAGAGCAAAGGAGAGTATCAAG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGAATGGGGCCTGGGGTaGCCTTCATCATCCACTGTA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNEWGLG*PSSSTV
Trigger: TACAGTGGATGATGAAGGGCACCCCAGGCCCCATTC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACAGGAGCTTCTTGAACTaGTGTGTACTGAGCACTTCC +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHRSFLN*CVLSTS
Trigger: GGAAGTGCTCAGTACACACCAGTTCAAGAAGCTCCT...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp CTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGGTCCCTTTCATGCGATGAGATaGAGCTTCTTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LKSTHSVPSTTLSIPPGPFHAMR*SFFCCC
Trigger: GCAGCAGCAGAAGAAGCTCCATCTCATCGCATGAAA...GGGACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp GCTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGGTCCGGCTGCTCCTCTTCCTaGTGTGAGGCAAATTCTTTA +
Preference number: 4 (lower is better)
Translates to: AEVNTFSSKHNVVNSARSGCSSS*CEANSL
Trigger: TAAAGAATTTGCCTCACACCAGGAAGAGGAGCAGCC...GGACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACAGATGGAGAACGAAATaGCAGTGCAATGCTGAAGGG +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHRWRTK*QCNAEG
Trigger: CCCTTCAGCATTGCACTGCCATTTCGTTCTCCATCT...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCCTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSLGQHP*IQKALS
Trigger: TGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAG...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TTAGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGATTTGGTTGTAAAGTCTaGGGTGCCCTTCATCATCCA +
Preference number: 4 (lower is better)
Translates to: LVTPGELALCSWSVVDVGFGCKV*GALHHP
Trigger: TGGATGATGAAGGGCACCCCAGACTTTACAACCAAA...TCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS-3UTR CCA 90 bp TGGTCTGTAGTAGATGTAGGAGAAGCTTCCATTCCTCCAAGGTCTCAGGGATCCCAGTCACAGGAATGCTaGAGCATTGAAAAGGGAAGG +
Preference number: 4 (lower is better)
Translates to: WSVVDVGEASIPPRSQGSQSQEC*SIEKGR
Trigger: CCTTCCCTTTTCAATGCTCCAGCATTCCTGTGACTG...GGATCCCTGAGACCTTGGAGGAATGGAAGCTTCTCCTACATCTACTACAGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR CAA 72 bp TTGCTGAAGTCAACACATTCAGTTCCAAGCACAACGTaGTCAATTCCGCCAGGTCCCTCTGAAGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: LLKSTHSVPSTT*SIPPGPSEGCL
Trigger: CAAACAGCCTTCAGAGGGACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCTTCCCACGACGCTCTTaGTTTAATTCCCAAACAACT +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSFPRRS*FNSQTT
Trigger: AGTTGTTTGGGAATTAAATCAAGAGCGTCGTGGGAA...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TTTTCTGACAACTCAAGAGCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGACATCCTGAATATCCTTaGCTTCACTCCAAAGAAGAA +
Preference number: 4 (lower is better)
Translates to: FSDNSRARPHSCSSDQARHPEYP*LHSKEE
Trigger: TTCTTCTTTGGAGTGAAGTCAAGGATATTCAGGATG...TCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTCAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAACAGGGAAAGATGTaGGATTTTTCCATTAAAGTG +
Preference number: 4 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFQQGKM*DFSIKV
Trigger: CACTTTAATGGAAAAATCTCACATCTTTCCCTGTTG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGAAGCCTTTCATCTTCTaGGAAGGTCTGGCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREKPFIF*EGLAVK
Trigger: CTTCACAGCCAGACCTTCTCAGAAGATGAAAGGCTT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCTCCTCTTCCTGGTGTaGGGCAAATTCTTTAAGCCT +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRELLFLV*GKFFKP
Trigger: AGGCTTAAAGAATTTGCCTCACACCAGGAAGAGGAG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGGCTGCTGTGAGTTCTTaGAGCCTGTCTTCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREAAVSS*SLSSLG
Trigger: TCCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGC...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCTCCAGCTTCTTCAGTaGCTAAAGAGACCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRELQLLQ*LKRPFF
Trigger: GAAGAAGGGTCTCTTTAGTCACTGAAGAAGCTGGAG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCTACGCTTTCCATTGCTaGAGTCAACACATTCAGTTC +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSYAFHC*SQHIQF
Trigger: GAACTGAATGTGTTGACTTCAGCAATGGAAAGCGTA...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTATGGAGAGAGCTGCTGTaGAGCCCGGTCCACATGCCC +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLWRELL*SPVHMP
Trigger: GGGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCA...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGACCAAGAAAGCAAGTGTaGATGGGGCCTGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRPRKQV*MGPGVP
Trigger: GGGCACCCCAGGCCCCATTCACACTTGCTTTCTTGG...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGATACACAATGTTGGTaGAGGCCTCCCTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNDTQCW*RPPSSS
Trigger: AGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATTGGCACCACAGCCCTaGTCTGGCTGCTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRLAPQP*SGCSSS
Trigger: GGAAGAGGAGCAGCCAGAGCAGGGCTGTGGTGCCAA...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATGAAGCCCGGTCCACATaGCCACCTACGCTTTCCATT +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDEARST*PPTLSI
Trigger: AATGGAAAGCGTAGGTGGGCATGTGGACCGGGCTTC...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGAGACACAGCTATGCTaGTACACCTCAGACGACTGG +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNETQLC*YTSDDW
Trigger: CCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGAGGAGCTTCTTGAACTaGTGTGTACTGAGCACTTCC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRERSFLN*CVLSTS
Trigger: GGAAGTGCTCAGTACACACCAGTTCAAGAAGCTCCT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAGTAATAATAGAATTTTaGAAGAGACAGCATGTGCGA +
Preference number: 4 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPVIIEF*KRQHVR
Trigger: TCGCACATGCTGTCTCTTCCAAAATTCTATTATTAC...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGGACATCACTGGACTGTaGGAAGCACTCTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREDITGL*EALSSF
Trigger: GAATGAAGAGAGTGCTTCCCACAGTCCAGTGATGTC...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGTAACTGTAACCCCGTaGGCAGGTCTCCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNVTVTP*AGLLLP
Trigger: TGGAAGAAGGAGACCTGCCCACGGGGTTACAGTTAC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATAGTGTGAATGGGGCCTaGGGTGCCCTTCATCATCCA +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDSVNGA*GALHHP
Trigger: TGGATGATGAAGGGCACCCCAGGCCCCATTCACACT...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTGAAAGCAAGTGTGAATaGGGCCTGGGGTGCCCTTCA +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIESKCE*GLGCPS
Trigger: TGAAGGGCACCCCAGGCCCCATTCACACTTGCTTTC...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACCCGTTTAGTGACTCCTaGGGAGCTGGCCTTGTGCTC +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYPFSDS*GAGLVL
Trigger: GAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGG...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp GCTTATGTCATTCAGATACACAATGTTGGTGAAGGCCTCCCTCCTCCTCTCCAGAATGGCTCCCAAACCTaGAGCCATCTTTCATTCCTT +
Preference number: 4 (lower is better)
Translates to: AYVIQIHNVGEGLPPPLQNGSQT*SHLSFL
Trigger: AAGGAATGAAAGATGGCTCCAGGTTTGGGAGCCATT...CTGGAGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAATGACATAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TATTGGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAACCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACT +
Preference number: 4 (lower is better)
Translates to: YWKCRGSLSWQMFSLTVKPASGL*VTDPRT
Trigger: AGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGG...TTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGACAACTACAAGACCTTaGCTGGTAGCTACAGCAACA +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRETTTRP*LVATAT
Trigger: TGTTGCTGTAGCTACCAGTCAAGGTCTTGTAGTTGT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAACAGGGAAAGATGTaGGATTTTTCCATTAAAGTG +
Preference number: 4 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGQQGKM*DFSIKV
Trigger: CACTTTAATGGAAAAATCTCACATCTTTCCCTGTTG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp CGATCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCACATTGATACAACAGGGAAAGATGTaGGATTTTTCCATTAAAGTG +
Preference number: 4 (lower is better)
Translates to: RSGPMALANRRATFSTLIQQGKM*DFSIKV
Trigger: CACTTTAATGGAAAAATCTCACATCTTTCCCTGTTG...TATCAATGTGGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGATCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCGAATCTTCGTCGGACTaGCTGCCTCTTCTACTACTG +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSESSSD*LPLLLL
Trigger: CAGTAGTAGAAGAGGCAGTCAGTCCGACGAAGATTC...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATGATACACAATGTTGGTaGAGGCCTCCCTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDDTQCW*RPPSSS
Trigger: AGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATC...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTAGGGCTGGCCCATCACTaGGGCTCCCGTTTAGTGACT +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLGLAHH*GSRLVT
Trigger: AGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCC...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGGGCAGCAGCTGCTTTTaGTTGTTTCAAAGTGTTGAG +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREGSSCF*LFQSVE
Trigger: CTCAACACTTTGAAACAAGCAAAAGCAGCTGCTGCC...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCACTGTTAGTACTGTCTaGACAGGAAACATCACAAAG +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSTVSTV*TGNITK
Trigger: CTTTGTGATGTTTCCTGTGCAGACAGTACTAACAGT...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATCAAGAGTTTGGGGAATaGCAAAGACTGGGAGGATCC +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNQEFGE*QRLGGS
Trigger: GGATCCTCCCAGTCTTTGGCATTCCCCAAACTCTTG...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAGGAAGAGACAGCATGTaGGAGCAGCCAGGTCCCACA +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRGRDSM*EQPGPT
Trigger: TGTGGGACCTGGCTGCTCGCACATGCTGTCTCTTCC...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp CGATCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCACATTGATAATGCTAAAACTTTCATaGGATGAGATGGAGCTTCTT +
Preference number: 4 (lower is better)
Translates to: RSGPMALANRRATFSTLIMLKLS*DEMELL
Trigger: AAGAAGCTCCATCTCATCGCATGAAAGTTTTAGCAT...TATCAATGTGGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGATCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATCAGAGGGCAGGTGACTaGACTCACTTCCTCTTCATG +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDQRAGD*THFLFM
Trigger: CATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTG...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTCAGAGGGCAGGTGACTaGACTCACTTCCTCTTCATG +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIQRAGD*THFLFM
Trigger: CATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTG...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACGAAGCCCGGTCCACATaGCCACCTACGCTTTCCATT +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYEARST*PPTLSI
Trigger: AATGGAAAGCGTAGGTGGGCATGTGGACCGGGCTTC...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCCATCCACTGTACTTGTaGTTGGTGGAGCATCATGGG +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSHPLYL*LVEHHG
Trigger: CCCATGATGCTCCACCAAGCACAAGTACAGTGGATG...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCTCTCTTCATTCCTATTaGCACCACAGCCCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSSLHSY*HHSPAL
Trigger: CAGAGCAGGGCTGTGGTGCCAATAGGAATGAAGAGA...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATTACCTCAGACATCACTaGACTGTGGGAAGCACTCTC +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNYLRHH*TVGSTL
Trigger: GAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTA...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATGTAACTGTAACCCCGTaGGCAGGTCTCCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDVTVTP*AGLLLP
Trigger: TGGAAGAAGGAGACCTGCCCACGGGGTTACAGTTAC...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTA +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDITGLPA*TSPDCL
Trigger: TAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGT...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATCTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDLGGAS*DTAKSS
Trigger: GCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAG...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTCTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDILGGAS*DTAKSS
Trigger: GCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAG...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGTGTGAATGGGGCCTaGGGTGCCCTTCATCATCCA +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYSVNGA*GALHHP
Trigger: TGGATGATGAAGGGCACCCCAGGCCCCATTCACACT...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGACCGTTTAGTGACTCCTaGGGAGCTGGCCTTGTGCTC +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRPFSDS*GAGLVL
Trigger: GAGCACAAGGCCAGCTCCCCAGGAGTCACTAAACGG...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTCCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACT +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSPASGL*VTDPRT
Trigger: AGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGG...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATGCTGTAAGGTCCAGCTaGGACTTCAAATGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDAVRSS*DFKCSN
Trigger: GTTGGAGCATTTGAAGTCTCAGCTGGACCTTACAGC...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCCTCCTCTTCCTGGTGTaGGGCAAATTCTTTAAGCCT +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSLLFLV*GKFFKP
Trigger: AGGCTTAAAGAATTTGCCTCACACCAGGAAGAGGAG...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTATGGCAGTGCAATGCTaGAGGGCAGAAAAGCTTCAC +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIMAVQC*RAEKLH
Trigger: GTGAAGCTTTTCTGCCCTTCAGCATTGCACTGCCAT...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGTACGCTTTCCATTGCTaGAGTCAACACATTCAGTTC +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREYAFHC*SQHIQF
Trigger: GAACTGAATGTGTTGACTTCAGCAATGGAAAGCGTA...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCCAAGGACTCAAACTCTaGAAGAACATGGCTGTAGGC +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSQGLKL*KNMAVG
Trigger: GCCTACAGCCATGTTCTTGCAGAGTTTGAGTCCTTG...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp CTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAGCTTCCATTCCTCCAAGGTCCACAAAGGCAGCAGCTaGTTTTGCTTGTTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: LVLLVCSRCRRSFHSSKVHKGSS*FCLFQS
Trigger: ACTTTGAAACAAGCAAAAGCAGCTGCTGCCTTTGTG...GACCTTGGAGGAATGGAAGCTTCTCCTACATCTACTACAGACCAAGAGCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCATGCTCCAACTTATCTaGAGTCAATGTTTTTCTTGC +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSMLQLI*SQCFSC
Trigger: GCAAGAAAAACATTGACTGCAGATAAGTTGGAGCAT...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCATGCTAAAACTTTCATaGGATGAGATGGAGCTTCTT +
Preference number: 4 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSMLKLS*DEMELL
Trigger: AAGAAGCTCCATCTCATCGCATGAAAGTTTTAGCAT...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTTGATACTCTCCTTTaGTCTTTTCAAGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHLDTLL*SFQVQK
Trigger: CTTCTGGACTTGAAAAGAGCAAAGGAGAGTATCAAG...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATAGCATCATGGGACACTaGCAAAAGCAGCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNSIMGH*QKQPFK
Trigger: CTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCT...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TCAGCAATCCTCAGGATATCACAGGTTCTGGTGAACTTTTCTGACAACTCAAGACATCCACTGTACTTGTaGTTGGTGGAGCATCATGGG +
Preference number: 4 (lower is better)
Translates to: SAILRISQVLVNFSDNSRHPLYL*LVEHHG
Trigger: CCCATGATGCTCCACCAAGCACAAGTACAGTGGATG...TCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATATCCTGAGGATTGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CCA 90 bp TCCATTGCTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCATGGCTGTAGGCTTCTaGTATCACTGGCACAAAAGT +
Preference number: 4 (lower is better)
Translates to: SIAEVNTFSSKHNVVNSAMAVGF*YHWHKS
Trigger: ACTTTTGTGCCAGTGATACCAGAAGCCTACAGCCAT...GGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp AGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAGTAATAATAGAATTTTaGAAGAGACAGCATGTGCGA +
Preference number: 4 (lower is better)
Translates to: SDSWGAGLVLLVCSRCRRVIIEF*KRQHVR
Trigger: TCGCACATGCTGTCTCTTCCAAAATTCTATTATTAC...TCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGGCTGCTCCTCTTCCTaGTGTGAGGCAAATTCTTTA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNGCSSS*CEANSL
Trigger: TAAAGAATTTGCCTCACACCAGGAAGAGGAGCAGCC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATTCTCTTCATTCCTATTaGCACCACAGCCCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDSLHSY*HHSPAL
Trigger: CAGAGCAGGGCTGTGGTGCCAATAGGAATGAAGAGA...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTTACCTCAGACATCACTaGACTGTGGGAAGCACTCTC +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIYLRHH*TVGSTL
Trigger: GAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTA...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGACACGAGGGGAGATaGAGAACGAAATGGCAGTGC +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYRHEGR*RTKWQC
Trigger: GCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCT...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACTCACGGTTGGACTGCTaGTATTGGAAATGCCGGGGA +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYSRLDC*YWKCRG
Trigger: TCCCCGGCATTTCCAATACCAGCAGTCCAACCGTGA...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACCTTGGTGGAGCATCATaGGACACTGCCAAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYLGGAS*DTAKSS
Trigger: GCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAG...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAAGTGTGAATGGGGCCTaGGGTGCCCTTCATCATCCA +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRSVNGA*GALHHP
Trigger: TGGATGATGAAGGGCACCCCAGGCCCCATTCACACT...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACGAAAAGGGAAGGCAATaGCTCCCAAACCTGGAGCCA +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYEKGRQ*LPNLEP
Trigger: TGGCTCCAGGTTTGGGAGCCATTGCCTTCCCTTTTC...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
3UTR CAA 72 bp CTTGGTCATTGCTTCTGCTGTCGCTGCTGTGAGTTCTaGAAGCCTGTCTTCTTTAGGAGGTTGATGAATTTC +
Preference number: 4 (lower is better)
Translates to: LGHCFCCRCCEF*KPVFFRRLMNF
Trigger: GAAATTCATCAACCTCCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGCGACAGCAGAAGCAATGACCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCTTCCAGCCATCTTTCTaGATGAGATTGAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSFQPSF*MRLSPP
Trigger: AGGAGGACTCAATCTCATTCAGAAAGATGGCTGGAA...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp GCAATCCTCAGGATATCACAGGTTCTGGTGAACTTTTCTGACAACTCAAGAGCCTTCCCACGACGCTCTTaGTTTAATTCCCAAACAACT +
Preference number: 4 (lower is better)
Translates to: AILRISQVLVNFSDNSRAFPRRS*FNSQTT
Trigger: AGTTGTTTGGGAATTAAATCAAGAGCGTCGTGGGAA...GGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATATCCTGAGGATTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTAGGGAGGGGTGGCATTaGCAGGAGCTTCTTGAACTG +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSREGWH*QELLEL
Trigger: CAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCT...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACGCTGTAAGGTCCAGCTaGGACTTCAAATGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYAVRSS*DFKCSN
Trigger: GTTGGAGCATTTGAAGTCTCAGCTGGACCTTACAGC...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATAAGCCTTTCATCTTCTaGGAAGGTCTGGCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDKPFIF*EGLAVK
Trigger: CTTCACAGCCAGACCTTCTCAGAAGATGAAAGGCTT...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATGCTGCTGTGAGTTCTTaGAGCCTGTCTTCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDAAVSS*SLSSLG
Trigger: TCCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGC...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATCAAGGACTCAAACTCTaGAAGAACATGGCTGTAGGC +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDQGLKL*KNMAVG
Trigger: GCCTACAGCCATGTTCTTGCAGAGTTTGAGTCCTTG...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTAAGATGGAGCTTCTTCTaGTGCTGCACGCCGACTCCA +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLRWSFF*CCTPTP
Trigger: TGGAGTCGGCGTGCAGCAGCAGAAGAAGCTCCATCT...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCTTGATACTCTCCTTTaGTCTTTTCAAGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRELDTLL*SFQVQK
Trigger: CTTCTGGACTTGAAAAGAGCAAAGGAGAGTATCAAG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATATGGCTGTAGGCTTCTaGTATCACTGGCACAAAAGT +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNMAVGF*YHWHKS
Trigger: ACTTTTGTGCCAGTGATACCAGAAGCCTACAGCCAT...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACCACATGAATTCGTTCTaGCTTCCCACGACGCTCTTG +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYHMNSF*LPTTLL
Trigger: CAAGAGCGTCGTGGGAAGCCAGAACGAATTCATGTG...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTTTTCATGCGATGAGATaGAGCTTCTTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIFHAMR*SFFCCC
Trigger: GCAGCAGCAGAAGAAGCTCCATCTCATCGCATGAAA...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATTTTCATGCGATGAGATaGAGCTTCTTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDFHAMR*SFFCCC
Trigger: GCAGCAGCAGAAGAAGCTCCATCTCATCGCATGAAA...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAACTGGTCTTCCGGCCTaGACTTCACCAGACTGTCTA +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRTGLPA*TSPDCL
Trigger: TAGACAGTCTGGTGAAGTCCAGGCCGGAAGACCAGT...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACTGTACTTGTGCTTGGTaGAGCATCATGGGACACTGC +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYCTCAW*SIMGHC
Trigger: GCAGTGTCCCATGATGCTCCACCAAGCACAAGTACA...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
3UTR CAA 72 bp TGTGAAAGCCACTCAAGTAAAACCATTCTTAGCACCTaGGGCTCAAACAGAACCAGAGGGTCCAATAACTTG +
Preference number: 4 (lower is better)
Translates to: CESHSSKTILST*GSNRTRGSNNL
Trigger: CAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGTGCTAAGAATGGTTTTACTTGAGTGGCTTTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
3UTR CAA 72 bp CAATGTTTTTCTTGCTCTGCTGGTAATAATAGAATTTaGGAAGAGACAGCATGTGCGAGCAGCCAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: QCFSCSAGNNRI*EETACASSQVP
Trigger: TGGGACCTGGCTGCTCGCACATGCTGTCTCTTCCAAAATTCTATTATTACCAGCAGAGCAAGAAAAACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCTTCCCACGACGCTCTTaGTTTAATTCCCAAACAACT +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSFPRRS*FNSQTT
Trigger: AGTTGTTTGGGAATTAAATCAAGAGCGTCGTGGGAA...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp GCCAAAAGCAGCCATTCAAGTCTTAAAGACTCTGGTTGTAGAAGGAACTCAAGGTTCCCACGACGCTCTTaGTTTAATTCCCAAACAACT +
Preference number: 4 (lower is better)
Translates to: AKSSHSSLKDSGCRRNSRFPRRS*FNSQTT
Trigger: AGTTGTTTGGGAATTAAATCAAGAGCGTCGTGGGAA...CCTTGAGTTCCTTCTACAACCAGAGTCTTTAAGACTTGAATGGCTGCTTTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAGCTGTAAGGTCCAGCTaGGACTTCAAATGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRAVRSS*DFKCSN
Trigger: GTTGGAGCATTTGAAGTCTCAGCTGGACCTTACAGC...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGATACACAATGTTGGTaGAGGCCTCCCTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSDTQCW*RPPSSS
Trigger: AGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATC...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATCACAAAGGCAGCAGCTaGTTTTGCTTGTTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNHKGSS*FCLFQS
Trigger: ACTTTGAAACAAGCAAAAGCAGCTGCTGCCTTTGTG...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp GGGACACTGCCAAAAGCAGCCATTCAAGTCTTAAAGACTCTGGTTGTAGAAGGAACTGTTAGTACTGTCTaGACAGGAAACATCACAAAG +
Preference number: 4 (lower is better)
Translates to: GTLPKAAIQVLKTLVVEGTVSTV*TGNITK
Trigger: CTTTGTGATGTTTCCTGTGCAGACAGTACTAACAGT...TCCTTCTACAACCAGAGTCTTTAAGACTTGAATGGCTGCTTTTGGCAGTGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGGAGCTTCTTGAACTaGTGTGTACTGAGCACTTCC +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYRSFLN*CVLSTS
Trigger: GGAAGTGCTCAGTACACACCAGTTCAAGAAGCTCCT...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACGTAATAATAGAATTTTaGAAGAGACAGCATGTGCGA +
Preference number: 4 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHVIIEF*KRQHVR
Trigger: TCGCACATGCTGTCTCTTCCAAAATTCTATTATTAC...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATCATCCTGAATATCCTTaGCTTCACTCCAAAGAAGAA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNHPEYP*LHSKEE
Trigger: TTCTTCTTTGGAGTGAAGTCAAGGATATTCAGGATG...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTCTGTCTTTAACAGCCTaGAGAGACACGAGGGGAGAT +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSLSLTA*RDTRGD
Trigger: ATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGACAG...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATTATCACAGGTTCTGGTaGACTTTTCTGACAACTCAA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNYHRFW*TFLTTQ
Trigger: TTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATA...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp ACAAGAATCTTCGTCGGACTGACTGCCTCTTCTACTACTGATGATACGATAAATGGCAGCAGCTGCTTTTaGTTGTTTCAAAGTGTTGAG +
Preference number: 4 (lower is better)
Translates to: TRIFVGLTASSTTDDTINGSSCF*LFQSVE
Trigger: CTCAACACTTTGAAACAAGCAAAAGCAGCTGCTGCC...ATTTATCGTATCATCAGTAGTAGAAGAGGCAGTCAGTCCGACGAAGATTCTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAGGCTGCTCCTCTTCCTaGTGTGAGGCAAATTCTTTA +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRGCSSS*CEANSL
Trigger: TAAAGAATTTGCCTCACACCAGGAAGAGGAGCAGCC...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAGACATCACTGGACTGTaGGAAGCACTCTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRDITGL*EALSSF
Trigger: GAATGAAGAGAGTGCTTCCCACAGTCCAGTGATGTC...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAGAGGGTCCAATAACTTaGTCATTGCTTCTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYREGPIT*SLLLLS
Trigger: CGACAGCAGAAGCAATGACCAAGTTATTGGACCCTC...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTTGTACTTGTGCTTGGTaGAGCATCATGGGACACTGC +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSCTCAW*SIMGHC
Trigger: GCAGTGTCCCATGATGCTCCACCAAGCACAAGTACA...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTACACTGTACTTGTGCTTaGTGGAGCATCATGGGACAC +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLHCTCA*WSIMGH
Trigger: GTGTCCCATGATGCTCCACCAAGCACAAGTACAGTG...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TATTGGAAATGCCGGGGAAGTCTTTCATGGCAAATGTTTTCTCTAACTGTGAAAACAACTACAAGACCTTaGCTGGTAGCTACAGCAACA +
Preference number: 4 (lower is better)
Translates to: YWKCRGSLSWQMFSLTVKTTTRP*LVATAT
Trigger: TGTTGCTGTAGCTACCAGTCAAGGTCTTGTAGTTGT...TTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTCATCCTGAATATCCTTaGCTTCACTCCAAAGAAGAA +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIHPEYP*LHSKEE
Trigger: TTCTTCTTTGGAGTGAAGTCAAGGATATTCAGGATG...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR TCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTAAGCCTTTCATCTTCTaGGAAGGTCTGGCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSKPFIF*EGLAVK
Trigger: CTTCACAGCCAGACCTTCTCAGAAGATGAAAGGCTT...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTACTGTTAGTACTGTCTaGACAGGAAACATCACAAAG +
Preference number: 4 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDITVSTV*TGNITK
Trigger: CTTTGTGATGTTTCCTGTGCAGACAGTACTAACAGT...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCATGCTCCAACTTATCTaGAGTCAATGTTTTTCTTGC +
Preference number: 4 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSMLQLI*SQCFSC
Trigger: GCAAGAAAAACATTGACTGCAGATAAGTTGGAGCAT...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAATGGCTGTAGGCTTCTaGTATCACTGGCACAAAAGT +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRMAVGF*YHWHKS
Trigger: ACTTTTGTGCCAGTGATACCAGAAGCCTACAGCCAT...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGAGGGTCCAATAACTTaGTCATTGCTTCTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSEGPIT*SLLLLS
Trigger: CGACAGCAGAAGCAATGACCAAGTTATTGGACCCTC...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTATTCCAGCCATCTTTCTaGATGAGATTGAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLFQPSF*MRLSPP
Trigger: AGGAGGACTCAATCTCATTCAGAAAGATGGCTGGAA...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTAACAACTACAAGACCTTaGCTGGTAGCTACAGCAACA +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLTTTRP*LVATAT
Trigger: TGTTGCTGTAGCTACCAGTCAAGGTCTTGTAGTTGT...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACTATCACAGGTTCTGGTaGACTTTTCTGACAACTCAA +
Preference number: 4 (lower is better)
Translates to: LQFTILVMSSCTKASAPYYHRFW*TFLTTQ
Trigger: TTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATA...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATGCTAAAACTTTCATaGGATGAGATGGAGCTTCTT +
Preference number: 4 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDMLKLS*DEMELL
Trigger: AAGAAGCTCCATCTCATCGCATGAAAGTTTTAGCAT...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGTAATAATAGAATTTTaGAAGAGACAGCATGTGCGA +
Preference number: 4 (lower is better)
Translates to: SSCTKASAPYRSASVETNVIIEF*KRQHVR
Trigger: TCGCACATGCTGTCTCTTCCAAAATTCTATTATTAC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTCTCGGTCAGCATCCTTaGATTCAAAAGGCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSLGQHP*IQKALS
Trigger: TGAAAGAGCCTTTTGAATCCAAGGATGCTGACCGAG...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTATTCCCACGACGCTCTTaGTTTAATTCCCAAACAACT +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLFPRRS*FNSQTT
Trigger: AGTTGTTTGGGAATTAAATCAAGAGCGTCGTGGGAA...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR TCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTATACGCTTTCCATTGCTaGAGTCAACACATTCAGTTC +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLYAFHC*SQHIQF
Trigger: GAACTGAATGTGTTGACTTCAGCAATGGAAAGCGTA...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR TCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATATCACAGGTTCTGGTaGACTTTTCTGACAACTCAA +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRYHRFW*TFLTTQ
Trigger: TTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATA...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR GCA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTACACAAAGGCAGCAGCTaGTTTTGCTTGTTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLHKGSS*FCLFQS
Trigger: ACTTTGAAACAAGCAAAAGCAGCTGCTGCCTTTGTG...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTCACAAAGGCAGCAGCTaGTTTTGCTTGTTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSHKGSS*FCLFQS
Trigger: ACTTTGAAACAAGCAAAAGCAGCTGCTGCCTTTGTG...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTACTGTTAGTACTGTCTaGACAGGAAACATCACAAAG +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSTVSTV*TGNITK
Trigger: CTTTGTGATGTTTCCTGTGCAGACAGTACTAACAGT...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR GCA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGAATGCTCCAACTTATCTaGAGTCAATGTTTTTCTTGC +
Preference number: 4 (lower is better)
Translates to: QFTILVMSSCTKASAPYRMLQLI*SQCFSC
Trigger: GCAAGAAAAACATTGACTGCAGATAAGTTGGAGCAT...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR GCA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTATGCTCCAACTTATCTaGAGTCAATGTTTTTCTTGC +
Preference number: 4 (lower is better)
Translates to: FTILVMSSCTKASAPYRSMLQLI*SQCFSC
Trigger: GCAAGAAAAACATTGACTGCAGATAAGTTGGAGCAT...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp AGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTAGCTAGGCAATCTGAGAGATaGCCCCTTCCCGGTGAGAGA +
Preference number: 5 (lower is better)
Translates to: RPHSCSSDQARSGPMALARQSER*PLPGER
Trigger: TCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCT...AGCTAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AGGAGGGCCACATTCTCCACATTGATAGGGGCTGGCCCATCACTGAGGCTCCCGCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACA +
Preference number: 5 (lower is better)
Translates to: RRATFSTLIGAGPSLRLPPLYLC*VEHHGT
Trigger: TGTCCCATGATGCTCCACCAAGCACAAGTACAGTGG...CGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGCCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CAA 90 bp GACAACTCAAGAGCCAGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACA +
Preference number: 5 (lower is better)
Translates to: DNSRARPHSCSSDQARSGPLYLC*VEHHGT
Trigger: TGTCCCATGATGCTCCACCAAGCACAAGTACAGTGG...CCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCTGGCTCTTGAGTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CAA 90 bp GACCAGGCCCGATCTGGGCCCATGGCCTTAGCTAACAGGAGGGCCACATTCTCCCATCATCCACTGTACTaGTGCTTGGTGGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: DQARSGPMALANRRATFSHHPLY*CLVEHH
Trigger: ATGATGCTCCACCAAGCACAAGTACAGTGGATGATG...GGAGAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGATCGGGCCTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS TCA 90 bp AGATTGCCCCTTCCCTCAGACGACTGGAGTCCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACTCAAACTCTGCAAGAACATGGCTGT +
Preference number: 5 (lower is better)
Translates to: RLPLPSDDWSPASGL*VTDPRTQTLQEHGC
Trigger: ACAGCCATGTTCTTGCAGAGTTTGAGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGGACTCCAGTCGTCTGAGGGAAGGGGCAATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211471.2
CDS-3UTR CAA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGACCAATAACTTGGTCATaGCTTCTGCTGTCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRPITWS*LLLSLL
Trigger: CAGCAGCGACAGCAGAAGCAATGACCAAGTTATTGG...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS TCA 90 bp CTATGCTGGTACACCTCAGACGACTGGAGTCCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACTCAAACTCTGCAAGAACATGGCTGT +
Preference number: 5 (lower is better)
Translates to: LCWYTSDDWSPASGL*VTDPRTQTLQEHGC
Trigger: ACAGCCATGTTCTTGCAGAGTTTGAGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGGACTCCAGTCGTCTGAGGTGTACCAGCATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCGCTGCTGTGAGTTCTaGAAGCCTGTCTTCTTTAGG +
Preference number: 5 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFRCCEF*KPVFFR
Trigger: CCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGCG...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACA +
Preference number: 5 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGPLYLC*VEHHGT
Trigger: TGTCCCATGATGCTCCACCAAGCACAAGTACAGTGG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCAGGGATCCACCCATaGTCCCCTTCCATCAGGCTT +
Preference number: 5 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTSGIHP*SPSIRL
Trigger: AAGCCTGATGGAAGGGGACAATGGGTGGATCCCTGA...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCGCCACATTCTCCACATaGATAGGGGCTGGCCCATCA +
Preference number: 5 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTATFST*IGAGPS
Trigger: TGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGC...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS CCA 90 bp AGGCCAGAAACTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: RPETGVPFIIHCTCA*WSIMGHCQKQPFKS
Trigger: AGACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGTTTCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS-3UTR CAA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACAGGCAATCTGAGAGATaGCCCCTTCCCGGTGAGAGA +
Preference number: 5 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHRQSER*PLPGER
Trigger: TCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCT...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AGACCACACTCCTGTAGCAGTGACCAGGCCCGATCTGGGCCCATGGCCTTAGCTGCTTGTTTCAAAGTGTaGAGTTTGATGGCAGATACT +
Preference number: 5 (lower is better)
Translates to: RPHSCSSDQARSGPMALAACFKV*SLMADT
Trigger: AGTATCTGCCATCAAACTCAACACTTTGAAACAAGC...AGCTAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACTCAGGGATCCACCCATaGTCCCCTTCCATCAGGCTT +
Preference number: 5 (lower is better)
Translates to: NQFPDSWCTQRIRPSREHSGIHP*SPSIRL
Trigger: AAGCCTGATGGAAGGGGACAATGGGTGGATCCCTGA...GTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS TCA 90 bp AGCCGTGTCCCAACAGAGGGCAGTAACTTTTCGGCCTTTGTGTTCTaGGGACACATGAATTCGTTCTGGCTTCCCACGACGCTCTTGATT +
Preference number: 5 (lower is better)
Translates to: SRVPTEGSNFSAFVF*GHMNSFWLPTTLLI
Trigger: AATCAAGAGCGTCGTGGGAAGCCAGAACGAATTCATGTGTCCTCAGAACACAAAGGCCGAAAAGTTACTGCCCTCTGTTGGGACACGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
ENSMUST00000211471.2
CDS-3UTR CAA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCAGAGAGAAACAGCCTTaGCTTCCAGCCATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGREKQP*LPAIFL
Trigger: CAGAAAGATGGCTGGAAGCAAAGGCTGTTTCTCTCT...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp GTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAAGAGAGAAACAGCCTTaGCTTCCAGCCATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: VTPGELALCSWSVVDVGEREKQP*LPAIFL
Trigger: CAGAAAGATGGCTGGAAGCAAAGGCTGTTTCTCTCT...TTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGAGGCAATCTGAGAGATaGCCCCTTCCCGGTGAGAGA +
Preference number: 5 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRERQSER*PLPGER
Trigger: TCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCT...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGATTCAAAGTGTTGAGTTaGATGGCAGATACTTTGCCC +
Preference number: 5 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRFKVLS*MADTLP
Trigger: GGGCAAAGTATCTGCCATCAAACTCAACACTTTGAA...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp GAGGGCCACATTCTCCACATTGATAGGGGCTGGCCCATCACTGAGGCTCCCGTTGCTTGTTTCAAAGTGTaGAGTTTGATGGCAGATACT +
Preference number: 5 (lower is better)
Translates to: EGHILHIDRGWPITEAPVACFKV*SLMADT
Trigger: AGTATCTGCCATCAAACTCAACACTTTGAAACAAGC...AACGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCCGCTGCTGTGAGTTCTaGAAGCCTGTCTTCTTTAGG +
Preference number: 5 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSRCCEF*KPVFFR
Trigger: CCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGCG...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCCCAATAACTTGGTCATaGCTTCTGCTGTCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTPITWS*LLLSLL
Trigger: CAGCAGCGACAGCAGAAGCAATGACCAAGTTATTGG...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCTTCAGATACACAATGTaGGTGAAGGCCTCCCTCCTC +
Preference number: 5 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSFRYTM*VKASLL
Trigger: GAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAA...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTTCAGATACACAATGTaGGTGAAGGCCTCCCTCCTC +
Preference number: 5 (lower is better)
Translates to: TNSLIHGVHKESDPAGSTFRYTM*VKASLL
Trigger: GAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAA...GGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGGCCACATTCTCCACATaGATAGGGGCTGGCCCATCA +
Preference number: 5 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREATFST*IGAGPS
Trigger: TGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGC...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp AGATCCCCAACTAGGCCTGCTGCGACCAGAGGAAGCGGTCACACTTCTCAAGCATCAGTCATTTTCTCTTaGGTTGTAAAGTCTGGGGTG +
Preference number: 5 (lower is better)
Translates to: RSPTRPAATRGSGHTSQASVIFS*VVKSGV
Trigger: CACCCCAGACTTTACAACCAAAGAGAAAATGACTGA...TGCTTGAGAAGTGTGACCGCTTCCTCTGGTCGCAGCAGGCCTAGTTGGGGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS TCA 90 bp GGCAAAGCTGTGCGATGTCGGAGGGCGAAATGGACGGATAAAACTTaGTGCAAGCTCGAAGGGCTGACTCCCCAAATCTATCATACAACN +
Preference number: 5 (lower is better)
Translates to: GKAVRCRRAKWTDKT*CKLEGLTPQIYHTT
Trigger: NGTTGTATGATAGATTTGGGGAGTCAGCCCTTCGAGCTTGCATCAAGTTTTATCCGTCCATTTCGCCCTCCGACATCGCACAGCTTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211571.2
CDS GCA 90 bp AGCAACATAATCATCATCATGAGAGCAGCAGGCAATCTGAGAGATTaGCCCTTCCCGGTGAGAGAGAAACAGCCTTTGCTTCCAGCCATC +
Preference number: 5 (lower is better)
Translates to: SNIIIIMRAAGNLRD*PFPVREKQPLLPAI
Trigger: GATGGCTGGAAGCAAAGGCTGTTTCTCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCTGCTGCTCTCATGATGATGATTATGTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS CCA 90 bp GTTGTAAAGTCTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: VVKSGVPFIIHCTCA*WSIMGHCQKQPFKS
Trigger: AGACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGACTTTACAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS CCA 90 bp AGGAATGCTGGAGCATTGAAAAGGGAAGGCAATGGCTCCCAAACCTaGAGCCATCTTTCATTCCTTCATTCCTATTGGCACCACAGCCCT +
Preference number: 5 (lower is better)
Translates to: RNAGALKREGNGSQT*SHLSFLHSYWHHSP
Trigger: AGGGCTGTGGTGCCAATAGGAATGAAGGAATGAAAGATGGCTCCAGGTTTGGGAGCCATTGCCTTCCCTTTTCAATGCTCCAGCATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp CATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCCAGCTTGTTTCAAAGTGTaGAGTTTGATGGCAGATACT +
Preference number: 5 (lower is better)
Translates to: HGVHKESDPAGSTSRLLPACFKV*SLMADT
Trigger: AGTATCTGCCATCAAACTCAACACTTTGAAACAAGC...TGGAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCAGGCGGTGATGAGAAGCAGCTGCTTTTGCTaGTTTCAAAGTGTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: NSEVTEPQKPRAGQAVMRSSCFC*FQSVEF
Trigger: AAACTCAACACTTTGAAACAAGCAAAAGCAGCTGCT...TCTCATCACCGCCTGGCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACA +
Preference number: 5 (lower is better)
Translates to: RNQFPDSWCTQRIRPSREPLYLC*VEHHGT
Trigger: TGTCCCATGATGCTCCACCAAGCACAAGTACAGTGG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp AATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCCATCATCCACTGTACTaGTGCTTGGTGGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: NSLIHGVHKESDPAGSTSHHPLY*CLVEHH
Trigger: ATGATGCTCCACCAAGCACAAGTACAGTGGATGATG...GGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCCTTAACAGGCGTTCCTaGACTTCACTCCAAAGAAGA +
Preference number: 5 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGLNRRS*TSLQRR
Trigger: TCTTCTTTGGAGTGAAGTCAAGGAACGCCTGTTAAG...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107653.8
CDS CCA 90 bp GCTTGTTTCAAAGTGTTGAGTTTGATGGCAGATACTTTGCCCACATaGTCACCGACAAAGACTCTCAGAACAGCCGTGTCCCAACAGAGG +
Preference number: 5 (lower is better)
Translates to: ACFKVLSLMADTLPT*SPTKTLRTAVSQQR
Trigger: CCTCTGTTGGGACACGGCTGTTCTGAGAGTCTTTGTCGGTGACCATGTGGGCAAAGTATCTGCCATCAAACTCAACACTTTGAAACAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
ENSMUST00000211471.2
CDS-3UTR CAA 90 bp GTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAATTCAAAGTGTTGAGTTaGATGGCAGATACTTTGCCC +
Preference number: 5 (lower is better)
Translates to: VTPGELALCSWSVVDVGEFKVLS*MADTLP
Trigger: GGGCAAAGTATCTGCCATCAAACTCAACACTTTGAA...TTCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp TTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCACCTCCAGGCTGCTTCAGCAGCTGCTTTTGCTaGTTTCAAAGTGTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: FMVYTKNPTQQGAPPGCFSSCFC*FQSVEF
Trigger: AAACTCAACACTTTGAAACAAGCAAAAGCAGCTGCT...GAAGCAGCCTGGAGGTGCTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTAGGCAATCTGAGAGATaGCCCCTTCCCGGTGAGAGA +
Preference number: 5 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIRQSER*PLPGER
Trigger: TCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCT...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp AGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGGGAGCTAAGATGCAAGAGTTaGGGGAATGCCAAAGACTGG +
Preference number: 5 (lower is better)
Translates to: RNQFPDSWCTQRIRPSRELRCKS*GNAKDW
Trigger: CCAGTCTTTGGCATTCCCCAAACTCTTGCATCTTAG...CTCCCTGCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp ACTGCTTCCTTGAGAAACTCTGAGGTCACAGAGCCACAAAAGCCAAGGGCTGGCGGTAATAATAGAATTTaGGAAGAGACAGCATGTGCG +
Preference number: 5 (lower is better)
Translates to: TASLRNSEVTEPQKPRAGGNNRI*EETACA
Trigger: CGCACATGCTGTCTCTTCCAAAATTCTATTATTACC...GCCAGCCCTTGGCTTTTGTGGCTCTGTGACCTCAGAGTTTCTCAAGGAAGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp AGTGACTCCTGGGGAGCTGGCCTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAGGTAATAATAGAATTTaGGAAGAGACAGCATGTGCG +
Preference number: 5 (lower is better)
Translates to: SDSWGAGLVLLVCSRCRRGNNRI*EETACA
Trigger: CGCACATGCTGTCTCTTCCAAAATTCTATTATTACC...TCTCCTACATCTACTACAGACCAAGAGCACAAGGCCAGCTCCCCAGGAGTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACA +
Preference number: 5 (lower is better)
Translates to: SSCTKASAPYRSASVETNPLYLC*VEHHGT
Trigger: TGTCCCATGATGCTCCACCAAGCACAAGTACAGTGG...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGCTGGCCTTGTGCTCTaGGTCTGTAGTAGATGTAGG +
Preference number: 5 (lower is better)
Translates to: SSCTKASAPYRSASVETNAGLVL*VCSRCR
Trigger: CCTACATCTACTACAGACCAAGAGCACAAGGCCAGC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ACAAGAATCTTCGTCGGACTGACTGCCTCTTCTACTACTGATGATACGATAAATAGGCAATCTGAGAGATaGCCCCTTCCCGGTGAGAGA +
Preference number: 5 (lower is better)
Translates to: TRIFVGLTASSTTDDTINRQSER*PLPGER
Trigger: TCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCT...ATTTATCGTATCATCAGTAGTAGAAGAGGCAGTCAGTCCGACGAAGATTCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCCGCTGCTGTGAGTTCTaGAAGCCTGTCTTCTTTAGG +
Preference number: 5 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSRCCEF*KPVFFR
Trigger: CCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGCG...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp GCAATCCTCAGGATATCACAGGTTCTGGTGAACTTTTCTGACAACTCAAGAGCCCATCATCCACTGTACTaGTGCTTGGTGGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: AILRISQVLVNFSDNSRAHHPLY*CLVEHH
Trigger: ATGATGCTCCACCAAGCACAAGTACAGTGGATGATG...GGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATATCCTGAGGATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138480.2
ENSMUST00000211571.2
CDS-3UTR CAA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCTTCAGATACACAATGTaGGTGAAGGCCTCCCTCCTC +
Preference number: 5 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSFRYTM*VKASLL
Trigger: GAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAA...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACTCAGGGATCCACCCATaGTCCCCTTCCATCAGGCTT +
Preference number: 5 (lower is better)
Translates to: LQFTILVMSSCTKASAPYSGIHP*SPSIRL
Trigger: AAGCCTGATGGAAGGGGACAATGGGTGGATCCCTGA...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTGCTGGCCTTGTGCTCTaGGTCTGTAGTAGATGTAGG +
Preference number: 5 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIAGLVL*VCSRCR
Trigger: CCTACATCTACTACAGACCAAGAGCACAAGGCCAGC...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACGCCACATTCTCCACATaGATAGGGGCTGGCCCATCA +
Preference number: 5 (lower is better)
Translates to: LQFTILVMSSCTKASAPYATFST*IGAGPS
Trigger: TGATGGGCCAGCCCCTATCAATGTGGAGAATGTGGC...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCAGAGAGAAACAGCCTTaGCTTCCAGCCATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSREKQP*LPAIFL
Trigger: CAGAAAGATGGCTGGAAGCAAAGGCTGTTTCTCTCT...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS CCA 90 bp TCTCTAACTGTGAAAGCCACTCAAGTAAAACCATTCTTAGCACCTTaGGCTCAAACAGAACCAGAGGGTCCAATAACTTGGTCTCAGTGT +
Preference number: 5 (lower is better)
Translates to: SLTVKATQVKPFLAP*AQTEPEGPITWSQC
Trigger: ACACTGAGACCAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGTGCTAAGAATGGTTTTACTTGAGTGGCTTTCACAGTTAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS-3UTR CAA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATAGAGAGAAACAGCCTTaGCTTCCAGCCATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDREKQP*LPAIFL
Trigger: CAGAAAGATGGCTGGAAGCAAAGGCTGTTTCTCTCT...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp CTTGTGCTCTTGGTCTGTAGTAGATGTAGGAGAAGCTTCCATTCCTCCAAGGTCAGCAGCTGCTTTTGCTaGTTTCAAAGTGTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: LVLLVCSRCRRSFHSSKVSSCFC*FQSVEF
Trigger: AAACTCAACACTTTGAAACAAGCAAAAGCAGCTGCT...GACCTTGGAGGAATGGAAGCTTCTCCTACATCTACTACAGACCAAGAGCACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTCTAAGATGCAAGAGTTaGGGGAATGCCAAAGACTGG +
Preference number: 5 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDILRCKS*GNAKDW
Trigger: CCAGTCTTTGGCATTCCCCAAACTCTTGCATCTTAG...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp GTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATATTCATCATCCACTGTACTaGTGCTTGGTGGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: VMAQTLNSNIQEAEAVDIHHPLY*CLVEHH
Trigger: ATGATGCTCCACCAAGCACAAGTACAGTGGATGATG...AATATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCTTCAAAGTGTTGAGTTaGATGGCAGATACTTTGCCC +
Preference number: 5 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSFKVLS*MADTLP
Trigger: GGGCAAAGTATCTGCCATCAAACTCAACACTTTGAA...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp TCCATTGCTGAAGTCAACACATTCAGTTCCAAGCACAACGTTGTCAATTCCGCCAGCAGCTGCTTTTGCTaGTTTCAAAGTGTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: SIAEVNTFSSKHNVVNSASSCFC*FQSVEF
Trigger: AAACTCAACACTTTGAAACAAGCAAAAGCAGCTGCT...GGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACCTAAGATGCAAGAGTTaGGGGAATGCCAAAGACTGG +
Preference number: 5 (lower is better)
Translates to: LQFTILVMSSCTKASAPYLRCKS*GNAKDW
Trigger: CCAGTCTTTGGCATTCCCCAAACTCTTGCATCTTAG...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACCATCATCCACTGTACTaGTGCTTGGTGGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: LQFTILVMSSCTKASAPYHHPLY*CLVEHH
Trigger: ATGATGCTCCACCAAGCACAAGTACAGTGGATGATG...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCTGGCCTTGTGCTCTaGGTCTGTAGTAGATGTAGG +
Preference number: 5 (lower is better)
Translates to: FTILVMSSCTKASAPYRSAGLVL*VCSRCR
Trigger: CCTACATCTACTACAGACCAAGAGCACAAGGCCAGC...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGACTAAGATGCAAGAGTTaGGGGAATGCCAAAGACTGG +
Preference number: 5 (lower is better)
Translates to: QFTILVMSSCTKASAPYRLRCKS*GNAKDW
Trigger: CCAGTCTTTGGCATTCCCCAAACTCTTGCATCTTAG...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp ATCAGTAGAAACCAATTCCCTGATTCATGGTGTACACAAAGAATCCGACCCAGCGTCTTCTTTAGGAGGTaGATGAATTTCTTTCTCCTC +
Preference number: 5 (lower is better)
Translates to: ISRNQFPDSWCTQRIRPSVFFRR*MNFFLL
Trigger: GAGGAGAAAGAAATTCATCAACCTCCTAAAGAAGAC...GCTGGGTCGGATTCTTTGTGTACACCATGAATCAGGGAATTGGTTTCTACTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp TCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCATCAGTAGAAACCAATGTCTTCTTTAGGAGGTaGATGAATTTCTTTCTCCTC +
Preference number: 5 (lower is better)
Translates to: SSCTKASAPYRSASVETNVFFRR*MNFFLL
Trigger: GAGGAGAAAGAAATTCATCAACCTCCTAAAGAAGAC...ATTGGTTTCTACTGATGCAGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTCCAATAACTTGGTCATaGCTTCTGCTGTCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: FTILVMSSCTKASAPYRSPITWS*LLLSLL
Trigger: CAGCAGCGACAGCAGAAGCAATGACCAAGTTATTGG...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS-3UTR CAA 90 bp TACATACTGGAAAAATACTTGAAACTGAGCTCAACTCAGATATGGGCAGTCTTAAGAGAGAAACAGCCTTaGCTTCCAGCCATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: YILEKYLKLSSTQIWAVLREKQP*LPAIFL
Trigger: CAGAAAGATGGCTGGAAGCAAAGGCTGTTTCTCTCT...TAAGACTGCCCATATCTGAGTTGAGCTCAGTTTCAAGTATTTTTCCAGTATGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATGCTTGTTTCAAAGTGTaGAGTTTGATGGCAGATACT +
Preference number: 5 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDACFKV*SLMADT
Trigger: AGTATCTGCCATCAAACTCAACACTTTGAAACAAGC...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATAGCAGCTGCTTTTGCTaGTTTCAAAGTGTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDSSCFC*FQSVEF
Trigger: AAACTCAACACTTTGAAACAAGCAAAAGCAGCTGCT...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp TATGTGATGGCACAAACCCTTAATTCTAACATTCAGGAGGCAGAGGCAGTAGATGGTAATAATAGAATTTaGGAAGAGACAGCATGTGCG +
Preference number: 5 (lower is better)
Translates to: YVMAQTLNSNIQEAEAVDGNNRI*EETACA
Trigger: CGCACATGCTGTCTCTTCCAAAATTCTATTATTACC...ATCTACTGCCTCTGCCTCCTGAATGTTAGAATTAAGGGTTTGTGCCATCACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp CAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATTCAAAGTGTTGAGTTaGATGGCAGATACTTTGCCC +
Preference number: 5 (lower is better)
Translates to: QFTILVMSSCTKASAPYRFKVLS*MADTLP
Trigger: GGGCAAAGTATCTGCCATCAAACTCAACACTTTGAA...TCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp CTCCAGTTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACGGTAATAATAGAATTTaGGAAGAGACAGCATGTGCG +
Preference number: 5 (lower is better)
Translates to: LQFTILVMSSCTKASAPYGNNRI*EETACA
Trigger: CGCACATGCTGTCTCTTCCAAAATTCTATTATTACC...GTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAACTGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
CDS-3UTR CAA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGCTTGTTTCAAAGTGTaGAGTTTGATGGCAGATACT +
Preference number: 5 (lower is better)
Translates to: FTILVMSSCTKASAPYRSACFKV*SLMADT
Trigger: AGTATCTGCCATCAAACTCAACACTTTGAAACAAGC...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000211347.2
CDS-3UTR CAA 90 bp TTTACAATATTAGTTATGTCTTCCTGTACCAAAGCTTCTGCTCCCTACAGATCTGTCTTCTTTAGGAGGTaGATGAATTTCTTTCTCCTC +
Preference number: 5 (lower is better)
Translates to: FTILVMSSCTKASAPYRSVFFRR*MNFFLL
Trigger: GAGGAGAAAGAAATTCATCAACCTCCTAAAGAAGAC...AGATCTGTAGGGAGCAGAAGCTTTGGTACAGGAAGACATAACTAATATTGTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
CDS GCA 72 bp CTTGGTCTCAGTGTCCTCCTCCAGAGGGCAGGTGACTaGACTCACTTCCTCTTCATGTGCTCGGTCAGCATC +
Preference number: 6 (lower is better)
Translates to: LGLSVLLQRAGD*THFLFMCSVSI
Trigger: GATGCTGACCGAGCACATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGGAGGACACTGAGACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS CCA 72 bp TGCCTAACGCCAACCATTTCCGAGACACAGCTATGCTaGTACACCTCAGACGACTGGAGTCCAGCCTCAGGG +
Preference number: 6 (lower is better)
Translates to: CLTPTISETQLC*YTSDDWSPASG
Trigger: CCCTGAGGCTGGACTCCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTCGGAAATGGTTGGCGTTAGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS GCA 72 bp TGCTGCCTAACGCCAACCATTTCCGAGACACAGCTATaGTGGTACACCTCAGACGACTGGAGTCCAGCCTCA +
Preference number: 6 (lower is better)
Translates to: CCLTPTISETQL*WYTSDDWSPAS
Trigger: TGAGGCTGGACTCCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTCGGAAATGGTTGGCGTTAGGCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS CAA 72 bp GTCTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACACTGCCAAAAGCAGCC +
Preference number: 6 (lower is better)
Translates to: VWGALHHPLYLC*VEHHGTLPKAA
Trigger: GGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS TCA 72 bp ATAACTTGGTCTCAGTGTCCTCCTCCAGAGGGCAGGTaGCTGCACTCACTTCCTCTTCATGTGCTCGGTCAG +
Preference number: 6 (lower is better)
Translates to: ITWSQCPPPEGR*LHSLPLHVLGQ
Trigger: CTGACCGAGCACATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGGAGGACACTGAGACCAAGTTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS TCA 72 bp CTTCCCTCAGACGACTGGAGTCCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACTCAAACTCTGCAAGAA +
Preference number: 6 (lower is better)
Translates to: LPSDDWSPASGL*VTDPRTQTLQE
Trigger: TTCTTGCAGAGTTTGAGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGGACTCCAGTCGTCTGAGGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211471.2
CDS GCA 72 bp ATCATCATCATGAGAGCAGCAGGCAATCTGAGAGATTaGCCCTTCCCTCAGACGACTGGAGTCCAGCCTCAG +
Preference number: 6 (lower is better)
Translates to: IIIMRAAGNLRD*PFPQTTGVQPQ
Trigger: CTGAGGCTGGACTCCAGTCGTCTGAGGGAAGGGGCAATCTCTCAGATTGCCTGCTGCTCTCATGATGATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211471.2
CDS CCA 72 bp TCTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACACTGCCAAAAGCAGCCA +
Preference number: 6 (lower is better)
Translates to: SGVPFIIHCTCA*WSIMGHCQKQP
Trigger: TGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS CCA 72 bp ACTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTTaGTGGAGCATCATGGGACACTGCCAAAAGCAGCCA +
Preference number: 6 (lower is better)
Translates to: TGVPFIIHCTCA*WSIMGHCQKQP
Trigger: TGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS CAA 72 bp ACCTTGGGCTCAAACAGAACCAGAGGGTCCAATAACTaGGTCTCAGTGTCCTCCTCCAGAGGGCAGGTGACT +
Preference number: 6 (lower is better)
Translates to: TLGSNRTRGSNN*VSVSSSRGQVT
Trigger: AGTCACCTGCCCTCTGGAGGAGGACACTGAGACCAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS CAA 72 bp AACTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACACTGCCAAAAGCAGCC +
Preference number: 6 (lower is better)
Translates to: NWGALHHPLYLC*VEHHGTLPKAA
Trigger: GGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS CAA 90 bp CAGGCCAGAAACTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATTCAAGTC +
Preference number: 6 (lower is better)
Translates to: QARNWGALHHPLYLC*VEHHGTLPKAAIQV
Trigger: GACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGTTTCTGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS TCA 72 bp TACACCTCAGACGACTGGAGTCCAGCCTCAGGGCTGTaGGTAACGGATCCAAGGACTCAAACTCTGCAAGAA +
Preference number: 6 (lower is better)
Translates to: YTSDDWSPASGL*VTDPRTQTLQE
Trigger: TTCTTGCAGAGTTTGAGTCCTTGGATCCGTTACTCACAGCCCTGAGGCTGGACTCCAGTCGTCTGAGGTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS CAA 72 bp GCCAGAAACTGGGGTGCCCTTCATCATCCACTGTACTaGTGCTTGGTGGAGCATCATGGGACACTGCCAAAA +
Preference number: 6 (lower is better)
Translates to: ARNWGALHHPLY*CLVEHHGTLPK
Trigger: TTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGTTTCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS CAA 72 bp AATCATCATCATGAGAGCAGCAGGCAATCTGAGAGATaGCCCCTTCCCTCAGACGACTGGAGTCCAGCCTCA +
Preference number: 6 (lower is better)
Translates to: NHHHESSRQSER*PLPSDDWSPAS
Trigger: TGAGGCTGGACTCCAGTCGTCTGAGGGAAGGGGCAATCTCTCAGATTGCCTGCTGCTCTCATGATGATGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211471.2
CDS CAA 90 bp GATATCCAGGCCAGAAACTGGGGTGCCCTTCATCATCCACTGTACTaGTGCTTGGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATT +
Preference number: 6 (lower is better)
Translates to: DIQARNWGALHHPLY*CLVEHHGTLPKAAI
Trigger: AATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGTTTCTGGCCTGGATATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS CAA 90 bp GGCAATCTGAGAGATTGCCCCTTCCCGGTGAGAGAGAAACAGCCTTaGCTTCCAGCCATCTTTCTGAATGAGATTGAGTCCTCCTCCTGT +
Preference number: 6 (lower is better)
Translates to: GNLRDCPFPVREKQP*LPAIFLNEIESSSC
Trigger: ACAGGAGGAGGACTCAATCTCATTCAGAAAGATGGCTGGAAGCAAAGGCTGTTTCTCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS CAA 90 bp GGTTGTAAAGTCTGGGGTGCCCTTCATCATCCACTGTACTTGTGCTaGGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATTCAAGTC +
Preference number: 6 (lower is better)
Translates to: GCKVWGALHHPLYLC*VEHHGTLPKAAIQV
Trigger: GACTTGAATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGACTTTACAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS TCA 72 bp CCAACAGAGGGCAGTAACTTTTCGGCCTTTGTGTTCTaGGGACACATGAATTCGTTCTGGCTTCCCACGACG +
Preference number: 6 (lower is better)
Translates to: PTEGSNFSAFVF*GHMNSFWLPTT
Trigger: CGTCGTGGGAAGCCAGAACGAATTCATGTGTCCTCAGAACACAAAGGCCGAAAAGTTACTGCCCTCTGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
ENSMUST00000211471.2
CDS CAA 90 bp CAGCAACATAATCATCATCATGAGAGCAGCAGGCAATCTGAGAGATaGCCCCTTCCCGGTGAGAGAGAAACAGCCTTTGCTTCCAGCCAT +
Preference number: 6 (lower is better)
Translates to: QQHNHHHESSRQSER*PLPGERETAFASSH
Trigger: ATGGCTGGAAGCAAAGGCTGTTTCTCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCTGCTGCTCTCATGATGATGATTATGTTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS CAA 90 bp CTCTTTGGTTGTAAAGTCTGGGGTGCCCTTCATCATCCACTGTACTaGTGCTTGGTGGAGCATCATGGGACACTGCCAAAAGCAGCCATT +
Preference number: 6 (lower is better)
Translates to: LFGCKVWGALHHPLY*CLVEHHGTLPKAAI
Trigger: AATGGCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGACTTTACAACCAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS GCA 72 bp ATCATCATCATGAGAGCAGCAGGCAATCTGAGAGATTaGCCCTTCCCGGTGAGAGAGAAACAGCCTTTGCTT +
Preference number: 6 (lower is better)
Translates to: IIIMRAAGNLRD*PFPVREKQPLL
Trigger: AAGCAAAGGCTGTTTCTCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCTGCTGCTCTCATGATGATGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS CCA 72 bp CTGGTTGTAGAAGGAACTCAAGGAAGGATGGCCGGGTaGCAAATGCAATCAACAAGGGACTATCAGAAGGGA +
Preference number: 6 (lower is better)
Translates to: LVVEGTQGRMAG*QMQSTRDYQKG
Trigger: TCCCTTCTGATAGTCCCTTGTTGATTGCATTTGCCACCCGGCCATCCTTCCTTGAGTTCCTTCTACAACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130365.2
CDS CAA 72 bp AATCATCATCATGAGAGCAGCAGGCAATCTGAGAGATaGCCCCTTCCCGGTGAGAGAGAAACAGCCTTTGCT +
Preference number: 6 (lower is better)
Translates to: NHHHESSRQSER*PLPGERETAFA
Trigger: AGCAAAGGCTGTTTCTCTCTCACCGGGAAGGGGCAATCTCTCAGATTGCCTGCTGCTCTCATGATGATGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000123725.2
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
CDS CAA 72 bp TGTAAAGTCTGGGGTGCCCTTCATCATCCACTGTACTaGTGCTTGGTGGAGCATCATGGGACACTGCCAAAA +
Preference number: 6 (lower is better)
Translates to: CKVWGALHHPLY*CLVEHHGTLPK
Trigger: TTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGACTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138480.2
CDS CCA 72 bp AAAGTGTTGAGTTTGATGGCAGATACTTTGCCCACATaGTCACCGACAAAGACTCTCAGAACAGCCGTGTCC +
Preference number: 6 (lower is better)
Translates to: KVLSLMADTLPT*SPTKTLRTAVS
Trigger: GGACACGGCTGTTCTGAGAGTCTTTGTCGGTGACCATGTGGGCAAAGTATCTGCCATCAAACTCAACACTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
ENSMUST00000211471.2
CDS CCA 72 bp GGAGCATTGAAAAGGGAAGGCAATGGCTCCCAAACCTaGAGCCATCTTTCATTCCTTCATTCCTATTGGCAC +
Preference number: 6 (lower is better)
Translates to: GALKREGNGSQT*SHLSFLHSYWH
Trigger: GTGCCAATAGGAATGAAGGAATGAAAGATGGCTCCAGGTTTGGGAGCCATTGCCTTCCCTTTTCAATGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS CCA 72 bp TCACAGGAATGCTGGAGCATTGAAAAGGGAAGGCAATaGCTCCCAAACCTGGAGCCATCTTTCATTCCTTCA +
Preference number: 6 (lower is better)
Translates to: SQECWSIEKGRQ*LPNLEPSFIPS
Trigger: TGAAGGAATGAAAGATGGCTCCAGGTTTGGGAGCCATTGCCTTCCCTTTTCAATGCTCCAGCATTCCTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142663.8
CDS CAA 90 bp TTCTCTAACTGTGAAAGCCACTCAAGTAAAACCATTCTTAGCACCTaGGGCTCAAACAGAACCAGAGGGTCCAATAACTTGGTCTCAGTG +
Preference number: 6 (lower is better)
Translates to: FSNCESHSSKTILST*GSNRTRGSNNLVSV
Trigger: CACTGAGACCAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGTGCTAAGAATGGTTTTACTTGAGTGGCTTTCACAGTTAGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153789.8
CDS CAA 72 bp GCTTGTTTCAAAGTGTTGAGTTTGATGGCAGATACTTaGCCCACATGGTCACCGACAAAGACTCTCAGAACA +
Preference number: 6 (lower is better)
Translates to: ACFKVLSLMADT*PTWSPTKTLRT
Trigger: TGTTCTGAGAGTCTTTGTCGGTGACCATGTGGGCAAAGTATCTGCCATCAAACTCAACACTTTGAAACAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000014562.14
ENSMUST00000107653.8
ENSMUST00000107654.8
ENSMUST00000142663.8
ENSMUST00000152759.8
ENSMUST00000211347.2
ENSMUST00000211471.2