Pregenerated sensors for HPRT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025630Ensembl transcript IDs: ENSMUST00000026723.9
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTACCAGAGGGTAGGCTGGCCTATAGGCTCATAGTGCAAATCAAAAGTCTGGGGAGGGAAAGCAAAGTTTaGATTGTTTTACCAGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LPEGRLAYRLIVQIKSLGRESKV*IVLPVS Trigger: TGACACTGGTAAAACAATGCAAACTTTGCTTTCCCT...CCCCAGACTTTTGATTTGCACTATGAGCCTATAGGCCAGCCTACCCTCTGGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026723.9 |
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| CDS-3UTR TCA 90 bp | GACAATCTACCAGAGGGTAGGCTGGCCTATAGGCTCATAGTGCAAATCAAAAGTTTTTATGTCCCCCGTTaGCTGATCATTACAGTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: DNLPEGRLAYRLIVQIKSFYVPR*LIITVA Trigger: AGCTACTGTAATGATCAGTCAACGGGGGACATAAAA...ACTTTTGATTTGCACTATGAGCCTATAGGCCAGCCTACCCTCTGGTAGATTGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000026723.9 |
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| CDS-3UTR GCA 90 bp | GACAATCTACCAGAGGGTAGGCTGGCCTATAGGCTCATAGTGCAAATCAAAAGTTTTCACCAGCAAGCTTaGAACCTTAACCATTTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: DNLPEGRLAYRLIVQIKSFHQQA*NLNHFG Trigger: CCCAAAATGGTTAAGGTTGCAAGCTTGCTGGTGAAA...ACTTTTGATTTGCACTATGAGCCTATAGGCCAGCCTACCCTCTGGTAGATTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026723.9 |
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| CDS-3UTR TCA 90 bp | CCAACACTGCTGAAACATGTTTATTCCACTGAGCAAAACCTCTTAGATGCTGTTTCCATAATCAGTCCATaGGGAATAAACACTTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: PTLLKHVYSTEQNLLDAVSIISP*GINTFS Trigger: GGAAAAAGTGTTTATTCCTCATGGACTGATTATGGA...AACAGCATCTAAGAGGTTTTGCTCAGTGGAATAAACATGTTTCAGCAGTGTTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026723.9 |
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| CDS-3UTR CAA 90 bp | ACACCTGCTAATTTTACTGGCAACATCAACAGGACTCCTCGTATTTGCAGATTCCAGGGAAAGCAAAGTTaGCATTGTTTTACCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: TPANFTGNINRTPRICRFQGKQS*HCFTSV Trigger: GACACTGGTAAAACAATGCAAACTTTGCTTTCCCTG...GAATCTGCAAATACGAGGAGTCCTGTTGATGTTGCCAGTAAAATTAGCAGGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026723.9 |
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| CDS CAA 72 bp | GTCCTTTTCACCAGCAAGCTTGCAACCTTAACCATTTaGGGGCTGTACTGCTTAACCAGGGAAAGCAAAGTT | + |
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Preference number: 6 (lower is better) Translates to: VLFTSKLATLTI*GLYCLTRESKV Trigger: AACTTTGCTTTCCCTGGTTAAGCAGTACAGCCCCAAAATGGTTAAGGTTGCAAGCTTGCTGGTGAAAAGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026723.9 |
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